FvH4_3g05520

Katanin p60 ATPase-containing subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
3224491 .. 3229768
5278 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05520.t2

Sequence Viewer

Length: 1188 bp
ATGTCCGATGAGCCTTCAATCACTCGCTGGACCTTTCCGTTTGGTAGAAAGAAAGTGCCGGAGGAGACGCCAAGCGAGCAGGCAACCGCTAATGGAGGTGTGAGTAATGGGGGAGCTTCAAGCGCCACAGCGAATGGGAATGGTCATGTGAAAAACCAATCTGACTTGGCCATCTATGAGAGATATCGAAACCAGGAAGCTGCACAGTCGAATGGAGTTTCATCTGATCCAACTCATGTGATCCCGAAGTCTTTGCTTCCTGCTTTTGATTCTGCAGAAACACGTTCATTAGCAGAGAGTTTATGCAGGGATATAGTTCGTGGTGATCCGGATGTTAAGTGGGAAACCATTAAGGGCTTAGAGAATGCTAAACGTTTACTTAAAGAAGCAGTGGTCATGCCGATTAAGTATCCCAAGTACTTTACTGGTCTTTTATCACCTTGGAAAGGTATTCTCCTTTTTGGCCCTCCAGGAACAGGAAAGACTATGCTTGCGAAGGCCGTTGCAACAGAGTGCAAGACCACATTTTTCAACATTTCAGCATCATCAGTTGTCAGTAAATGGCGCGGTGACTCTGAGAAGTTAGTGAAGGTGCTATTTGAGCTCGCCAGGCACCATGCACCCTCAACTATATTTATTGATGAAATTGATGCAATTATTAGTCAACGTGGTGAAGGGCGAAGTGAGCATGAAGCAAGTAGGCGTTTGAAAACGGAGCTTCTGATACAGATGGATGGTTTGACGAAGACAAATGAACTAGTATTTGTTTTGGCCGCAACAAATCTTCCGTGGGAACTTGATGCAGCTATGCTCCGGCGTCTTGAAAAACGAATTCTTGTGCCTCTGCCTGAACCTGAAGCACGAAGAGCCATGTTTGAGGAGCTCCTGCCTGTAGAACCTGGTGAGGAGGAGCTTCCTTATGATTTGTTGGTGGATAAGACAGAAGGATATTCAGGTTCTGATATTCGTTTGGTATGCAAGGAGGCTGCCATGCAGCCCCTGAGACGCCTAATGACACTCCTTGAAGACAAAGAGGAAATGATGCCTGAGGAAGAACTCCCTAAGGTTGGACCGATCAAACATGATGACATTGAGACAGCTTTGAAGAACACAAGGCCATCTGCTCACCTCCAGGCTCATCGTTATGAGAAGTTCAATGCTGATTACGGCAGTCAAATACTCCAATGA

Protein Analysis

396

Amino Acids

44.05

Weight (kDa)

5.67

Isoelectric Point (pI)

