Prupe.4G080800_v2.0.a1

Katanin p60 ATPase-containing subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
3927620 .. 3932698
5079 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G080800.1

Sequence Viewer

Length: 1221 bp
ATGGCCGAGGAGCCTGCACCCAGTCGCTGGTCCTTCCAGGATTTTAAATTGTTTTATGATGCCAAGTTTGGTAGAAAGAAAGTGGCGGAGCCGCAAAACGGGCAGTCCACTGATAAAGCTGTGAGTAATGGGAGTAGTTCGGGGGGGACTGCGAATGGGAATGGTCATGTTAAAAACACAGCTGACTTGGCCATCTATGAGCAATTTCAAAACCAGGATAGGAGCTCGGCACCTCACTCGAATGGAGGCTTATCTGATAGGCATGATCAGACACCGCAGAAGTCTCTGTTGCCGGCTTTTGAATCAGCAGAAATGCGTTCGTTAGCAGAGAGTTTAGCCAGGGATATAGTTCGTGGGAATCCAGATGTTAAGTGGGAAAGCATCAAGGGCTTGGAGAATGCGAAACGTTTGCTTAAAGAAGCAGTGGTCATGCCAATTAAATATCCCAAGTACTTTACTGGTCTTTTGTCACCGTGGAAAGGTATTCTCCTCTTTGGCCCTCCAGGGACAGGAAAGACAATGCTTGCAAAGGCCGTTGCAACAGAGTGCAAGACCACATTTTTCAACATTTCAGCCTCATCTGTTGTCAGTAAATGGCGTGGCGACTCAGAGAAGTTAGTGAAGGTGTTATTTGAGCTTGCTAGGCACCATGCACCATCAACCATATTTATTGATGAAATTGATGCAATTATTAGTCAACGTGGCGAAGGACGAAGTGAGCATGAAGCAAGTAGGCGTTTGAAGACGGAACTACTCATACAGATGGATGGCTTGACGCGGACAAGTGAACTTGTTTTTGTTTTGGCTGCAACAAACCTTCCTTGGGAACTGGATGCAGCCATGCTTCGGCGTCTTGAGAAGCGAATTCTTGTGCCTCTGCCTGAACCAGAAGCAAGAAGATCCATGTTTGAGGAGCTCCTGCCACTGGAGCCTGACGAGGAGAAGCTTCCTTATGATTTGTTGGTTGAAAGGACAGAAGGATATTCAGGTTCAGATATTCGATTGGTATGCAAGGAGGCTGCCATGCAGCCTTTGAGACGGTTAATGTCATTCCTTGAAGACAAAGAGGAAATAGTTCCTGAGGATGAACTGCCTAAGGTTGGACCAATCAAACGCGAAGATATTGAGGCAGCTTTGAAGAACACAAGGCCATCTGCTCATCTCCAAGCTCATCGTTACGAGAAGTTCAATGCAGATTATGGTAGTCAAATACTCCAATGA

Protein Analysis

407

Amino Acids

45.53

Weight (kDa)

6.15

Isoelectric Point (pI)

