pycom10g21820

Katanin p60 ATPase-containing subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
24380103 .. 24383807
3705 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g21820.9

Sequence Viewer

Length: 1224 bp
ATGTCCGACGAGCCTGCTCCCAGTCGCTGGTCCTTTCAGGATTTTAAATTGTTTTATGATGCCAAGTTTGGTAGAAAGAAAGCGCCGGAGCCGCAGCAAAACGGGCAGTCCACTAATGGAGCAGTGAGTAATGGAAGTAGTTCCGGAGTGACCGCGAATGGGAATGGTCACGTGAAGAGGACAGCTGACTTGGCCATCTATGAGCAATTTCAAAACCAGGGTAGGGGCTCCGTGCCTCACTCAAATGGAGTCTTATCTGATCAGCATGATGAAATACCGCAGAAGTCCCTTTTACCTGCTTTTGAATCGGCAGAAATGCGTTCTTTAGGAGAGAGTTTATGCAGGGATATAATTCGGGGTAGTCCAGATGTTAAGTGGGAAAGCATCAAGGGATTAGAGAATGCCAAGCGTTTGCTCAAAGAAGCAGTGGTCATGCCAATTAAATATCCCAAGTACTTTACTGGACTTTTAACACCGTGGAAAGGTATTCTCCTTTTTGGCCCTCCAGGGACAGGAAAGACAATGCTTGCCAAGGCTGTTGCAACAGAGTGCAAGACCACATTTTTCAACATTTCAGCATCGTCTGTTGTCAGCAAATGGCGTGGCGACTCAGAGAAGTTAGTGAAGGTGTTGTTTGAGCTTGCTAGGCACCATGCACCATCAACTATATTTATTGATGAAATTGACGCAATTATTAGTCAACGTGGTGAAGGACGAAGTGAGCATGAAGCAAGTAGGCGTCTGAAGACGGAGCTACTCGTACAGATGGATGGTTTGACGAAGACAAGTGAACTTGTTTTTGTTTTGGCTGCCACAAATCTTCCCTGGGAACTGGATGCAGCCATGCTCCGGCGTCTTGAGAAGCGAATTCTTGTGCCTCTGCCTGAACCAGAAGCAAGAAGAGCCATGTTCAAGGAGCTCCTGCCAGTACAGCCTGATGAGGAGAAGCTTCCTTATGATTTGTTGGTGGATAAAACTGAAGGATATTCAGGTTCAGATATTCGATTGGTGTGCAAGGAGGCTGCTATGCAGCCTCTGAGACGTGTAATGACATTCCTTGAAGACAAAGAGGACACAGTTCCTGAGGATGAACTGCCCAAGGTTGGACCGATCAAACACGAAGATATTGAGACGGCTTTGAAGAACACAAGGCCGTCTGCTCATCTCCAAGTTCATCGTTACGAGAAGTTCAATGCTGATTATGGTAGTCAAATACTCCAATGA

Protein Analysis

408

Amino Acids

45.56

Weight (kDa)

6.54

Isoelectric Point (pI)

