Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002713

Physical Location & Seq

Genomic Coordinates Reverse (-)

27604612 .. 27609275

Gene Structure 4664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g26280.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGTCCGACGAGCCTGCTCCCACTCGCTGGTCCTTTCAGGATTTTAAATTGTTTTATGATGCCAAGTTTGGTAGAAAGAGAGCGCCGGAGCCGCAGCAAAACGGGCAATCCACTGATGGAGCTGTGAGTAATGGGAGTAGTTCCGGAGTGACTGCGAATGGGAATGGTCATGTGAAGAGAACAGCTGACTTGGCCATCTATGAGCAATTTCAAAACCAGGGTAGGAGCTCCGCGACTCACTCAAATGGAGTCTTATCTGATCAGCATGATGAGATACCGCAGAAGTCCCTTTTACCTGCTTTTGAATCGGCAGAAATGCGTTCTTTAGGAGAGAGTTTATGCAGGGATATAGTTCGGGGTAGTCCAGATGTTAAGTGGGAAAGCATCAAGGGATTAGAGAATGCCAAGCGTTTGCTCAAAGAAGCTGTGGTCATGCCAATTAAATATCCCAAGTACTTTACTGGACTTGTAACACCGTTGAAAGGTATTCTCCTTTTTGGCCCTCCAGGGACGGGAAAGACAATGCTTGCCAAGGCTGTTGCAACAGAGTGCAAGACCACATTTTTCAACATTTCAGCATCGTCCGTTGTCAGTAAATGGCGTGGCGACTCAGAGAAGTTAGTGAAGGTGTTATTTGAGCTTGCTAGGCACCATGCACCATCAACTATATTTATTGATGAAATTGACGCAATTATTAGTCAACGTGGTGAAGGACGAAGTGAGCATGAAGCAAGTAGGCGTCTAAAGACAGAGCTACTCGTACAGATGGATGGTTTGACGAAGACAAGTGAACTTGTTTTTGTTTTGGCTGCAACAAATCTTCCCTGGGAACTGGATGCAGCCATGCTCCGGCGTCTTGAGAAGCGAATTCTTGTGCCTCTGCCTGAACCAGAAGCAAGAGGAGCCATGTTTGAGGAGCTCCTGCCAGCACAGCCTGATGAGGAGAAACTTCCTTATGATTTGTTGGTAGATAGGACAGAAGGATACTCAGGTTCGGATATTCGATTGGTTTGCAAGGAGGCTGCCATGCAGCCCTTGAGACGCGTAATGACATTCCTTGAAGACAAAGAGGAGACGGTTCCTGAGGATGAACTGCCTAAGGTTGGACCGATCAAACCCGAAGATATTGAGACGGCTTTGAAGAACACAAGGCCGTCTGCTCATCTCCAAGCTCATCGTTACGAGAAGTTCAATGCAGATTACGGTAGTCAAATACTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000922 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0015630 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

408

Amino Acids

45.35

Weight (kDa)

