RLG00000032091

Katanin p60 ATPase-containing subunit

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
10832127 .. 10836658
4532 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032091

Sequence Viewer

Length: 1209 bp
ATGTCCGATGAGCCTTCAGTCACTCGATGGACCTTTCCGGAATTTAAATTGTTTTATGATGCCAAGTTTGGTAGAAAGAAAGTGTCGGAGGAAACGCAAAGTGAGCAGGCAGCCACTAATGGAGCTGTGAGTAATGGGGGAGCTTCGGGCGCCACAGCGAATGGTCATGTGAAAAACCAATCTGATTTGGCCATCTATGAGCGATATCGAAACCAGGAAGCTGCACAGTTGAGTGGAGTTTCATCTGATCCAAATCATGTGATCCCGAAATCTTTGCTTCCTGCTTTTGACTCTGCAGAAACACGTTCATTAGCAGAGAGTTTATGCAGGGATATAGTTCGTGGTGATCCAGATGTTAAGTGGGAAACCATTAAGGGGTTAGAGAATGCTAAACGTTTACTTAAAGAAGCAGTGGTCATGCCGATTAAGTATCCCAAGTACTTTACTGGTCTCTTATCACCTTGGAAAGGTATTCTCCTTTTTGGCCCTCCAGGGACAGGAAAGACTATGCTTGCGAAGGCTGTTGCAACAGAGTGCAAGACCACATTTTTCAATATTTCAGCATCATCAGTTGTCAGTAAATGGCGAGGTGACTCAGAGAAGTTAGTGAAGGTGTTATTTGAGCTCGCCAGGCACCATGCACCCTCAACTATATTTATTGACGAAATTGATGCAATTATTAGTCAACGTGGTGAAGCACGAAGTGAGCATGAAGCAAGTAGGCGTTTGAAAACGGAGCTTCTGATACAGATGGATGGTTTGACGAAGACAAATGAACTAGTGTTTGTTTTGGCCGCAACAAATCTTCCTTGGGAACTAGATGCAGCCATGCTCCGGCGTCTTGAAAAACGAATTCTTGTGCCCCTGCCTGAACCCGAAGCACGAAGAGCCATGTTTGAGGAGCTCCTGCCACTAGAGCCTGGTCAGGAGGAGCTTCCATATGATTTGTTGGTGGATAAGACAGAAGGATATTCAGGTTCTGATATTCGGCTGGTGTGCAAGGAGGCTGCCATGCAGCCCCTGAGACGCCTAATGACACTCCTTGAAGACAAAGAGGAAGTGGTGCCTGAGGATGAACTGCCTAAGGTTGGACCAATCAAACACGATGACATTGAGGCAGCTTTGAAGAACACAAGGCCATCTGCTCATCTCCAGGCTCATCGTTATGAGAAGTTCAATGCTGATTACGGCAGTCAAATACTCCAATGA

Protein Analysis

403

Amino Acids

44.94

Weight (kDa)