54.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 229, 645
AccB7I CCANNNNNTGG 1 cut(s) 27
AccII CGCG 2 cut(s) 778, 1116
AciI CCGC 4 cut(s) 86, 92, 275, 778
AclI AACGTT 1 cut(s) 406
AclWI GGATC 1 cut(s) 894
AcoI YGGCCR 2 cut(s) 3, 189
AcsI RAATTY 1 cut(s) 864
AcyI GRCGYC 1 cut(s) 850
AfaI GTAC 1 cut(s) 452
AfiI CCNNNNNNNGG 8 cut(s) 27, 98, 479, 509, 823, 846, 925, 1100
AgsI TTSAA 8 cut(s) 209, 302, 565, 742, 968, 1058, 1138, 1189
AjnI CCWGG 4 cut(s) 36, 213, 338, 502
AluBI AGCT 8 cut(s) 119, 182, 225, 637, 916, 946, 1133, 1169
AluI AGCT 8 cut(s) 119, 182, 225, 637, 916, 946, 1133, 1169
Alw21I GWGCWC 2 cut(s) 227, 918
Alw26I GTCTC 2 cut(s) 288, 1030
AlwI GGATC 1 cut(s) 894
AlwNI CAGNNNCTG 1 cut(s) 27
AoxI GGCC 5 cut(s) 3, 189, 496, 531, 1148
ApeKI GCWGC 5 cut(s) 806, 836, 1019, 1027, 1130
ApoI RAATTY 1 cut(s) 864
Asp700I GAANNNNTTC 1 cut(s) 1074
AspS9I GGNCC 3 cut(s) 30, 497, 1103
AsuHPI GGTGA 1 cut(s) 462
AvaII GGWCC 2 cut(s) 30, 1103
AxyI CCTNAGG 2 cut(s) 1080, 1095
BalI TGGCCA 1 cut(s) 191
BanI GGYRCC 2 cut(s) 229, 645
BanII GRGCYC 2 cut(s) 227, 918
BbsI GAAGAC 2 cut(s) 749, 1065
Bbv12I GWGCWC 2 cut(s) 227, 918
BbvI GCAGC 5 cut(s) 793, 848, 1006, 1039, 1142
BccI CCATC 5 cut(s) 200, 664, 757, 761, 1159
BceAI ACGGC 1 cut(s) 518
BcgI CGANNNNNNTGC 7 cut(s) 30, 219, 253, 391, 425, 990, 1024
BciT130I CCWGG 4 cut(s) 38, 215, 340, 504
BclI TGATCA 1 cut(s) 265
BcoDI GTCTC 2 cut(s) 288, 1030
BfaI CTAG 1 cut(s) 642
BisI GCNGC 6 cut(s) 92, 807, 837, 1020, 1028, 1131
BlsI GCNGC 6 cut(s) 93, 808, 838, 1021, 1029, 1132
BmcAI AGTACT 1 cut(s) 452
Bme1390I CCNGG 4 cut(s) 38, 215, 340, 504
Bme18I GGWCC 2 cut(s) 30, 1103
BmgT120I GGNCC 3 cut(s) 30, 497, 1103
BmiI GGNNCC 5 cut(s) 12, 90, 231, 647, 930
BmrFI CCNGG 4 cut(s) 38, 215, 340, 504
BmrI ACTGGG 1 cut(s) 15
BmsI GCATC 4 cut(s) 49, 390, 673, 823
BmuI ACTGGG 1 cut(s) 15
BpiI GAAGAC 2 cut(s) 749, 1065
BpmI CTGGAG 2 cut(s) 486, 947
BpuEI CTTGAG 1 cut(s) 875
BsaHI GRCGYC 1 cut(s) 850
BsaJI CCNNGG 5 cut(s) 6, 339, 473, 503, 821
Bsc4I CCNNNNNNNGG 8 cut(s) 27, 98, 479, 509, 823, 846, 925, 1100
Bse118I RCCGGY 1 cut(s) 292
Bse1I ACTGG 4 cut(s) 21, 463, 834, 930
Bse21I CCTNAGG 2 cut(s) 1080, 1095
BseBI CCWGG 4 cut(s) 38, 215, 340, 504
BseDI CCNNGG 5 cut(s) 6, 339, 473, 503, 821
BseGI GGATG 3 cut(s) 772, 838, 1090
BseLI CCNNNNNNNGG 8 cut(s) 27, 98, 479, 509, 823, 846, 925, 1100
BseMII CTCAG 2 cut(s) 621, 1071
BseNI ACTGG 4 cut(s) 21, 463, 834, 930
BseRI GAGGAG 4 cut(s) 23, 479, 926, 953
BseXI GCAGC 5 cut(s) 793, 848, 1006, 1039, 1142