5.88

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34560 AT2G34560
fragaria_vesca	FvH4_3g05520 FvH4_3g05520 FvH4_3g05520 FvH4_3g05520 FvH4_3g05520 FvH4_3g24600
malus_domestica	MD05G1283700.v1.1 MD10G1261900.v1.1 MD11G1161400.v1.1 MD17G1012100.v1.1
prunus_persica	Prupe.4G080800_v2.0.a1 Prupe.4G080800_v2.0.a1 Prupe.6G127100_v2.0.a1
pyrus_communis	pycom05g26280 pycom07g21360 pycom10g21820 pycom11g13380
rosa_chinensis	RchiOBHm_Chr5g0014221 RchiOBHm_Chr5g0044151
rosa_laevigata	RLG00000032091 RLG00000034247
rosa_multiflora	Rmu_sc0000939.1_g000032 Rmu_sc0014980.1_g000003 Rmu_ssc0000120.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036900 Rroxscaffold_1G00062360
rosa_rugosa	Rorug05G0016300 Rorug05G0210900 Rorug05G0211000
rosa_samantha	Rh5AG295800 Rh5BG303600 Rh5CG119300 Rh5CG330600 Rh5DG312400
rosa_wichuraiana	Rw5G009640 Rw5G027350 Rw5G027420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	304
AccB1I	GGYRCC	1 cut(s)	648
AccB7I	CCANNNNNTGG	1 cut(s)	27
AccII	CGCG	2 cut(s)	233, 1044
AccIII	TCCGGA	1 cut(s)	143
AciI	CCGC	3 cut(s)	92, 231, 278
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	867
AcyI	GRCGYC	2 cut(s)	739, 853
AfaI	GTAC	2 cut(s)	455, 762
AfiI	CCNNNNNNNGG	5 cut(s)	27, 482, 512, 849, 1103
AflIII	ACRYGT	1 cut(s)	1042
AgsI	TTSAA	7 cut(s)	212, 305, 481, 568, 1061, 1141, 1192
AjnI	CCWGG	3 cut(s)	216, 505, 824
AluBI	AGCT	8 cut(s)	122, 185, 228, 425, 640, 754, 919, 1172
AluI	AGCT	8 cut(s)	122, 185, 228, 425, 640, 754, 919, 1172
Alw21I	GWGCWC	2 cut(s)	230, 921
Alw26I	GTCTC	3 cut(s)	1033, 1067, 1124
Aor13HI	TCCGGA	1 cut(s)	143
AoxI	GGCC	3 cut(s)	192, 499, 1151
ApeKI	GCWGC	5 cut(s)	94, 809, 839, 1022, 1030
ApoI	RAATTY	1 cut(s)	867
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	3 cut(s)	30, 500, 1106
AsuHPI	GGTGA	1 cut(s)	719
AvaII	GGWCC	2 cut(s)	30, 1106
AxyI	CCTNAGG	2 cut(s)	1083, 1098
BaeI	ACNNNNGTAYC	2 cut(s)	976, 1009
BalI	TGGCCA	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	648
BanII	GRGCYC	2 cut(s)	230, 921
BbsI	GAAGAC	2 cut(s)	788, 1068
Bbv12I	GWGCWC	2 cut(s)	230, 921
BbvI	GCAGC	5 cut(s)	106, 796, 851, 1009, 1042
BccI	CCATC	5 cut(s)	110, 203, 667, 760, 764
BceAI	ACGGC	2 cut(s)	1138, 1149
BcgI	CGANNNNNNTGC	3 cut(s)	30, 993, 1027
BciT130I	CCWGG	3 cut(s)	218, 507, 826
BciVI	GTATCC	1 cut(s)	977
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	3 cut(s)	1033, 1067, 1124
BfaI	CTAG	1 cut(s)	645
BfoI	RGCGCY	1 cut(s)	86
BfuAI	ACCTGC	1 cut(s)	304
BfuI	GTATCC	1 cut(s)	977
BisI	GCNGC	6 cut(s)	92, 95, 810, 840, 1023, 1031
BlsI	GCNGC	6 cut(s)	93, 96, 811, 841, 1024, 1032
BmcAI	AGTACT	1 cut(s)	455
Bme1390I	CCNGG	3 cut(s)	218, 507, 826
Bme18I	GGWCC	2 cut(s)	30, 1106
BmgT120I	GGNCC	3 cut(s)	30, 500, 1106
BmiI	GGNNCC	4 cut(s)	90, 650, 904, 1080
BmrFI	CCNGG	3 cut(s)	218, 507, 826