5.78

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 158 - 289 2.2e-41 ATPase family associated with various cellular activities (AAA)
RuvB_N PF05496 158 - 228 3.1e-06 Holliday junction DNA helicase RuvB P-loop domain
AAA_lid_3 PF17862 314 - 351 4.4e-12 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 149, 633, 1063
AccIII TCCGGA 1 cut(s) 37
AciI CCGC 1 cut(s) 795
AclI AACGTT 1 cut(s) 394
AclWI GGATC 3 cut(s) 242, 256, 341
AcoI YGGCCR 2 cut(s) 189, 792
AcsI RAATTY 2 cut(s) 41, 852
AcyI GRCGYC 3 cut(s) 150, 838, 1027
AdeI CACNNNGTG 1 cut(s) 704
AfaI GTAC 1 cut(s) 440
AfiI CCNNNNNNNGG 5 cut(s) 375, 467, 497, 834, 1088
AflIII ACRYGT 1 cut(s) 302
AgsI TTSAA 6 cut(s) 553, 730, 845, 1046, 1126, 1177
AhlI ACTAGT 1 cut(s) 778
AjnI CCWGG 5 cut(s) 213, 490, 629, 919, 1152
AluBI AGCT 8 cut(s) 125, 143, 221, 625, 739, 904, 934, 1121
AluI AGCT 8 cut(s) 125, 143, 221, 625, 739, 904, 934, 1121
Alw21I GWGCWC 2 cut(s) 627, 906
Alw26I GTCTC 2 cut(s) 455, 1018
AlwI GGATC 3 cut(s) 242, 256, 341
AlwNI CAGNNNCTG 2 cut(s) 980, 1021
Aor13HI TCCGGA 1 cut(s) 37
AoxI GGCC 4 cut(s) 189, 484, 792, 1136
ApeKI GCWGC 6 cut(s) 110, 221, 824, 1007, 1015, 1118
ApoI RAATTY 2 cut(s) 41, 852
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 3 cut(s) 30, 485, 1091
AsuHPI GGTGA 4 cut(s) 356, 450, 602, 704
AvaII GGWCC 2 cut(s) 30, 1091
AxyI CCTNAGG 2 cut(s) 1068, 1083
BaeGI GKGCMC 1 cut(s) 864
BalI TGGCCA 1 cut(s) 191
BanI GGYRCC 3 cut(s) 149, 633, 1063
BanII GRGCYC 2 cut(s) 627, 906
BbsI GAAGAC 2 cut(s) 773, 1053
Bbv12I GWGCWC 2 cut(s) 627, 906
BbvI GCAGC 6 cut(s) 122, 208, 836, 994, 1027, 1130
BccI CCATC 5 cut(s) 21, 200, 745, 749, 1147
BceAI ACGGC 1 cut(s) 1204
BcgI CGANNNNNNTGC 4 cut(s) 256, 290, 653, 687
BciT130I CCWGG 5 cut(s) 215, 492, 631, 921, 1154
BciVI GTATCC 1 cut(s) 441
BcoDI GTCTC 2 cut(s) 455, 1018
BcuI ACTAGT 1 cut(s) 778
BfaI CTAG 3 cut(s) 779, 818, 914
BfmI CTRYAG 1 cut(s) 294
BfoI RGCGCY 1 cut(s) 153
BfuI GTATCC 1 cut(s) 441
BisI GCNGC 7 cut(s) 111, 222, 795, 825, 1008, 1016, 1119
BlsI GCNGC 7 cut(s) 112, 223, 796, 826, 1009, 1017, 1120
BmcAI AGTACT 1 cut(s) 440
Bme1390I CCNGG 5 cut(s) 215, 492, 631, 921, 1154
Bme18I GGWCC 2 cut(s) 30, 1091
BmgT120I GGNCC 3 cut(s) 30, 485, 1091
BmiI GGNNCC 3 cut(s) 151, 635, 1065
BmrFI CCNGG 5 cut(s) 215, 492, 631, 921, 1154
BmsI GCATC 4 cut(s) 49, 572, 661, 811
BpiI GAAGAC 2 cut(s) 773, 1053
BpmI CTGGAG 2 cut(s) 474, 1136
BsaBI GATNNNNATC 1 cut(s) 252
BsaHI GRCGYC 3 cut(s) 150, 838, 1027
BsaI GGTCTC 1 cut(s) 455
BsaJI CCNNGG 3 cut(s) 461, 491, 809
BsaWI WCCGGW 1 cut(s) 37
Bsc4I CCNNNNNNNGG 5 cut(s) 375, 467, 497, 834, 1088
Bse1I ACTGG 1 cut(s) 451
Bse21I CCTNAGG 2 cut(s) 1068, 1083
Bse8I GATNNNNATC 1 cut(s) 252
BseAI TCCGGA 1 cut(s) 37
BseBI CCWGG 5 cut(s) 215, 492, 631, 921, 1154
