Rroxscaffold_1G00062360

Katanin p60 ATPase-containing subunit

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
84409205 .. 84413783
4579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00062360.1

Sequence Viewer

Length: 1188 bp
ATGTCCGATGAGCCTTCAGTCACTCGATGGACCTTTCCGGAATTTAAATTGTTTTATGATGCCAAGTTTGGTAGAAAGAAAGTGTCAGAGGAGACGCAAAGTGAGCAGGCAGCCACTAATGGAGCTGTGAGTAATGGGGGAGCTTCGGGCGCCACAGCGAATGGGAATGGTCATGTGAAAAACCAATCTGACTTGGCCATCTATGAGCGATATCGAAACCAGCAAGCTGCACAGTTGAGCGGAGTTTCATCTGATCCAAATCATGTGATCCCGAAATCTTTGCTTCCTGCTTTTGACTCTGCAGAAACACGTTCATTAGCAGAGAGTTTATGCAGGGATATAGTTCGTGGCGATCCGGATGTTAAGTGGGAAACCATTAAGGGGTTAGAGAATGCAAAACGTTTACTTAAAGAAGCAGTACTTTACTGGTCTCTTATCACCTTGGAAAGGTATTCTCCTTTTGGCCCTCCAGGGACAGGAAAGACTATGCTTGCGAAGGCTGTTGCAACAGAGTGCAAGACCACATTTTTCAACATTTCAGCATCATCAGTTGTCAGTAAATGGCGTGGTGACTCAGAGAAGTTAGTAAAGGTGTTATTTGAGCTCGCCAGGCACCATGCACCCTCAACTATATTTATTGACGAAATTGATGCAATTATTAGTCAACGTGGTGAAGCACGAAGTGAGCATGAAGCAAGTAGGCGTTTGAAAACGGAGCTTCTGATACAGATGGATGGTTTGACAAAGACAAATGAACTAGTGTTTGTTTTGGCCGCAACAAATCTTCCTTGGGAACTAGATGCAGCCATGCTCCGGCGTCTTGAAAAACGAATTCTTGTGCCTCTGCCTGAACCCGAAGCACGAAGAGCCATGTTTGAGGAGCTCCTGCCACTAGAGCCTGGTGAGGAGGAGCTTCCTTATGATTTGTTGGTGGATAAGACAGAAGGATATTCAGGTTCTGATATTAGGCTGGTGTGCAAGGAGGCTGCCATGCAGCCCCTGAGACGCCTAATGACACTCCTTGAAGACAAAGAGGAAGTGGTGCCTGAGGATGAACTGCCTAAGGTTGGACCAATCAAACACGATGACATTGAGACAGCTTTGAAGAACACAAGGCCATCTGCTCATCTCCAGGTTCATCGTTATGAGAAGTTCAATGCTGATTACGGCAGTCAAATACTCCAATGA

Protein Analysis

395

Amino Acids

44.25

Weight (kDa)