53.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 146 - 277 1.7e-41 ATPase family associated with various cellular activities (AAA)
RuvB_N PF05496 146 - 214 3.9e-06 Holliday junction DNA helicase RuvB P-loop domain
AAA_lid_3 PF17862 302 - 339 3.4e-12 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 612
AccII CGCG 1 cut(s) 567
AccIII TCCGGA 1 cut(s) 328
AciI CCGC 3 cut(s) 87, 567, 774
AclI AACGTT 1 cut(s) 373
AclWI GGATC 3 cut(s) 221, 235, 320
AcoI YGGCCR 2 cut(s) 168, 771
AcsI RAATTY 1 cut(s) 831
AcuI CTGAAG 1 cut(s) 876
AcyI GRCGYC 3 cut(s) 68, 817, 1006
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 3 cut(s) 446, 476, 1067
AflIII ACRYGT 1 cut(s) 281
AgsI TTSAA 8 cut(s) 18, 120, 532, 709, 824, 1025, 1105, 1156
AhlI ACTAGT 1 cut(s) 757
AjnI CCWGG 5 cut(s) 192, 469, 608, 898, 1131
AluBI AGCT 8 cut(s) 116, 200, 604, 718, 806, 883, 913, 1100
AluI AGCT 8 cut(s) 116, 200, 604, 718, 806, 883, 913, 1100
Alw21I GWGCWC 2 cut(s) 606, 885
Alw26I GTCTC 3 cut(s) 59, 997, 1088
AlwI GGATC 3 cut(s) 221, 235, 320
AlwNI CAGNNNCTG 2 cut(s) 959, 1000
Aor13HI TCCGGA 1 cut(s) 328
AoxI GGCC 5 cut(s) 168, 463, 498, 771, 1115
ApeKI GCWGC 4 cut(s) 200, 803, 986, 994
ApoI RAATTY 1 cut(s) 831
AspLEI GCGC 2 cut(s) 125, 567
AspS9I GGNCC 3 cut(s) 30, 464, 1070
AsuHPI GGTGA 6 cut(s) 335, 429, 581, 683, 914, 1118
AvaII GGWCC 2 cut(s) 30, 1070
AxyI CCTNAGG 2 cut(s) 1047, 1062
BalI TGGCCA 1 cut(s) 170
BanI GGYRCC 1 cut(s) 612
BanII GRGCYC 2 cut(s) 606, 885
BbsI GAAGAC 2 cut(s) 752, 1032
Bbv12I GWGCWC 2 cut(s) 606, 885
BbvI GCAGC 4 cut(s) 187, 815, 973, 1006
BccI CCATC 4 cut(s) 179, 724, 728, 1126
BceAI ACGGC 2 cut(s) 485, 1183
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BciT130I CCWGG 5 cut(s) 194, 471, 610, 900, 1133
BciVI GTATCC 1 cut(s) 420
BcoDI GTCTC 3 cut(s) 59, 997, 1088
BcuI ACTAGT 1 cut(s) 757
BfaI CTAG 1 cut(s) 758
BfmI CTRYAG 2 cut(s) 273, 891
BfoI RGCGCY 1 cut(s) 126
BfuI GTATCC 1 cut(s) 420
BisI GCNGC 5 cut(s) 201, 774, 804, 987, 995
BlsI GCNGC 5 cut(s) 202, 775, 805, 988, 996
BmcAI AGTACT 1 cut(s) 419
Bme1390I CCNGG 5 cut(s) 194, 471, 610, 900, 1133
Bme18I GGWCC 2 cut(s) 30, 1070
BmgT120I GGNCC 3 cut(s) 30, 464, 1070
BmiI GGNNCC 1 cut(s) 614
BmrFI CCNGG 5 cut(s) 194, 471, 610, 900, 1133
BmsI GCATC 4 cut(s) 551, 640, 790, 1032
BpiI GAAGAC 2 cut(s) 752, 1032
BpmI CTGGAG 2 cut(s) 453, 1115
BsaHI GRCGYC 3 cut(s) 68, 817, 1006
BsaJI CCNNGG 2 cut(s) 440, 788
BsaWI WCCGGW 1 cut(s) 328
Bsc4I CCNNNNNNNGG 3 cut(s) 446, 476, 1067
Bse1I ACTGG 1 cut(s) 430
Bse21I CCTNAGG 2 cut(s) 1047, 1062
BseAI TCCGGA 1 cut(s) 328
BseBI CCWGG 5 cut(s) 194, 471, 610, 900, 1133
BseDI CCNNGG 2 cut(s) 440, 788
BseGI GGATG 2 cut(s) 337, 739