BseDI CCNNGG 3 cut(s) 461, 491, 809
BseGI GGATG 2 cut(s) 760, 1078
BseJI GATNNNNATC 1 cut(s) 252
BseLI CCNNNNNNNGG 5 cut(s) 375, 467, 497, 834, 1088
BseMII CTCAG 3 cut(s) 609, 1013, 1059
BseNI ACTGG 1 cut(s) 451
BseRI GAGGAG 2 cut(s) 914, 944
BseSI GKGCMC 1 cut(s) 864
BseXI GCAGC 6 cut(s) 122, 208, 836, 994, 1027, 1130
BsgI GTGCAG 1 cut(s) 207
BshFI GGCC 4 cut(s) 191, 486, 794, 1138
BshNI GGYRCC 3 cut(s) 149, 633, 1063
BsiHKAI GWGCWC 2 cut(s) 627, 906
BsiSI CCGG 2 cut(s) 38, 835
BslFI GGGAC 1 cut(s) 508
BslI CCNNNNNNNGG 5 cut(s) 375, 467, 497, 834, 1088
BsmAI GTCTC 2 cut(s) 455, 1018
BsmBI CGTCTC 1 cut(s) 1018
BsmFI GGGAC 1 cut(s) 508
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 4 cut(s) 191, 486, 794, 1138
Bso31I GGTCTC 1 cut(s) 455
Bsp1286I GDGCHC 3 cut(s) 627, 864, 906
Bsp13I TCCGGA 1 cut(s) 37
Bsp143I GATC 3 cut(s) 247, 261, 346
BspACI CCGC 1 cut(s) 795
BspANI GGCC 4 cut(s) 191, 486, 794, 1138
BspCNI CTCAG 3 cut(s) 608, 1014, 1060
BspEI TCCGGA 1 cut(s) 37
BspLI GGNNCC 3 cut(s) 151, 635, 1065
BspMAI CTGCAG 1 cut(s) 298
BspPI GGATC 3 cut(s) 242, 256, 341
BspQI GCTCTTC 1 cut(s) 880
BspT107I GGYRCC 3 cut(s) 149, 633, 1063
BspTNI GGTCTC 1 cut(s) 455
BsrI ACTGG 1 cut(s) 451
BssECI CCNNGG 3 cut(s) 461, 491, 809
BssMI GATC 3 cut(s) 247, 261, 346
BssNI GRCGYC 3 cut(s) 150, 838, 1027
BssT1I CCWWGG 2 cut(s) 461, 809
Bst2UI CCWGG 5 cut(s) 215, 492, 631, 921, 1154
Bst4CI ACNGT 1 cut(s) 228
Bst6I CTCTTC 1 cut(s) 880
BstACI GRCGYC 3 cut(s) 150, 838, 1027
BstC8I GCNNGC 3 cut(s) 108, 513, 627
BstDEI CTNAG 4 cut(s) 595, 1022, 1068, 1083
BstENI CCTNNNNNAGG 1 cut(s) 465
BstF5I GGATG 2 cut(s) 760, 1078
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 3 cut(s) 250, 264, 349
BstMAI GTCTC 2 cut(s) 455, 1018
BstMBI GATC 3 cut(s) 247, 261, 346
BstMWI GCNNNNNNNGC 5 cut(s) 103, 149, 631, 887, 916
BstNI CCWGG 5 cut(s) 215, 492, 631, 921, 1154
BstSCI CCNGG 5 cut(s) 213, 490, 629, 919, 1152
BstSFI CTRYAG 1 cut(s) 294
BstSLI GKGCMC 1 cut(s) 864
BstV1I GCAGC 6 cut(s) 122, 208, 836, 994, 1027, 1130
BstV2I GAAGAC 2 cut(s) 773, 1053
Bsu36I CCTNAGG 2 cut(s) 1068, 1083
BsuI GTATCC 1 cut(s) 441
BsuRI GGCC 4 cut(s) 191, 486, 794, 1138
BtsCI GGATG 2 cut(s) 760, 1078
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 1 cut(s) 417
Cac8I GCNNGC 3 cut(s) 108, 513, 627
CaiI CAGNNNCTG 2 cut(s) 980, 1021
CfoI GCGC 1 cut(s) 152
Cfr13I GGNCC 3 cut(s) 30, 485, 1091
CseI GACGC 2 cut(s) 827, 1035
Csp6I GTAC 1 cut(s) 439
CviAII CATG 8 cut(s) 167, 257, 418, 638, 710, 829, 892, 1012
CviQI GTAC 1 cut(s) 439
DdeI CTNAG 4 cut(s) 595, 1022, 1068, 1083
DinI GGCGCC 1 cut(s) 151
DpnI GATC 3 cut(s) 249, 263, 348
DpnII GATC 3 cut(s) 247, 261, 346
DraI TTTAAA 1 cut(s) 46
DraIII CACNNNGTG 1 cut(s) 704
EaeI YGGCCR 2 cut(s) 189, 792
Eam1104I CTCTTC 1 cut(s) 880