49.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 304
AccB1I GGYRCC 1 cut(s) 648
AccB7I CCANNNNNTGG 1 cut(s) 27
AccII CGCG 1 cut(s) 155
AccIII TCCGGA 1 cut(s) 143
AciI CCGC 3 cut(s) 92, 153, 278
AcoI YGGCCR 1 cut(s) 192
AcsI RAATTY 1 cut(s) 867
AcuI CTGAAG 2 cut(s) 764, 999
AcvI CACGTG 1 cut(s) 172
AcyI GRCGYC 2 cut(s) 739, 853
AfaI GTAC 3 cut(s) 455, 762, 930
AfiI CCNNNNNNNGG 7 cut(s) 27, 159, 223, 482, 512, 849, 1103
AflIII ACRYGT 1 cut(s) 1042
AgsI TTSAA 7 cut(s) 212, 305, 568, 913, 1061, 1141, 1192
AjiI CACGTC 1 cut(s) 1043
AjnI CCWGG 3 cut(s) 216, 505, 824
AluBI AGCT 5 cut(s) 185, 640, 754, 919, 949
AluI AGCT 5 cut(s) 185, 640, 754, 919, 949
Alw21I GWGCWC 1 cut(s) 921
Alw26I GTCTC 2 cut(s) 1033, 1124
AlwNI CAGNNNCTG 3 cut(s) 27, 1036, 1082
Aor13HI TCCGGA 1 cut(s) 143
AoxI GGCC 3 cut(s) 192, 499, 1151
ApeKI GCWGC 5 cut(s) 94, 809, 839, 1022, 1030
ApoI RAATTY 1 cut(s) 867
Asp700I GAANNNNTTC 1 cut(s) 139
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 3 cut(s) 30, 500, 1106
AsuHPI GGTGA 1 cut(s) 719
AvaII GGWCC 2 cut(s) 30, 1106
AxyI CCTNAGG 1 cut(s) 1083
BalI TGGCCA 1 cut(s) 194
BanI GGYRCC 1 cut(s) 648
BanII GRGCYC 2 cut(s) 230, 921
BbrPI CACGTG 1 cut(s) 172
BbsI GAAGAC 3 cut(s) 752, 788, 1068
Bbv12I GWGCWC 1 cut(s) 921
BbvI GCAGC 5 cut(s) 106, 796, 851, 1009, 1042
BccI CCATC 4 cut(s) 203, 667, 760, 764
BceAI ACGGC 2 cut(s) 1138, 1149
BcgI CGANNNNNNTGC 3 cut(s) 30, 993, 1027
BciT130I CCWGG 3 cut(s) 218, 507, 826
BclI TGATCA 1 cut(s) 259
BcoDI GTCTC 2 cut(s) 1033, 1124
BfaI CTAG 1 cut(s) 645
BfoI RGCGCY 1 cut(s) 86
BfuAI ACCTGC 1 cut(s) 304
BisI GCNGC 6 cut(s) 92, 95, 810, 840, 1023, 1031
BlsI GCNGC 6 cut(s) 93, 96, 811, 841, 1024, 1032
BmcAI AGTACT 1 cut(s) 455
Bme1390I CCNGG 3 cut(s) 218, 507, 826
Bme18I GGWCC 2 cut(s) 30, 1106
BmgBI CACGTC 1 cut(s) 1043
BmgT120I GGNCC 3 cut(s) 30, 500, 1106
BmiI GGNNCC 3 cut(s) 90, 229, 650
BmrFI CCNGG 3 cut(s) 218, 507, 826
BmrI ACTGGG 1 cut(s) 15
BmsI GCATC 4 cut(s) 49, 393, 587, 826
BmuI ACTGGG 1 cut(s) 15
BpiI GAAGAC 3 cut(s) 752, 788, 1068
BpmI CTGGAG 1 cut(s) 489
BpuEI CTTGAG 1 cut(s) 878
BsaAI YACGTR 1 cut(s) 172
BsaHI GRCGYC 2 cut(s) 739, 853
BsaJI CCNNGG 7 cut(s) 217, 476, 506, 531, 824, 825, 1098
BsaWI WCCGGW 1 cut(s) 143
Bsc4I CCNNNNNNNGG 7 cut(s) 27, 159, 223, 482, 512, 849, 1103
Bse1I ACTGG 4 cut(s) 21, 466, 837, 926
Bse21I CCTNAGG 1 cut(s) 1083