BmsI	GCATC	4 cut(s)	49, 393, 587, 826
BpiI	GAAGAC	2 cut(s)	788, 1068
BpmI	CTGGAG	1 cut(s)	489
BpuEI	CTTGAG	2 cut(s)	878, 1057
BsaHI	GRCGYC	2 cut(s)	739, 853
BsaJI	CCNNGG	5 cut(s)	217, 506, 531, 824, 825
BsaWI	WCCGGW	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	5 cut(s)	27, 482, 512, 849, 1103
Bse1I	ACTGG	2 cut(s)	466, 837
Bse21I	CCTNAGG	2 cut(s)	1083, 1098
BseAI	TCCGGA	1 cut(s)	143
BseBI	CCWGG	3 cut(s)	218, 507, 826
BseDI	CCNNGG	5 cut(s)	217, 506, 531, 824, 825
BseGI	GGATG	3 cut(s)	775, 841, 1093
BseLI	CCNNNNNNNGG	5 cut(s)	27, 482, 512, 849, 1103
BseMII	CTCAG	3 cut(s)	624, 1002, 1074
BseNI	ACTGG	2 cut(s)	466, 837
BseRI	GAGGAG	4 cut(s)	915, 929, 956, 1085
BseXI	GCAGC	5 cut(s)	106, 796, 851, 1009, 1042
Bsh1236I	CGCG	2 cut(s)	233, 1044
BshFI	GGCC	3 cut(s)	194, 501, 1153
BshNI	GGYRCC	1 cut(s)	648
BsiHKAI	GWGCWC	2 cut(s)	230, 921
BsiSI	CCGG	3 cut(s)	86, 144, 850
BslFI	GGGAC	2 cut(s)	271, 523
BslI	CCNNNNNNNGG	5 cut(s)	27, 482, 512, 849, 1103
BsmAI	GTCTC	3 cut(s)	1033, 1067, 1124
BsmBI	CGTCTC	3 cut(s)	1033, 1067, 1124
BsmFI	GGGAC	2 cut(s)	271, 523
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	3 cut(s)	194, 501, 1153
Bsp1286I	GDGCHC	2 cut(s)	230, 921
Bsp13I	TCCGGA	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	259, 1110
BspACI	CCGC	3 cut(s)	92, 231, 278
BspANI	GGCC	3 cut(s)	194, 501, 1153
BspCNI	CTCAG	3 cut(s)	623, 1001, 1075
BspEI	TCCGGA	1 cut(s)	143
BspFNI	CGCG	2 cut(s)	233, 1044
BspLI	GGNNCC	4 cut(s)	90, 650, 904, 1080
BspMI	ACCTGC	1 cut(s)	304
BspT107I	GGYRCC	1 cut(s)	648
BsrI	ACTGG	2 cut(s)	466, 837
BssECI	CCNNGG	5 cut(s)	217, 506, 531, 824, 825
BssMI	GATC	2 cut(s)	259, 1110
BssNI	GRCGYC	2 cut(s)	739, 853
BssT1I	CCWWGG	1 cut(s)	531
Bst2UI	CCWGG	3 cut(s)	218, 507, 826
Bst4CI	ACNGT	3 cut(s)	477, 1078, 1205
Bst6I	CTCTTC	1 cut(s)	170
BstACI	GRCGYC	2 cut(s)	739, 853
BstC8I	GCNNGC	4 cut(s)	15, 528, 642, 927
BstDEI	CTNAG	4 cut(s)	610, 988, 1083, 1098
BstF5I	GGATG	3 cut(s)	775, 841, 1093
BstFNI	CGCG	2 cut(s)	233, 1044
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	2 cut(s)	262, 1113
BstMAI	GTCTC	3 cut(s)	1033, 1067, 1124
BstMBI	GATC	2 cut(s)	259, 1110
BstMWI	GCNNNNNNNGC	6 cut(s)	91, 103, 191, 646, 902, 931
BstNI	CCWGG	3 cut(s)	218, 507, 826
BstSCI	CCNGG	3 cut(s)	216, 505, 824
BstUI	CGCG	2 cut(s)	233, 1044
BstV1I	GCAGC	5 cut(s)	106, 796, 851, 1009, 1042
BstV2I	GAAGAC	2 cut(s)	788, 1068
Bsu36I	CCTNAGG	2 cut(s)	1083, 1098
BsuI	GTATCC	1 cut(s)	977
BsuRI	GGCC	3 cut(s)	194, 501, 1153
BtsCI	GGATG	3 cut(s)	775, 841, 1093
BtsIMutI	CAGTG	1 cut(s)	111
BveI	ACCTGC	1 cut(s)	304
Cac8I	GCNNGC	4 cut(s)	15, 528, 642, 927
CfoI	GCGC	1 cut(s)	85
Cfr13I	GGNCC	3 cut(s)	30, 500, 1106
CseI	GACGC	4 cut(s)	695, 728, 842, 1050
Csp6I	GTAC	2 cut(s)	454, 761
CviAII	CATG	8 cut(s)	170, 266, 433, 653, 725, 844, 907, 1027