Bsh1236I CGCG 2 cut(s) 778, 1116
BshFI GGCC 5 cut(s) 5, 191, 498, 533, 1150
BshNI GGYRCC 2 cut(s) 229, 645
BsiHKAI GWGCWC 2 cut(s) 227, 918
BsiSI CCGG 1 cut(s) 293
BslFI GGGAC 2 cut(s) 160, 520
BslI CCNNNNNNNGG 8 cut(s) 27, 98, 479, 509, 823, 846, 925, 1100
BsmAI GTCTC 2 cut(s) 288, 1030
BsmBI CGTCTC 1 cut(s) 1030
BsmFI GGGAC 2 cut(s) 160, 520
BsmI GAATGC 1 cut(s) 403
BsnI GGCC 5 cut(s) 5, 191, 498, 533, 1150
Bsp1286I GDGCHC 2 cut(s) 227, 918
Bsp143I GATC 2 cut(s) 265, 899
BspACI CCGC 4 cut(s) 86, 92, 275, 778
BspANI GGCC 5 cut(s) 5, 191, 498, 533, 1150
BspCNI CTCAG 2 cut(s) 620, 1072
BspFNI CGCG 2 cut(s) 778, 1116
BspLI GGNNCC 5 cut(s) 12, 90, 231, 647, 930
BspPI GGATC 1 cut(s) 894
BspT107I GGYRCC 2 cut(s) 229, 645
BsrFI RCCGGY 1 cut(s) 292
BsrI ACTGG 4 cut(s) 21, 463, 834, 930
BssAI RCCGGY 1 cut(s) 292
BssECI CCNNGG 5 cut(s) 6, 339, 473, 503, 821
BssMI GATC 2 cut(s) 265, 899
BssNI GRCGYC 1 cut(s) 850
BssT1I CCWWGG 1 cut(s) 821
Bst2UI CCWGG 4 cut(s) 38, 215, 340, 504
Bst4CI ACNGT 2 cut(s) 474, 1041
BstACI GRCGYC 1 cut(s) 850
BstC8I GCNNGC 4 cut(s) 15, 294, 525, 639
BstDEI CTNAG 3 cut(s) 607, 1080, 1095
BstDSI CCRYGG 1 cut(s) 473
BstF5I GGATG 3 cut(s) 772, 838, 1090
BstFNI CGCG 2 cut(s) 778, 1116
BstKTI GATC 2 cut(s) 268, 902
BstMAI GTCTC 2 cut(s) 288, 1030
BstMBI GATC 2 cut(s) 265, 899
BstMWI GCNNNNNNNGC 5 cut(s) 100, 188, 387, 643, 928
BstNI CCWGG 4 cut(s) 38, 215, 340, 504
BstSCI CCNGG 4 cut(s) 36, 213, 338, 502
BstUI CGCG 2 cut(s) 778, 1116
BstV1I GCAGC 5 cut(s) 793, 848, 1006, 1039, 1142
BstV2I GAAGAC 2 cut(s) 749, 1065
BstX2I RGATCY 1 cut(s) 899
BstYI RGATCY 1 cut(s) 899
Bsu36I CCTNAGG 2 cut(s) 1080, 1095
BsuRI GGCC 5 cut(s) 5, 191, 498, 533, 1150
BtgI CCRYGG 1 cut(s) 473
BtsCI GGATG 3 cut(s) 772, 838, 1090
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 3 cut(s) 108, 429, 923
Cac8I GCNNGC 4 cut(s) 15, 294, 525, 639
CaiI CAGNNNCTG 1 cut(s) 27
Cfr10I RCCGGY 1 cut(s) 292
Cfr13I GGNCC 3 cut(s) 30, 497, 1103
CseI GACGC 2 cut(s) 784, 839
Csp6I GTAC 1 cut(s) 451
CviAII CATG 8 cut(s) 167, 263, 430, 650, 722, 841, 904, 1024
CviQI GTAC 1 cut(s) 451
DdeI CTNAG 3 cut(s) 607, 1080, 1095
DpnI GATC 2 cut(s) 267, 901
DpnII GATC 2 cut(s) 265, 899
DraI TTTAAA 1 cut(s) 46
EaeI YGGCCR 2 cut(s) 3, 189
EciI GGCGGA 1 cut(s) 101
Ecl136II GAGCTC 2 cut(s) 225, 916
Eco130I CCWWGG 1 cut(s) 821
Eco24I GRGCYC 2 cut(s) 227, 918
Eco47I GGWCC 2 cut(s) 30, 1103
Eco53kI GAGCTC 2 cut(s) 225, 916
Eco81I CCTNAGG 2 cut(s) 1080, 1095
EcoICRI GAGCTC 2 cut(s) 225, 916