BseAI TCCGGA 1 cut(s) 143
BseBI CCWGG 3 cut(s) 218, 507, 826
BseDI CCNNGG 7 cut(s) 217, 476, 506, 531, 824, 825, 1098
BseGI GGATG 3 cut(s) 775, 841, 1093
BseLI CCNNNNNNNGG 7 cut(s) 27, 159, 223, 482, 512, 849, 1103
BseMII CTCAG 3 cut(s) 624, 1028, 1074
BseNI ACTGG 4 cut(s) 21, 466, 837, 926
BseRI GAGGAG 1 cut(s) 956
BseXI GCAGC 5 cut(s) 106, 796, 851, 1009, 1042
Bsh1236I CGCG 1 cut(s) 155
BshFI GGCC 3 cut(s) 194, 501, 1153
BshNI GGYRCC 1 cut(s) 648
BsiHKAI GWGCWC 1 cut(s) 921
BsiSI CCGG 3 cut(s) 86, 144, 850
BslFI GGGAC 2 cut(s) 271, 523
BslI CCNNNNNNNGG 7 cut(s) 27, 159, 223, 482, 512, 849, 1103
BsmAI GTCTC 2 cut(s) 1033, 1124
BsmBI CGTCTC 2 cut(s) 1033, 1124
BsmFI GGGAC 2 cut(s) 271, 523
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 3 cut(s) 194, 501, 1153
Bsp1286I GDGCHC 2 cut(s) 230, 921
Bsp13I TCCGGA 1 cut(s) 143
Bsp143I GATC 2 cut(s) 259, 1110
BspACI CCGC 3 cut(s) 92, 153, 278
BspANI GGCC 3 cut(s) 194, 501, 1153
BspCNI CTCAG 3 cut(s) 623, 1029, 1075
BspEI TCCGGA 1 cut(s) 143
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 3 cut(s) 90, 229, 650
BspMI ACCTGC 1 cut(s) 304
BspQI GCTCTTC 1 cut(s) 895
BspT107I GGYRCC 1 cut(s) 648
BsrI ACTGG 4 cut(s) 21, 466, 837, 926
BssECI CCNNGG 7 cut(s) 217, 476, 506, 531, 824, 825, 1098
BssMI GATC 2 cut(s) 259, 1110
BssNI GRCGYC 2 cut(s) 739, 853
BssT1I CCWWGG 2 cut(s) 531, 1098
Bst2UI CCWGG 3 cut(s) 218, 507, 826
Bst4CI ACNGT 2 cut(s) 477, 1078
Bst6I CTCTTC 2 cut(s) 170, 895
BstACI GRCGYC 2 cut(s) 739, 853
BstBAI YACGTR 1 cut(s) 172
BstC8I GCNNGC 3 cut(s) 15, 528, 642
BstDEI CTNAG 3 cut(s) 610, 1037, 1083
BstDSI CCRYGG 1 cut(s) 476
BstF5I GGATG 3 cut(s) 775, 841, 1093
BstFNI CGCG 1 cut(s) 155
BstH2I RGCGCY 1 cut(s) 86
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 2 cut(s) 262, 1113
BstMAI GTCTC 2 cut(s) 1033, 1124
BstMBI GATC 2 cut(s) 259, 1110
BstMWI GCNNNNNNNGC 6 cut(s) 91, 103, 191, 646, 902, 931
BstNI CCWGG 3 cut(s) 218, 507, 826
BstSCI CCNGG 3 cut(s) 216, 505, 824
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 5 cut(s) 106, 796, 851, 1009, 1042
BstV2I GAAGAC 3 cut(s) 752, 788, 1068
Bsu36I CCTNAGG 1 cut(s) 1083
BsuRI GGCC 3 cut(s) 194, 501, 1153
BtgI CCRYGG 1 cut(s) 476
BtrI CACGTC 1 cut(s) 1043
BtsCI GGATG 3 cut(s) 775, 841, 1093
BtsI GCAGTG 2 cut(s) 129, 432
BtsIMutI CAGTG 2 cut(s) 129, 432
BveI ACCTGC 1 cut(s) 304