CviQI	GTAC	2 cut(s)	454, 761
DdeI	CTNAG	4 cut(s)	610, 988, 1083, 1098
DpnI	GATC	2 cut(s)	261, 1112
DpnII	GATC	2 cut(s)	259, 1110
DraI	TTTAAA	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Ecl136II	GAGCTC	2 cut(s)	228, 919
Eco130I	CCWWGG	1 cut(s)	531
Eco24I	GRGCYC	2 cut(s)	230, 921
Eco47I	GGWCC	2 cut(s)	30, 1106
Eco53kI	GAGCTC	2 cut(s)	228, 919
Eco81I	CCTNAGG	2 cut(s)	1083, 1098
EcoICRI	GAGCTC	2 cut(s)	228, 919
EcoRI	GAATTC	1 cut(s)	867
EcoRII	CCWGG	3 cut(s)	216, 505, 824
EcoT14I	CCWWGG	1 cut(s)	531
EcoT38I	GRGCYC	2 cut(s)	230, 921
ErhI	CCWWGG	1 cut(s)	531
Esp3I	CGTCTC	3 cut(s)	1033, 1067, 1124
FaeI	CATG	8 cut(s)	173, 269, 436, 656, 728, 847, 910, 1030
FaqI	GGGAC	2 cut(s)	271, 523
FatI	CATG	8 cut(s)	169, 265, 432, 652, 724, 843, 906, 1026
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	6 cut(s)	92, 95, 810, 840, 1023, 1031
FokI	GGATG	3 cut(s)	782, 848, 1100
FriOI	GRGCYC	2 cut(s)	230, 921
Fsp4HI	GCNGC	6 cut(s)	92, 95, 810, 840, 1023, 1031
FspBI	CTAG	1 cut(s)	645
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	6 cut(s)	92, 95, 810, 840, 1023, 1031
GsuI	CTGGAG	1 cut(s)	489
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	3 cut(s)	194, 501, 1153
HapII	CCGG	3 cut(s)	86, 144, 850
HgaI	GACGC	4 cut(s)	695, 728, 842, 1050
HhaI	GCGC	1 cut(s)	85
Hin1I	GRCGYC	2 cut(s)	739, 853
Hin1II	CATG	8 cut(s)	173, 269, 436, 656, 728, 847, 910, 1030
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HincII	GTYRAC	1 cut(s)	701
HindII	GTYRAC	1 cut(s)	701
HinfI	GANTC	4 cut(s)	235, 249, 305, 608
HpaII	CCGG	3 cut(s)	86, 144, 850
HphI	GGTGA	1 cut(s)	719
Hpy166II	GTNNAC	2 cut(s)	701, 791
Hpy188I	TCNGA	4 cut(s)	7, 259, 613, 997
Hpy188III	TCNNGA	5 cut(s)	38, 144, 365, 857, 1082
Hpy8I	GTNNAC	2 cut(s)	701, 791
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	3 cut(s)	619, 704, 974
HpyCH4III	ACNGT	3 cut(s)	477, 1078, 1205
HpyCH4IV	ACGT	1 cut(s)	703
HpyCH4V	TGCA	9 cut(s)	342, 542, 552, 656, 812, 839, 1014, 1030, 1196
HpyF10VI	GCNNNNNNNGC	6 cut(s)	91, 103, 191, 646, 902, 931
HpyF3I	CTNAG	4 cut(s)	610, 988, 1083, 1098
HpySE526I	ACGT	1 cut(s)	703
Hsp92I	GRCGYC	2 cut(s)	739, 853
Hsp92II	CATG	8 cut(s)	173, 269, 436, 656, 728, 847, 910, 1030
HspAI	GCGC	1 cut(s)	83
Kpn2I	TCCGGA	1 cut(s)	143
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	259, 1110
LmnI	GCTCC	9 cut(s)	22, 88, 119, 225, 233, 852, 902, 916, 924
Lsp1109I	GCAGC	5 cut(s)	106, 796, 851, 1009, 1042
LweI	GCATC	4 cut(s)	49, 393, 587, 826
MaeI	CTAG	1 cut(s)	645
MaeII	ACGT	1 cut(s)	703
MaeIII	GTNAC	3 cut(s)	148, 469, 1178
MalI	GATC	2 cut(s)	261, 1112
MboI	GATC	2 cut(s)	259, 1110
MboII	GAAGA	6 cut(s)	187, 793, 812, 1073, 1133, 1153
MhlI	GDGCHC	2 cut(s)	230, 921
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	6 cut(s)	47, 206, 438, 681, 690, 867