EarI CTCTTC 1 cut(s) 880
Ecl136II GAGCTC 2 cut(s) 625, 904
Eco130I CCWWGG 2 cut(s) 461, 809
Eco24I GRGCYC 2 cut(s) 627, 906
Eco31I GGTCTC 1 cut(s) 455
Eco32I GATATC 1 cut(s) 206
Eco47I GGWCC 2 cut(s) 30, 1091
Eco53kI GAGCTC 2 cut(s) 625, 904
Eco81I CCTNAGG 2 cut(s) 1068, 1083
EcoICRI GAGCTC 2 cut(s) 625, 904
EcoNI CCTNNNNNAGG 1 cut(s) 465
EcoRI GAATTC 1 cut(s) 852
EcoRII CCWGG 5 cut(s) 213, 490, 629, 919, 1152
EcoRV GATATC 1 cut(s) 206
EcoT14I CCWWGG 2 cut(s) 461, 809
EcoT38I GRGCYC 2 cut(s) 627, 906
EgeI GGCGCC 1 cut(s) 151
EheI GGCGCC 1 cut(s) 151
ErhI CCWWGG 2 cut(s) 461, 809
Esp3I CGTCTC 1 cut(s) 1018
FaeI CATG 8 cut(s) 170, 260, 421, 641, 713, 832, 895, 1015
FaqI GGGAC 1 cut(s) 508
FatI CATG 8 cut(s) 166, 256, 417, 637, 709, 828, 891, 1011
FauNDI CATATG 1 cut(s) 940
Fnu4HI GCNGC 7 cut(s) 111, 222, 795, 825, 1008, 1016, 1119
FokI GGATG 2 cut(s) 767, 1085
FriOI GRGCYC 2 cut(s) 627, 906
Fsp4HI GCNGC 7 cut(s) 111, 222, 795, 825, 1008, 1016, 1119
FspBI CTAG 3 cut(s) 779, 818, 914
GlaI GCGC 1 cut(s) 151
GluI GCNGC 7 cut(s) 111, 222, 795, 825, 1008, 1016, 1119
GsuI CTGGAG 2 cut(s) 474, 1136
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 4 cut(s) 191, 486, 794, 1138
HapII CCGG 2 cut(s) 38, 835
HgaI GACGC 2 cut(s) 827, 1035
HhaI GCGC 1 cut(s) 152
Hin1I GRCGYC 3 cut(s) 150, 838, 1027
Hin1II CATG 8 cut(s) 170, 260, 421, 641, 713, 832, 895, 1015
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HincII GTYRAC 1 cut(s) 686
HindII GTYRAC 1 cut(s) 686
HinfI GANTC 2 cut(s) 290, 593
HpaII CCGG 2 cut(s) 38, 835
HphI GGTGA 4 cut(s) 356, 450, 602, 704
Hpy166II GTNNAC 2 cut(s) 398, 686
Hpy188I TCNGA 7 cut(s) 7, 88, 184, 247, 598, 744, 982
Hpy188III TCNNGA 5 cut(s) 38, 265, 350, 842, 926
Hpy8I GTNNAC 2 cut(s) 398, 686
HpyAV CCTTC 4 cut(s) 24, 511, 604, 959
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4IV ACGT 3 cut(s) 304, 394, 688
HpyF10VI GCNNNNNNNGC 5 cut(s) 103, 149, 631, 887, 916
HpyF3I CTNAG 4 cut(s) 595, 1022, 1068, 1083
HpySE526I ACGT 3 cut(s) 304, 394, 688
Hsp92I GRCGYC 3 cut(s) 150, 838, 1027
Hsp92II CATG 8 cut(s) 170, 260, 421, 641, 713, 832, 895, 1015
HspAI GCGC 1 cut(s) 150
KasI GGCGCC 1 cut(s) 149
Kpn2I TCCGGA 1 cut(s) 37
Kzo9I GATC 3 cut(s) 247, 261, 346
LguI GCTCTTC 1 cut(s) 880
LmnI GCTCC 7 cut(s) 122, 140, 736, 837, 901, 909, 931
Lsp1109I GCAGC 6 cut(s) 122, 208, 836, 994, 1027, 1130
LweI GCATC 4 cut(s) 49, 572, 661, 811
MaeI CTAG 3 cut(s) 779, 818, 914
MaeII ACGT 3 cut(s) 304, 394, 688
MaeIII GTNAC 2 cut(s) 19, 590
MalI GATC 3 cut(s) 249, 263, 348
MboI GATC 3 cut(s) 247, 261, 346
MboII GAAGA 5 cut(s) 778, 797, 897, 1058, 1138
MhlI GDGCHC 3 cut(s) 627, 864, 906
MlsI TGGCCA 1 cut(s) 191
MluCI AATT 5 cut(s) 41, 47, 666, 675, 852
MluNI TGGCCA 1 cut(s) 191
Mly113I GGCGCC 1 cut(s) 150
MlyI GAGTC 2 cut(s) 284, 587