BseLI CCNNNNNNNGG 3 cut(s) 446, 476, 1067
BseMII CTCAG 3 cut(s) 567, 992, 1038
BseNI ACTGG 1 cut(s) 430
BseRI GAGGAG 4 cut(s) 77, 893, 920, 923
BseXI GCAGC 4 cut(s) 187, 815, 973, 1006
BsgI GTGCAG 1 cut(s) 186
Bsh1236I CGCG 1 cut(s) 567
BshFI GGCC 5 cut(s) 170, 465, 500, 773, 1117
BshNI GGYRCC 1 cut(s) 612
BsiHKAI GWGCWC 2 cut(s) 606, 885
BsiSI CCGG 3 cut(s) 59, 329, 814
BslI CCNNNNNNNGG 3 cut(s) 446, 476, 1067
BsmAI GTCTC 3 cut(s) 59, 997, 1088
BsmBI CGTCTC 2 cut(s) 59, 997
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 5 cut(s) 170, 465, 500, 773, 1117
Bsp1286I GDGCHC 2 cut(s) 606, 885
Bsp13I TCCGGA 1 cut(s) 328
Bsp143I GATC 4 cut(s) 226, 240, 325, 1074
BspACI CCGC 3 cut(s) 87, 567, 774
BspANI GGCC 5 cut(s) 170, 465, 500, 773, 1117
BspCNI CTCAG 3 cut(s) 568, 993, 1039
BspEI TCCGGA 1 cut(s) 328
BspFNI CGCG 1 cut(s) 567
BspLI GGNNCC 1 cut(s) 614
BspMAI CTGCAG 1 cut(s) 277
BspPI GGATC 3 cut(s) 221, 235, 320
BspQI GCTCTTC 1 cut(s) 859
BspT107I GGYRCC 1 cut(s) 612
BsrI ACTGG 1 cut(s) 430
BssECI CCNNGG 2 cut(s) 440, 788
BssMI GATC 4 cut(s) 226, 240, 325, 1074
BssNI GRCGYC 3 cut(s) 68, 817, 1006
BssT1I CCWWGG 1 cut(s) 440
Bst2UI CCWGG 5 cut(s) 194, 471, 610, 900, 1133
Bst4CI ACNGT 1 cut(s) 207
Bst6I CTCTTC 1 cut(s) 859
BstACI GRCGYC 3 cut(s) 68, 817, 1006
BstC8I GCNNGC 4 cut(s) 77, 81, 492, 606
BstDEI CTNAG 5 cut(s) 358, 576, 1001, 1047, 1062
BstDSI CCRYGG 1 cut(s) 788
BstENI CCTNNNNNAGG 1 cut(s) 444
BstF5I GGATG 2 cut(s) 337, 739
BstFNI CGCG 1 cut(s) 567
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 2 cut(s) 125, 567
BstKTI GATC 4 cut(s) 229, 243, 328, 1077
BstMAI GTCTC 3 cut(s) 59, 997, 1088
BstMBI GATC 4 cut(s) 226, 240, 325, 1074
BstMWI GCNNNNNNNGC 6 cut(s) 76, 122, 601, 610, 685, 866
BstNI CCWGG 5 cut(s) 194, 471, 610, 900, 1133
BstSCI CCNGG 5 cut(s) 192, 469, 608, 898, 1131
BstSFI CTRYAG 2 cut(s) 273, 891
BstUI CGCG 1 cut(s) 567
BstV1I GCAGC 4 cut(s) 187, 815, 973, 1006
BstV2I GAAGAC 2 cut(s) 752, 1032
Bsu36I CCTNAGG 2 cut(s) 1047, 1062
BsuI GTATCC 1 cut(s) 420
BsuRI GGCC 5 cut(s) 170, 465, 500, 773, 1117
BtgI CCRYGG 1 cut(s) 788
BtsCI GGATG 2 cut(s) 337, 739
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 1 cut(s) 396
Cac8I GCNNGC 4 cut(s) 77, 81, 492, 606
CaiI CAGNNNCTG 2 cut(s) 959, 1000
CfoI GCGC 2 cut(s) 125, 567
Cfr13I GGNCC 3 cut(s) 30, 464, 1070
CseI GACGC 3 cut(s) 76, 806, 1014
CsiI ACCWGGT 1 cut(s) 898
Csp6I GTAC 1 cut(s) 418
CviAII CATG 8 cut(s) 146, 236, 397, 617, 689, 871, 991, 1082
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 5 cut(s) 358, 576, 1001, 1047, 1062
DpnI GATC 4 cut(s) 228, 242, 327, 1076
DpnII GATC 4 cut(s) 226, 240, 325, 1074