5.5

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 154 - 282 1e-39 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 307 - 344 4.3e-12 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 149, 612, 1042
AccBSI CCGCTC 1 cut(s) 240
AccIII TCCGGA 2 cut(s) 37, 355
AciI CCGC 2 cut(s) 240, 774
AclI AACGTT 1 cut(s) 400
AclWI GGATC 3 cut(s) 248, 262, 347
AcoI YGGCCR 2 cut(s) 195, 771
AcsI RAATTY 2 cut(s) 41, 831
AcyI GRCGYC 3 cut(s) 150, 817, 1006
AdeI CACNNNGTG 1 cut(s) 683
AfaI GTAC 1 cut(s) 420
AfiI CCNNNNNNNGG 5 cut(s) 381, 447, 476, 813, 1067
AflIII ACRYGT 1 cut(s) 308
AgsI TTSAA 6 cut(s) 532, 709, 824, 1025, 1105, 1156
AhlI ACTAGT 1 cut(s) 757
AjnI CCWGG 4 cut(s) 469, 608, 898, 1131
AluBI AGCT 8 cut(s) 125, 143, 227, 604, 718, 883, 913, 1100
AluI AGCT 8 cut(s) 125, 143, 227, 604, 718, 883, 913, 1100
Alw21I GWGCWC 2 cut(s) 606, 885
Alw26I GTCTC 4 cut(s) 86, 435, 997, 1088
AlwI GGATC 3 cut(s) 248, 262, 347
AlwNI CAGNNNCTG 2 cut(s) 959, 1000
Aor13HI TCCGGA 2 cut(s) 37, 355
AoxI GGCC 4 cut(s) 195, 463, 771, 1115
ApeKI GCWGC 5 cut(s) 110, 227, 803, 986, 994
ApoI RAATTY 2 cut(s) 41, 831
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 3 cut(s) 30, 464, 1070
AsuHPI GGTGA 4 cut(s) 430, 581, 683, 914
AvaII GGWCC 2 cut(s) 30, 1070
AxyI CCTNAGG 2 cut(s) 1047, 1062
BalI TGGCCA 1 cut(s) 197
BanI GGYRCC 3 cut(s) 149, 612, 1042
BanII GRGCYC 2 cut(s) 606, 885
BbsI GAAGAC 1 cut(s) 1032
Bbv12I GWGCWC 2 cut(s) 606, 885
BbvI GCAGC 5 cut(s) 122, 214, 815, 973, 1006
BccI CCATC 5 cut(s) 21, 206, 724, 728, 1126
BceAI ACGGC 1 cut(s) 1183
BcgI CGANNNNNNTGC 4 cut(s) 262, 296, 632, 666
BciT130I CCWGG 4 cut(s) 471, 610, 900, 1133
BcoDI GTCTC 4 cut(s) 86, 435, 997, 1088
BcuI ACTAGT 1 cut(s) 757
BfaI CTAG 3 cut(s) 758, 797, 893
BfmI CTRYAG 1 cut(s) 300
BfoI RGCGCY 1 cut(s) 153
BisI GCNGC 6 cut(s) 111, 228, 774, 804, 987, 995
BlsI GCNGC 6 cut(s) 112, 229, 775, 805, 988, 996
BmcAI AGTACT 1 cut(s) 420
Bme1390I CCNGG 4 cut(s) 471, 610, 900, 1133
Bme18I GGWCC 2 cut(s) 30, 1070
BmgT120I GGNCC 3 cut(s) 30, 464, 1070
BmiI GGNNCC 3 cut(s) 151, 614, 1044
BmrFI CCNGG 4 cut(s) 471, 610, 900, 1133
BmsI GCATC 4 cut(s) 49, 551, 640, 790
BpiI GAAGAC 1 cut(s) 1032
BpmI CTGGAG 2 cut(s) 453, 1115
BsaBI GATNNNNATC 1 cut(s) 258
BsaHI GRCGYC 3 cut(s) 150, 817, 1006
BsaI GGTCTC 1 cut(s) 435
BsaJI CCNNGG 3 cut(s) 441, 470, 788
BsaWI WCCGGW 2 cut(s) 37, 355
Bsc4I CCNNNNNNNGG 5 cut(s) 381, 447, 476, 813, 1067
Bse1I ACTGG 1 cut(s) 431
Bse21I CCTNAGG 2 cut(s) 1047, 1062
Bse8I GATNNNNATC 1 cut(s) 258
BseAI TCCGGA 2 cut(s) 37, 355
BseBI CCWGG 4 cut(s) 471, 610, 900, 1133
BseDI CCNNGG 3 cut(s) 441, 470, 788
BseGI GGATG 3 cut(s) 364, 739, 1057