MluI	ACGCGT	1 cut(s)	1042
MluNI	TGGCCA	1 cut(s)	194
MlyI	GAGTC	3 cut(s)	229, 258, 602
MmeI	TCCRAC	2 cut(s)	30, 1084
MnlI	CCTC	8 cut(s)	513, 888, 893, 907, 934, 1012, 1063, 1078
Mox20I	TGGCCA	1 cut(s)	194
MroI	TCCGGA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	3 cut(s)	45, 372, 441
MslI	CAYNNNNRTG	1 cut(s)	243
Msp20I	TGGCCA	1 cut(s)	194
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	3 cut(s)	86, 144, 850
MspR9I	CCNGG	3 cut(s)	218, 507, 826
Mva1269I	GAATGC	1 cut(s)	406
MvaI	CCWGG	3 cut(s)	218, 507, 826
MvnI	CGCG	2 cut(s)	233, 1044
MwoI	GCNNNNNNNGC	6 cut(s)	91, 103, 191, 646, 902, 931
NdeII	GATC	2 cut(s)	259, 1110
NlaIII	CATG	8 cut(s)	173, 269, 436, 656, 728, 847, 910, 1030
NlaIV	GGNNCC	4 cut(s)	90, 650, 904, 1080
NmuCI	GTSAC	1 cut(s)	148
PasI	CCCWGGG	1 cut(s)	825
PctI	GAATGC	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	305
PflMI	CCANNNNNTGG	1 cut(s)	27
PkrI	GCNGC	6 cut(s)	93, 96, 811, 841, 1024, 1032
PleI	GAGTC	3 cut(s)	229, 257, 602
PpsI	GAGTC	3 cut(s)	229, 257, 602
Psp124BI	GAGCTC	2 cut(s)	230, 921
Psp6I	CCWGG	3 cut(s)	216, 505, 824
PspGI	CCWGG	3 cut(s)	216, 505, 824
PspN4I	GGNNCC	4 cut(s)	90, 650, 904, 1080
PspPI	GGNCC	3 cut(s)	30, 500, 1106
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	2 cut(s)	455, 762
RsaNI	GTAC	2 cut(s)	454, 761
RseI	CAYNNNNRTG	1 cut(s)	243
SacI	GAGCTC	2 cut(s)	230, 921
SaqAI	TTAA	3 cut(s)	45, 372, 441
SatI	GCNGC	6 cut(s)	92, 95, 810, 840, 1023, 1031
Sau3AI	GATC	2 cut(s)	259, 1110
Sau96I	GGNCC	3 cut(s)	30, 500, 1106
ScaI	AGTACT	1 cut(s)	455
SchI	GAGTC	3 cut(s)	229, 258, 602
ScrFI	CCNGG	3 cut(s)	218, 507, 826
SduI	GDGCHC	2 cut(s)	230, 921
SfaNI	GCATC	4 cut(s)	49, 393, 587, 826
SinI	GGWCC	2 cut(s)	30, 1106
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	2 cut(s)	857, 1036
SmoI	CTYRAG	2 cut(s)	857, 1036
Sse9I	AATT	6 cut(s)	47, 206, 438, 681, 690, 867
SsiI	CCGC	3 cut(s)	92, 231, 278
SspMI	CTAG	1 cut(s)	645
SstI	GAGCTC	2 cut(s)	230, 921
StyD4I	CCNGG	3 cut(s)	216, 505, 824
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	3 cut(s)	477, 1078, 1205
TaiI	ACGT	1 cut(s)	706
TaqI	TCGA	1 cut(s)	1003
TaqII	GACCGA	1 cut(s)	1123
TasI	AATT	6 cut(s)	47, 206, 438, 681, 690, 867
TatI	WGTACW	1 cut(s)	453
TauI	GCSGC	1 cut(s)	94
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	3 cut(s)	45, 372, 441
Tru9I	TTAA	3 cut(s)	45, 372, 441
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	5 cut(s)	94, 809, 839, 1022, 1030
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	3 cut(s)	693, 741, 1104
TspGWI	ACGGA	1 cut(s)	574
TspRI	CASTG	1 cut(s)	118
Van91I	CCANNNNNTGG	1 cut(s)	27
VpaK11BI	GGWCC	2 cut(s)	30, 1106
XapI	RAATTY	1 cut(s)	867
XcmI	CCANNNNNNNNNTGG	1 cut(s)	372
XspI	CTAG	1 cut(s)	645
ZrmI	AGTACT	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.