EaeI YGGCCR 2 cut(s) 168, 771
Eam1104I CTCTTC 1 cut(s) 859
EarI CTCTTC 1 cut(s) 859
Ecl136II GAGCTC 2 cut(s) 604, 883
Eco130I CCWWGG 1 cut(s) 440
Eco24I GRGCYC 2 cut(s) 606, 885
Eco32I GATATC 1 cut(s) 185
Eco47I GGWCC 2 cut(s) 30, 1070
Eco53kI GAGCTC 2 cut(s) 604, 883
Eco57I CTGAAG 1 cut(s) 876
Eco81I CCTNAGG 2 cut(s) 1047, 1062
EcoICRI GAGCTC 2 cut(s) 604, 883
EcoNI CCTNNNNNAGG 1 cut(s) 444
EcoRI GAATTC 1 cut(s) 831
EcoRII CCWGG 5 cut(s) 192, 469, 608, 898, 1131
EcoRV GATATC 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 440
EcoT38I GRGCYC 2 cut(s) 606, 885
ErhI CCWWGG 1 cut(s) 440
Esp3I CGTCTC 2 cut(s) 59, 997
FaeI CATG 8 cut(s) 149, 239, 400, 620, 692, 874, 994, 1085
FatI CATG 8 cut(s) 145, 235, 396, 616, 688, 870, 990, 1081
Fnu4HI GCNGC 5 cut(s) 201, 774, 804, 987, 995
FokI GGATG 2 cut(s) 344, 746
FriOI GRGCYC 2 cut(s) 606, 885
Fsp4HI GCNGC 5 cut(s) 201, 774, 804, 987, 995
FspBI CTAG 1 cut(s) 758
GlaI GCGC 2 cut(s) 124, 566
GluI GCNGC 5 cut(s) 201, 774, 804, 987, 995
GsuI CTGGAG 2 cut(s) 453, 1115
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 5 cut(s) 170, 465, 500, 773, 1117
HapII CCGG 3 cut(s) 59, 329, 814
HgaI GACGC 3 cut(s) 76, 806, 1014
HhaI GCGC 2 cut(s) 125, 567
Hin1I GRCGYC 3 cut(s) 68, 817, 1006
Hin1II CATG 8 cut(s) 149, 239, 400, 620, 692, 874, 994, 1085
Hin6I GCGC 2 cut(s) 123, 565
HinP1I GCGC 2 cut(s) 123, 565
HincII GTYRAC 1 cut(s) 665
HindII GTYRAC 1 cut(s) 665
HinfI GANTC 2 cut(s) 269, 572
HpaII CCGG 3 cut(s) 59, 329, 814
HphI GGTGA 6 cut(s) 335, 429, 581, 683, 914, 1118
Hpy166II GTNNAC 2 cut(s) 377, 665
Hpy188I TCNGA 6 cut(s) 7, 163, 226, 577, 723, 961
Hpy188III TCNNGA 3 cut(s) 244, 329, 821
Hpy8I GTNNAC 2 cut(s) 377, 665
HpyAV CCTTC 5 cut(s) 24, 490, 583, 668, 938
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4IV ACGT 3 cut(s) 283, 373, 667
HpyF10VI GCNNNNNNNGC 6 cut(s) 76, 122, 601, 610, 685, 866
HpyF3I CTNAG 5 cut(s) 358, 576, 1001, 1047, 1062
HpySE526I ACGT 3 cut(s) 283, 373, 667
Hsp92I GRCGYC 3 cut(s) 68, 817, 1006
Hsp92II CATG 8 cut(s) 149, 239, 400, 620, 692, 874, 994, 1085
HspAI GCGC 2 cut(s) 123, 565
Kpn2I TCCGGA 1 cut(s) 328
Kzo9I GATC 4 cut(s) 226, 240, 325, 1074
LguI GCTCTTC 1 cut(s) 859
LmnI GCTCC 6 cut(s) 113, 715, 816, 880, 888, 910
Lsp1109I GCAGC 4 cut(s) 187, 815, 973, 1006
LweI GCATC 4 cut(s) 551, 640, 790, 1032
MabI ACCWGGT 1 cut(s) 898
MaeI CTAG 1 cut(s) 758
MaeII ACGT 3 cut(s) 283, 373, 667
MaeIII GTNAC 1 cut(s) 569
MalI GATC 4 cut(s) 228, 242, 327, 1076
MboI GATC 4 cut(s) 226, 240, 325, 1074
MboII GAAGA 6 cut(s) 757, 776, 876, 1037, 1064, 1117
MhlI GDGCHC 2 cut(s) 606, 885
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 3 cut(s) 645, 654, 831