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 5 cut(s) 381, 447, 476, 813, 1067
BseMII CTCAG 3 cut(s) 588, 992, 1038
BseNI ACTGG 1 cut(s) 431
BseRI GAGGAG 4 cut(s) 104, 893, 920, 923
BseXI GCAGC 5 cut(s) 122, 214, 815, 973, 1006
BsgI GTGCAG 1 cut(s) 213
BshFI GGCC 4 cut(s) 197, 465, 773, 1117
BshNI GGYRCC 3 cut(s) 149, 612, 1042
BsiHKAI GWGCWC 2 cut(s) 606, 885
BsiSI CCGG 3 cut(s) 38, 356, 814
BslFI GGGAC 1 cut(s) 487
BslI CCNNNNNNNGG 5 cut(s) 381, 447, 476, 813, 1067
BsmAI GTCTC 4 cut(s) 86, 435, 997, 1088
BsmBI CGTCTC 2 cut(s) 86, 997
BsmFI GGGAC 1 cut(s) 487
BsmI GAATGC 1 cut(s) 397
BsnI GGCC 4 cut(s) 197, 465, 773, 1117
Bso31I GGTCTC 1 cut(s) 435
Bsp1286I GDGCHC 2 cut(s) 606, 885
Bsp13I TCCGGA 2 cut(s) 37, 355
Bsp143I GATC 3 cut(s) 253, 267, 352
BspACI CCGC 2 cut(s) 240, 774
BspANI GGCC 4 cut(s) 197, 465, 773, 1117
BspCNI CTCAG 3 cut(s) 587, 993, 1039
BspEI TCCGGA 2 cut(s) 37, 355
BspLI GGNNCC 3 cut(s) 151, 614, 1044
BspMAI CTGCAG 1 cut(s) 304
BspPI GGATC 3 cut(s) 248, 262, 347
BspQI GCTCTTC 1 cut(s) 859
BspT107I GGYRCC 3 cut(s) 149, 612, 1042
BspTNI GGTCTC 1 cut(s) 435
BsrBI CCGCTC 1 cut(s) 240
BsrI ACTGG 1 cut(s) 431
BssECI CCNNGG 3 cut(s) 441, 470, 788
BssMI GATC 3 cut(s) 253, 267, 352
BssNI GRCGYC 3 cut(s) 150, 817, 1006
BssT1I CCWWGG 2 cut(s) 441, 788
Bst2UI CCWGG 4 cut(s) 471, 610, 900, 1133
Bst4CI ACNGT 1 cut(s) 234
Bst6I CTCTTC 1 cut(s) 859
BstACI GRCGYC 3 cut(s) 150, 817, 1006
BstC8I GCNNGC 4 cut(s) 108, 225, 492, 606
BstDEI CTNAG 4 cut(s) 574, 1001, 1047, 1062
BstENI CCTNNNNNAGG 1 cut(s) 445
BstF5I GGATG 3 cut(s) 364, 739, 1057
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 3 cut(s) 256, 270, 355
BstMAI GTCTC 4 cut(s) 86, 435, 997, 1088
BstMBI GATC 3 cut(s) 253, 267, 352
BstMWI GCNNNNNNNGC 5 cut(s) 103, 149, 610, 866, 895
BstNI CCWGG 4 cut(s) 471, 610, 900, 1133
BstSCI CCNGG 4 cut(s) 469, 608, 898, 1131
BstSFI CTRYAG 1 cut(s) 300
BstV1I GCAGC 5 cut(s) 122, 214, 815, 973, 1006
BstV2I GAAGAC 1 cut(s) 1032
Bsu36I CCTNAGG 2 cut(s) 1047, 1062
BsuRI GGCC 4 cut(s) 197, 465, 773, 1117
BtsCI GGATG 3 cut(s) 364, 739, 1057
Cac8I GCNNGC 4 cut(s) 108, 225, 492, 606
CaiI CAGNNNCTG 2 cut(s) 959, 1000
CfoI GCGC 1 cut(s) 152
Cfr13I GGNCC 3 cut(s) 30, 464, 1070
CseI GACGC 3 cut(s) 103, 806, 1014
Csp6I GTAC 1 cut(s) 419
CviAII CATG 7 cut(s) 173, 263, 617, 689, 808, 871, 991
CviQI GTAC 1 cut(s) 419
DdeI CTNAG 4 cut(s) 574, 1001, 1047, 1062
DinI GGCGCC 1 cut(s) 151
DpnI GATC 3 cut(s) 255, 269, 354
DpnII GATC 3 cut(s) 253, 267, 352
DraI TTTAAA 1 cut(s) 46
DraIII CACNNNGTG 1 cut(s) 683
EaeI YGGCCR 2 cut(s) 195, 771
Eam1104I CTCTTC 1 cut(s) 859
EarI CTCTTC 1 cut(s) 859