Cac8I GCNNGC 3 cut(s) 15, 528, 642
CaiI CAGNNNCTG 3 cut(s) 27, 1036, 1082
CfoI GCGC 1 cut(s) 85
Cfr13I GGNCC 3 cut(s) 30, 500, 1106
CseI GACGC 3 cut(s) 695, 728, 842
Csp6I GTAC 3 cut(s) 454, 761, 929
CspCI CAANNNNNGTGG 2 cut(s) 583, 618
CviAII CATG 6 cut(s) 266, 433, 653, 725, 844, 907
CviQI GTAC 3 cut(s) 454, 761, 929
DdeI CTNAG 3 cut(s) 610, 1037, 1083
DpnI GATC 2 cut(s) 261, 1112
DpnII GATC 2 cut(s) 259, 1110
DraI TTTAAA 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 2 cut(s) 170, 895
EarI CTCTTC 2 cut(s) 170, 895
Ecl136II GAGCTC 1 cut(s) 919
Eco130I CCWWGG 2 cut(s) 531, 1098
Eco24I GRGCYC 2 cut(s) 230, 921
Eco47I GGWCC 2 cut(s) 30, 1106
Eco53kI GAGCTC 1 cut(s) 919
Eco57I CTGAAG 2 cut(s) 764, 999
Eco72I CACGTG 1 cut(s) 172
Eco81I CCTNAGG 1 cut(s) 1083
EcoICRI GAGCTC 1 cut(s) 919
EcoRI GAATTC 1 cut(s) 867
EcoRII CCWGG 3 cut(s) 216, 505, 824
EcoT14I CCWWGG 2 cut(s) 531, 1098
EcoT38I GRGCYC 2 cut(s) 230, 921
ErhI CCWWGG 2 cut(s) 531, 1098
Esp3I CGTCTC 2 cut(s) 1033, 1124
FaeI CATG 6 cut(s) 269, 436, 656, 728, 847, 910
FaqI GGGAC 2 cut(s) 271, 523
FatI CATG 6 cut(s) 265, 432, 652, 724, 843, 906
FbaI TGATCA 1 cut(s) 259
Fnu4HI GCNGC 6 cut(s) 92, 95, 810, 840, 1023, 1031
FokI GGATG 3 cut(s) 782, 848, 1100
FriOI GRGCYC 2 cut(s) 230, 921
Fsp4HI GCNGC 6 cut(s) 92, 95, 810, 840, 1023, 1031
FspBI CTAG 1 cut(s) 645
GlaI GCGC 1 cut(s) 84
GluI GCNGC 6 cut(s) 92, 95, 810, 840, 1023, 1031
GsuI CTGGAG 1 cut(s) 489
HaeII RGCGCY 1 cut(s) 86
HaeIII GGCC 3 cut(s) 194, 501, 1153
HapII CCGG 3 cut(s) 86, 144, 850
HgaI GACGC 3 cut(s) 695, 728, 842
HhaI GCGC 1 cut(s) 85
Hin1I GRCGYC 2 cut(s) 739, 853
Hin1II CATG 6 cut(s) 269, 436, 656, 728, 847, 910
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HincII GTYRAC 1 cut(s) 701
HindII GTYRAC 1 cut(s) 701
HindIII AAGCTT 1 cut(s) 947
HinfI GANTC 3 cut(s) 249, 305, 608
HpaII CCGG 3 cut(s) 86, 144, 850
HphI GGTGA 1 cut(s) 719
Hpy166II GTNNAC 3 cut(s) 111, 701, 791
Hpy188I TCNGA 6 cut(s) 7, 259, 613, 744, 997, 1038
Hpy188III TCNNGA 5 cut(s) 38, 144, 365, 857, 1082
Hpy8I GTNNAC 3 cut(s) 111, 701, 791
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 3 cut(s) 619, 704, 974
HpyCH4III ACNGT 2 cut(s) 477, 1078
HpyCH4IV ACGT 3 cut(s) 171, 703, 1042
HpyCH4V TGCA 7 cut(s) 342, 542, 552, 656, 839, 1014, 1030
HpyF10VI GCNNNNNNNGC 6 cut(s) 91, 103, 191, 646, 902, 931
HpyF3I CTNAG 3 cut(s) 610, 1037, 1083