MluNI TGGCCA 1 cut(s) 170
MlyI GAGTC 1 cut(s) 566
MmeI TCCRAC 2 cut(s) 254, 1048
Mox20I TGGCCA 1 cut(s) 170
MroI TCCGGA 1 cut(s) 328
MscI TGGCCA 1 cut(s) 170
MseI TTAA 4 cut(s) 336, 351, 381, 405
MslI CAYNNNNRTG 1 cut(s) 1143
Msp20I TGGCCA 1 cut(s) 170
MspI CCGG 3 cut(s) 59, 329, 814
MspR9I CCNGG 5 cut(s) 194, 471, 610, 900, 1133
Mva1269I GAATGC 1 cut(s) 370
MvaI CCWGG 5 cut(s) 194, 471, 610, 900, 1133
MvnI CGCG 1 cut(s) 567
MwoI GCNNNNNNNGC 6 cut(s) 76, 122, 601, 610, 685, 866
NdeII GATC 4 cut(s) 226, 240, 325, 1074
NlaIII CATG 8 cut(s) 149, 239, 400, 620, 692, 874, 994, 1085
NlaIV GGNNCC 1 cut(s) 614
NmuCI GTSAC 1 cut(s) 569
PciSI GCTCTTC 1 cut(s) 859
PctI GAATGC 1 cut(s) 370
PfeI GAWTC 1 cut(s) 269
PfoI TCCNGGA 1 cut(s) 469
PkrI GCNGC 5 cut(s) 202, 775, 805, 988, 996
PleI GAGTC 1 cut(s) 566
PpsI GAGTC 1 cut(s) 566
Psp124BI GAGCTC 2 cut(s) 606, 885
Psp1406I AACGTT 1 cut(s) 373
Psp6I CCWGG 5 cut(s) 192, 469, 608, 898, 1131
PspGI CCWGG 5 cut(s) 192, 469, 608, 898, 1131
PspN4I GGNNCC 1 cut(s) 614
PspPI GGNCC 3 cut(s) 30, 464, 1070
PstI CTGCAG 1 cut(s) 277
PstNI CAGNNNCTG 2 cut(s) 959, 1000
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
RseI CAYNNNNRTG 1 cut(s) 1143
SacI GAGCTC 2 cut(s) 606, 885
SapI GCTCTTC 1 cut(s) 859
SaqAI TTAA 4 cut(s) 336, 351, 381, 405
SatI GCNGC 5 cut(s) 201, 774, 804, 987, 995
Sau3AI GATC 4 cut(s) 226, 240, 325, 1074
Sau96I GGNCC 3 cut(s) 30, 464, 1070
ScaI AGTACT 1 cut(s) 419
SchI GAGTC 1 cut(s) 566
ScrFI CCNGG 5 cut(s) 194, 471, 610, 900, 1133
SduI GDGCHC 2 cut(s) 606, 885
SexAI ACCWGGT 1 cut(s) 898
SfaNI GCATC 4 cut(s) 551, 640, 790, 1032
SfcI CTRYAG 2 cut(s) 273, 891
SinI GGWCC 2 cut(s) 30, 1070
SmiMI CAYNNNNRTG 1 cut(s) 1143
SpeI ACTAGT 1 cut(s) 757
Sse9I AATT 3 cut(s) 645, 654, 831
SsiI CCGC 3 cut(s) 87, 567, 774
SspMI CTAG 1 cut(s) 758
SstI GAGCTC 2 cut(s) 606, 885
StyD4I CCNGG 5 cut(s) 192, 469, 608, 898, 1131
StyI CCWWGG 1 cut(s) 440
TaaI ACNGT 1 cut(s) 207
TaiI ACGT 3 cut(s) 286, 376, 670
TaqI TCGA 2 cut(s) 187, 209
TaqII GACCGA 1 cut(s) 1087
TasI AATT 3 cut(s) 645, 654, 831
TatI WGTACW 1 cut(s) 417
TauI GCSGC 1 cut(s) 776
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 4 cut(s) 336, 351, 381, 405
Tru9I TTAA 4 cut(s) 336, 351, 381, 405
TscAI CASTG 1 cut(s) 396
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 4 cut(s) 200, 803, 986, 994
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 5 cut(s) 210, 276, 657, 705, 768
TspGWI ACGGA 3 cut(s) 27, 728, 777
TspRI CASTG 1 cut(s) 396
VpaK11BI GGWCC 2 cut(s) 30, 1070
XagI CCTNNNNNAGG 1 cut(s) 444
XapI RAATTY 1 cut(s) 831
XspI CTAG 1 cut(s) 758
ZrmI AGTACT 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.