EcoRI GAATTC 1 cut(s) 864
EcoRII CCWGG 4 cut(s) 36, 213, 338, 502
EcoT14I CCWWGG 1 cut(s) 821
EcoT38I GRGCYC 2 cut(s) 227, 918
ErhI CCWWGG 1 cut(s) 821
Esp3I CGTCTC 1 cut(s) 1030
FaeI CATG 8 cut(s) 170, 266, 433, 653, 725, 844, 907, 1027
FaqI GGGAC 2 cut(s) 160, 520
FatI CATG 8 cut(s) 166, 262, 429, 649, 721, 840, 903, 1023
FbaI TGATCA 1 cut(s) 265
Fnu4HI GCNGC 6 cut(s) 92, 807, 837, 1020, 1028, 1131
FokI GGATG 3 cut(s) 779, 845, 1097
FriOI GRGCYC 2 cut(s) 227, 918
Fsp4HI GCNGC 6 cut(s) 92, 807, 837, 1020, 1028, 1131
FspBI CTAG 1 cut(s) 642
GluI GCNGC 6 cut(s) 92, 807, 837, 1020, 1028, 1131
GsuI CTGGAG 2 cut(s) 486, 947
HaeIII GGCC 5 cut(s) 5, 191, 498, 533, 1150
HapII CCGG 1 cut(s) 293
HgaI GACGC 2 cut(s) 784, 839
Hin1I GRCGYC 1 cut(s) 850
Hin1II CATG 8 cut(s) 170, 266, 433, 653, 725, 844, 907, 1027
HincII GTYRAC 1 cut(s) 698
HindII GTYRAC 1 cut(s) 698
HindIII AAGCTT 1 cut(s) 944
HinfI GANTC 3 cut(s) 302, 358, 605
HpaII CCGG 1 cut(s) 293
HphI GGTGA 1 cut(s) 462
Hpy166II GTNNAC 3 cut(s) 108, 698, 788
Hpy188I TCNGA 4 cut(s) 256, 270, 610, 994
Hpy188III TCNNGA 3 cut(s) 362, 854, 1079
Hpy8I GTNNAC 3 cut(s) 108, 698, 788
HpyAV CCTTC 5 cut(s) 43, 616, 701, 827, 971
HpyCH4III ACNGT 2 cut(s) 474, 1041
HpyCH4IV ACGT 2 cut(s) 406, 700
HpyF10VI GCNNNNNNNGC 5 cut(s) 100, 188, 387, 643, 928
HpyF3I CTNAG 3 cut(s) 607, 1080, 1095
HpySE526I ACGT 2 cut(s) 406, 700
Hsp92I GRCGYC 1 cut(s) 850
Hsp92II CATG 8 cut(s) 170, 266, 433, 653, 725, 844, 907, 1027
KroI GCCGGC 1 cut(s) 292
KroNI GCCGGC 1 cut(s) 294
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 2 cut(s) 265, 899
LmnI GCTCC 6 cut(s) 10, 88, 222, 913, 921, 928
Lsp1109I GCAGC 5 cut(s) 793, 848, 1006, 1039, 1142
LweI GCATC 4 cut(s) 49, 390, 673, 823
MaeI CTAG 1 cut(s) 642
MaeII ACGT 2 cut(s) 406, 700
MaeIII GTNAC 2 cut(s) 468, 1175
MalI GATC 2 cut(s) 267, 901
MboI GATC 2 cut(s) 265, 899
MboII GAAGA 5 cut(s) 754, 909, 1070, 1130, 1150
MflI RGATCY 1 cut(s) 899
MhlI GDGCHC 2 cut(s) 227, 918
MlsI TGGCCA 1 cut(s) 191
MluCI AATT 6 cut(s) 47, 203, 435, 678, 687, 864
MluNI TGGCCA 1 cut(s) 191
MlyI GAGTC 1 cut(s) 599
MmeI TCCRAC 1 cut(s) 1081
Mox20I TGGCCA 1 cut(s) 191
MroNI GCCGGC 1 cut(s) 292
MroXI GAANNNNTTC 1 cut(s) 1074
MscI TGGCCA 1 cut(s) 191
MseI TTAA 6 cut(s) 45, 171, 369, 414, 438, 1043
MslI CAYNNNNRTG 2 cut(s) 240, 761
Msp20I TGGCCA 1 cut(s) 191
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 1 cut(s) 293
MspR9I CCNGG 4 cut(s) 38, 215, 340, 504
Mva1269I GAATGC 1 cut(s) 403
MvaI CCWGG 4 cut(s) 38, 215, 340, 504