Ecl136II GAGCTC 2 cut(s) 604, 883
Eco130I CCWWGG 2 cut(s) 441, 788
Eco24I GRGCYC 2 cut(s) 606, 885
Eco31I GGTCTC 1 cut(s) 435
Eco32I GATATC 1 cut(s) 212
Eco47I GGWCC 2 cut(s) 30, 1070
Eco53kI GAGCTC 2 cut(s) 604, 883
Eco81I CCTNAGG 2 cut(s) 1047, 1062
EcoICRI GAGCTC 2 cut(s) 604, 883
EcoNI CCTNNNNNAGG 1 cut(s) 445
EcoRI GAATTC 1 cut(s) 831
EcoRII CCWGG 4 cut(s) 469, 608, 898, 1131
EcoRV GATATC 1 cut(s) 212
EcoT14I CCWWGG 2 cut(s) 441, 788
EcoT38I GRGCYC 2 cut(s) 606, 885
EgeI GGCGCC 1 cut(s) 151
EheI GGCGCC 1 cut(s) 151
ErhI CCWWGG 2 cut(s) 441, 788
Esp3I CGTCTC 2 cut(s) 86, 997
FaeI CATG 7 cut(s) 176, 266, 620, 692, 811, 874, 994
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FaqI GGGAC 1 cut(s) 487
FatI CATG 7 cut(s) 172, 262, 616, 688, 807, 870, 990
Fnu4HI GCNGC 6 cut(s) 111, 228, 774, 804, 987, 995
FokI GGATG 3 cut(s) 371, 746, 1064
FriOI GRGCYC 2 cut(s) 606, 885
Fsp4HI GCNGC 6 cut(s) 111, 228, 774, 804, 987, 995
FspBI CTAG 3 cut(s) 758, 797, 893
GlaI GCGC 1 cut(s) 151
GluI GCNGC 6 cut(s) 111, 228, 774, 804, 987, 995
GsuI CTGGAG 2 cut(s) 453, 1115
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 4 cut(s) 197, 465, 773, 1117
HapII CCGG 3 cut(s) 38, 356, 814
HgaI GACGC 3 cut(s) 103, 806, 1014
HhaI GCGC 1 cut(s) 152
Hin1I GRCGYC 3 cut(s) 150, 817, 1006
Hin1II CATG 7 cut(s) 176, 266, 620, 692, 811, 874, 994
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HincII GTYRAC 1 cut(s) 665
HindII GTYRAC 1 cut(s) 665
HinfI GANTC 2 cut(s) 296, 572
HpaII CCGG 3 cut(s) 38, 356, 814
HphI GGTGA 4 cut(s) 430, 581, 683, 914
Hpy166II GTNNAC 2 cut(s) 404, 665
Hpy188I TCNGA 7 cut(s) 7, 88, 190, 253, 577, 723, 961
Hpy188III TCNNGA 4 cut(s) 38, 271, 356, 821
Hpy8I GTNNAC 2 cut(s) 404, 665
HpyAV CCTTC 3 cut(s) 24, 490, 938
HpyCH4III ACNGT 1 cut(s) 234
HpyCH4IV ACGT 3 cut(s) 310, 400, 667
HpyF10VI GCNNNNNNNGC 5 cut(s) 103, 149, 610, 866, 895
HpyF3I CTNAG 4 cut(s) 574, 1001, 1047, 1062
HpySE526I ACGT 3 cut(s) 310, 400, 667
Hsp92I GRCGYC 3 cut(s) 150, 817, 1006
Hsp92II CATG 7 cut(s) 176, 266, 620, 692, 811, 874, 994
HspAI GCGC 1 cut(s) 150
KasI GGCGCC 1 cut(s) 149
Kpn2I TCCGGA 2 cut(s) 37, 355
Kzo9I GATC 3 cut(s) 253, 267, 352
LguI GCTCTTC 1 cut(s) 859
LmnI GCTCC 7 cut(s) 122, 140, 715, 816, 880, 888, 910
Lsp1109I GCAGC 5 cut(s) 122, 214, 815, 973, 1006
LweI GCATC 4 cut(s) 49, 551, 640, 790
MaeI CTAG 3 cut(s) 758, 797, 893
MaeII ACGT 3 cut(s) 310, 400, 667
MaeIII GTNAC 2 cut(s) 19, 569
MalI GATC 3 cut(s) 255, 269, 354
MbiI CCGCTC 1 cut(s) 240
MboI GATC 3 cut(s) 253, 267, 352
MboII GAAGA 4 cut(s) 776, 876, 1037, 1117
MhlI GDGCHC 2 cut(s) 606, 885
MlsI TGGCCA 1 cut(s) 197
MluCI AATT 5 cut(s) 41, 47, 645, 654, 831