MmeI TCCRAC 2 cut(s) 66, 1069
Mox20I TGGCCA 1 cut(s) 191
MroI TCCGGA 1 cut(s) 37
MscI TGGCCA 1 cut(s) 191
MseI TTAA 5 cut(s) 45, 357, 372, 402, 426
MslI CAYNNNNRTG 1 cut(s) 1164
Msp20I TGGCCA 1 cut(s) 191
MspI CCGG 2 cut(s) 38, 835
MspR9I CCNGG 5 cut(s) 215, 492, 631, 921, 1154
Mva1269I GAATGC 1 cut(s) 391
MvaI CCWGG 5 cut(s) 215, 492, 631, 921, 1154
MwoI GCNNNNNNNGC 5 cut(s) 103, 149, 631, 887, 916
NarI GGCGCC 1 cut(s) 150
NdeI CATATG 1 cut(s) 940
NdeII GATC 3 cut(s) 247, 261, 346
NlaIII CATG 8 cut(s) 170, 260, 421, 641, 713, 832, 895, 1015
NlaIV GGNNCC 3 cut(s) 151, 635, 1065
NmuCI GTSAC 2 cut(s) 19, 590
PciSI GCTCTTC 1 cut(s) 880
PctI GAATGC 1 cut(s) 391
PkrI GCNGC 7 cut(s) 112, 223, 796, 826, 1009, 1017, 1120
PleI GAGTC 2 cut(s) 284, 587
PluTI GGCGCC 1 cut(s) 153
PpsI GAGTC 2 cut(s) 284, 587
Psp124BI GAGCTC 2 cut(s) 627, 906
Psp1406I AACGTT 1 cut(s) 394
Psp6I CCWGG 5 cut(s) 213, 490, 629, 919, 1152
PspGI CCWGG 5 cut(s) 213, 490, 629, 919, 1152
PspN4I GGNNCC 3 cut(s) 151, 635, 1065
PspPI GGNCC 3 cut(s) 30, 485, 1091
PstI CTGCAG 1 cut(s) 298
PstNI CAGNNNCTG 2 cut(s) 980, 1021
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
RseI CAYNNNNRTG 1 cut(s) 1164
SacI GAGCTC 2 cut(s) 627, 906
SapI GCTCTTC 1 cut(s) 880
SaqAI TTAA 5 cut(s) 45, 357, 372, 402, 426
SatI GCNGC 7 cut(s) 111, 222, 795, 825, 1008, 1016, 1119
Sau3AI GATC 3 cut(s) 247, 261, 346
Sau96I GGNCC 3 cut(s) 30, 485, 1091
ScaI AGTACT 1 cut(s) 440
SchI GAGTC 2 cut(s) 284, 587
ScrFI CCNGG 5 cut(s) 215, 492, 631, 921, 1154
SduI GDGCHC 3 cut(s) 627, 864, 906
SfaNI GCATC 4 cut(s) 49, 572, 661, 811
SfcI CTRYAG 1 cut(s) 294
SfoI GGCGCC 1 cut(s) 151
SinI GGWCC 2 cut(s) 30, 1091
SmiI ATTTAAAT 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 1164
SpeI ACTAGT 1 cut(s) 778
Sse9I AATT 5 cut(s) 41, 47, 666, 675, 852
SsiI CCGC 1 cut(s) 795
SspDI GGCGCC 1 cut(s) 149
SspI AATATT 1 cut(s) 556
SspMI CTAG 3 cut(s) 779, 818, 914
SstI GAGCTC 2 cut(s) 627, 906
StyD4I CCNGG 5 cut(s) 213, 490, 629, 919, 1152
StyI CCWWGG 2 cut(s) 461, 809
SwaI ATTTAAAT 1 cut(s) 46
TaaI ACNGT 1 cut(s) 228
TaiI ACGT 3 cut(s) 307, 397, 691
TaqI TCGA 2 cut(s) 25, 208
TasI AATT 5 cut(s) 41, 47, 666, 675, 852
TatI WGTACW 1 cut(s) 438
TauI GCSGC 1 cut(s) 797
Tru1I TTAA 5 cut(s) 45, 357, 372, 402, 426
Tru9I TTAA 5 cut(s) 45, 357, 372, 402, 426
TscAI CASTG 1 cut(s) 417
TseFI GTSAC 2 cut(s) 19, 590
TseI GCWGC 6 cut(s) 110, 221, 824, 1007, 1015, 1118
Tsp45I GTSAC 2 cut(s) 19, 590
TspDTI ATGAA 5 cut(s) 231, 297, 726, 789, 1089
TspGWI ACGGA 1 cut(s) 749
TspRI CASTG 1 cut(s) 417
VpaK11BI GGWCC 2 cut(s) 30, 1091
XagI CCTNNNNNAGG 1 cut(s) 465
XapI RAATTY 2 cut(s) 41, 852
XcmI CCANNNNNNNNNTGG 1 cut(s) 357
XspI CTAG 3 cut(s) 779, 818, 914
ZrmI AGTACT 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.