MvnI CGCG 2 cut(s) 778, 1116
MwoI GCNNNNNNNGC 5 cut(s) 100, 188, 387, 643, 928
NaeI GCCGGC 1 cut(s) 294
NdeII GATC 2 cut(s) 265, 899
NgoMIV GCCGGC 1 cut(s) 292
NlaIII CATG 8 cut(s) 170, 266, 433, 653, 725, 844, 907, 1027
NlaIV GGNNCC 5 cut(s) 12, 90, 231, 647, 930
NmeAIII GCCGAG 2 cut(s) 31, 206
NmuCI GTSAC 1 cut(s) 468
PctI GAATGC 1 cut(s) 403
PdiI GCCGGC 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 1074
PfeI GAWTC 2 cut(s) 302, 358
PflMI CCANNNNNTGG 1 cut(s) 27
PfoI TCCNGGA 1 cut(s) 36
PkrI GCNGC 6 cut(s) 93, 808, 838, 1021, 1029, 1132
PleI GAGTC 1 cut(s) 599
PpsI GAGTC 1 cut(s) 599
Psp124BI GAGCTC 2 cut(s) 227, 918
Psp1406I AACGTT 1 cut(s) 406
Psp6I CCWGG 4 cut(s) 36, 213, 338, 502
PspGI CCWGG 4 cut(s) 36, 213, 338, 502
PspN4I GGNNCC 5 cut(s) 12, 90, 231, 647, 930
PspPI GGNCC 3 cut(s) 30, 497, 1103
PsrI GAACNNNNNNTAC 2 cut(s) 741, 773
PstNI CAGNNNCTG 1 cut(s) 27
PsuI RGATCY 1 cut(s) 899
PvuII CAGCTG 1 cut(s) 182
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
RseI CAYNNNNRTG 2 cut(s) 240, 761
SacI GAGCTC 2 cut(s) 227, 918
SaqAI TTAA 6 cut(s) 45, 171, 369, 414, 438, 1043
SatI GCNGC 6 cut(s) 92, 807, 837, 1020, 1028, 1131
Sau3AI GATC 2 cut(s) 265, 899
Sau96I GGNCC 3 cut(s) 30, 497, 1103
ScaI AGTACT 1 cut(s) 452
SchI GAGTC 1 cut(s) 599
ScrFI CCNGG 4 cut(s) 38, 215, 340, 504
SduI GDGCHC 2 cut(s) 227, 918
SfaNI GCATC 4 cut(s) 49, 390, 673, 823
SinI GGWCC 2 cut(s) 30, 1103
SmiMI CAYNNNNRTG 2 cut(s) 240, 761
SmlI CTYRAG 1 cut(s) 854
SmoI CTYRAG 1 cut(s) 854
Sse9I AATT 6 cut(s) 47, 203, 435, 678, 687, 864
SsiI CCGC 4 cut(s) 86, 92, 275, 778
SspMI CTAG 1 cut(s) 642
SstI GAGCTC 2 cut(s) 227, 918
StyD4I CCNGG 4 cut(s) 36, 213, 338, 502
StyI CCWWGG 1 cut(s) 821
TaaI ACNGT 2 cut(s) 474, 1041
TaiI ACGT 2 cut(s) 409, 703
TaqI TCGA 2 cut(s) 239, 1000
TasI AATT 6 cut(s) 47, 203, 435, 678, 687, 864
TatI WGTACW 1 cut(s) 450
TauI GCSGC 1 cut(s) 94
TfiI GAWTC 2 cut(s) 302, 358
Tru1I TTAA 6 cut(s) 45, 171, 369, 414, 438, 1043
Tru9I TTAA 6 cut(s) 45, 171, 369, 414, 438, 1043
TscAI CASTG 3 cut(s) 115, 429, 930
TseFI GTSAC 1 cut(s) 468
TseI GCWGC 5 cut(s) 806, 836, 1019, 1027, 1130
Tsp45I GTSAC 1 cut(s) 468
TspDTI ATGAA 3 cut(s) 690, 738, 1101
TspGWI ACGGA 1 cut(s) 761
TspRI CASTG 3 cut(s) 115, 429, 930
Van91I CCANNNNNTGG 1 cut(s) 27
VpaK11BI GGWCC 2 cut(s) 30, 1103
XapI RAATTY 1 cut(s) 864
XcmI CCANNNNNNNNNTGG 1 cut(s) 369
XmnI GAANNNNTTC 1 cut(s) 1074
XspI CTAG 1 cut(s) 642
ZrmI AGTACT 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.