MluNI TGGCCA 1 cut(s) 197
Mly113I GGCGCC 1 cut(s) 150
MlyI GAGTC 2 cut(s) 290, 566
MmeI TCCRAC 1 cut(s) 1048
Mox20I TGGCCA 1 cut(s) 197
MroI TCCGGA 2 cut(s) 37, 355
MscI TGGCCA 1 cut(s) 197
MseI TTAA 4 cut(s) 45, 363, 378, 408
MslI CAYNNNNRTG 1 cut(s) 1143
Msp20I TGGCCA 1 cut(s) 197
MspI CCGG 3 cut(s) 38, 356, 814
MspR9I CCNGG 4 cut(s) 471, 610, 900, 1133
Mva1269I GAATGC 1 cut(s) 397
MvaI CCWGG 4 cut(s) 471, 610, 900, 1133
MwoI GCNNNNNNNGC 5 cut(s) 103, 149, 610, 866, 895
NarI GGCGCC 1 cut(s) 150
NdeII GATC 3 cut(s) 253, 267, 352
NlaIII CATG 7 cut(s) 176, 266, 620, 692, 811, 874, 994
NlaIV GGNNCC 3 cut(s) 151, 614, 1044
NmuCI GTSAC 2 cut(s) 19, 569
PciSI GCTCTTC 1 cut(s) 859
PctI GAATGC 1 cut(s) 397
PkrI GCNGC 6 cut(s) 112, 229, 775, 805, 988, 996
PleI GAGTC 2 cut(s) 290, 566
PluTI GGCGCC 1 cut(s) 153
PpsI GAGTC 2 cut(s) 290, 566
Psp124BI GAGCTC 2 cut(s) 606, 885
Psp1406I AACGTT 1 cut(s) 400
Psp6I CCWGG 4 cut(s) 469, 608, 898, 1131
PspGI CCWGG 4 cut(s) 469, 608, 898, 1131
PspN4I GGNNCC 3 cut(s) 151, 614, 1044
PspPI GGNCC 3 cut(s) 30, 464, 1070
PstI CTGCAG 1 cut(s) 304
PstNI CAGNNNCTG 2 cut(s) 959, 1000
RsaI GTAC 1 cut(s) 420
RsaNI GTAC 1 cut(s) 419
RseI CAYNNNNRTG 1 cut(s) 1143
SacI GAGCTC 2 cut(s) 606, 885
SapI GCTCTTC 1 cut(s) 859
SaqAI TTAA 4 cut(s) 45, 363, 378, 408
SatI GCNGC 6 cut(s) 111, 228, 774, 804, 987, 995
Sau3AI GATC 3 cut(s) 253, 267, 352
Sau96I GGNCC 3 cut(s) 30, 464, 1070
ScaI AGTACT 1 cut(s) 420
SchI GAGTC 2 cut(s) 290, 566
ScrFI CCNGG 4 cut(s) 471, 610, 900, 1133
SduI GDGCHC 2 cut(s) 606, 885
SfaNI GCATC 4 cut(s) 49, 551, 640, 790
SfcI CTRYAG 1 cut(s) 300
SfoI GGCGCC 1 cut(s) 151
SinI GGWCC 2 cut(s) 30, 1070
SmiI ATTTAAAT 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 1143
SpeI ACTAGT 1 cut(s) 757
Sse9I AATT 5 cut(s) 41, 47, 645, 654, 831
SsiI CCGC 2 cut(s) 240, 774
SspDI GGCGCC 1 cut(s) 149
SspMI CTAG 3 cut(s) 758, 797, 893
SstI GAGCTC 2 cut(s) 606, 885
StyD4I CCNGG 4 cut(s) 469, 608, 898, 1131
StyI CCWWGG 2 cut(s) 441, 788
SwaI ATTTAAAT 1 cut(s) 46
TaaI ACNGT 1 cut(s) 234
TaiI ACGT 3 cut(s) 313, 403, 670
TaqI TCGA 2 cut(s) 25, 214
TasI AATT 5 cut(s) 41, 47, 645, 654, 831
TatI WGTACW 1 cut(s) 418
TauI GCSGC 1 cut(s) 776
Tru1I TTAA 4 cut(s) 45, 363, 378, 408
Tru9I TTAA 4 cut(s) 45, 363, 378, 408
TseFI GTSAC 2 cut(s) 19, 569
TseI GCWGC 5 cut(s) 110, 227, 803, 986, 994
Tsp45I GTSAC 2 cut(s) 19, 569
TspDTI ATGAA 6 cut(s) 237, 303, 705, 768, 1068, 1127
TspGWI ACGGA 1 cut(s) 728
VpaK11BI GGWCC 2 cut(s) 30, 1070
XagI CCTNNNNNAGG 1 cut(s) 445
XapI RAATTY 2 cut(s) 41, 831
XspI CTAG 3 cut(s) 758, 797, 893
ZrmI AGTACT 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.