HpySE526I ACGT 3 cut(s) 171, 703, 1042
Hsp92I GRCGYC 2 cut(s) 739, 853
Hsp92II CATG 6 cut(s) 269, 436, 656, 728, 847, 910
HspAI GCGC 1 cut(s) 83
Kpn2I TCCGGA 1 cut(s) 143
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 2 cut(s) 259, 1110
LguI GCTCTTC 1 cut(s) 895
LmnI GCTCC 8 cut(s) 22, 88, 119, 233, 751, 852, 916, 924
Lsp1109I GCAGC 5 cut(s) 106, 796, 851, 1009, 1042
LweI GCATC 4 cut(s) 49, 393, 587, 826
MaeI CTAG 1 cut(s) 645
MaeII ACGT 3 cut(s) 171, 703, 1042
MaeIII GTNAC 3 cut(s) 148, 167, 1178
MalI GATC 2 cut(s) 261, 1112
MboI GATC 2 cut(s) 259, 1110
MboII GAAGA 8 cut(s) 187, 757, 793, 812, 912, 1073, 1133, 1153
MhlI GDGCHC 2 cut(s) 230, 921
MlsI TGGCCA 1 cut(s) 194
MluCI AATT 7 cut(s) 47, 206, 351, 438, 681, 690, 867
MluNI TGGCCA 1 cut(s) 194
MlyI GAGTC 2 cut(s) 258, 602
MmeI TCCRAC 2 cut(s) 30, 1084
MnlI CCTC 9 cut(s) 171, 246, 513, 888, 934, 1012, 1044, 1063, 1078
Mox20I TGGCCA 1 cut(s) 194
MroI TCCGGA 1 cut(s) 143
MroXI GAANNNNTTC 1 cut(s) 139
MscI TGGCCA 1 cut(s) 194
MseI TTAA 4 cut(s) 45, 372, 441, 470
MslI CAYNNNNRTG 1 cut(s) 243
Msp20I TGGCCA 1 cut(s) 194
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 3 cut(s) 86, 144, 850
MspR9I CCNGG 3 cut(s) 218, 507, 826
Mva1269I GAATGC 1 cut(s) 406
MvaI CCWGG 3 cut(s) 218, 507, 826
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 6 cut(s) 91, 103, 191, 646, 902, 931
NdeII GATC 2 cut(s) 259, 1110
NlaIII CATG 6 cut(s) 269, 436, 656, 728, 847, 910
NlaIV GGNNCC 3 cut(s) 90, 229, 650
NmuCI GTSAC 2 cut(s) 148, 167
PasI CCCWGGG 1 cut(s) 825
PciSI GCTCTTC 1 cut(s) 895
PctI GAATGC 1 cut(s) 406
PdmI GAANNNNTTC 1 cut(s) 139
PfeI GAWTC 1 cut(s) 305
PflMI CCANNNNNTGG 1 cut(s) 27
PkrI GCNGC 6 cut(s) 93, 96, 811, 841, 1024, 1032
PleI GAGTC 2 cut(s) 257, 602
PmaCI CACGTG 1 cut(s) 172
PmlI CACGTG 1 cut(s) 172
PpsI GAGTC 2 cut(s) 257, 602
Ppu21I YACGTR 1 cut(s) 172
Psp124BI GAGCTC 1 cut(s) 921
Psp6I CCWGG 3 cut(s) 216, 505, 824
PspCI CACGTG 1 cut(s) 172
PspGI CCWGG 3 cut(s) 216, 505, 824
PspN4I GGNNCC 3 cut(s) 90, 229, 650
PspPI GGNCC 3 cut(s) 30, 500, 1106
PstNI CAGNNNCTG 3 cut(s) 27, 1036, 1082
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 3 cut(s) 455, 762, 930
RsaNI GTAC 3 cut(s) 454, 761, 929
RseI CAYNNNNRTG 1 cut(s) 243
SacI GAGCTC 1 cut(s) 921
SapI GCTCTTC 1 cut(s) 895
SaqAI TTAA 4 cut(s) 45, 372, 441, 470
SatI GCNGC 6 cut(s) 92, 95, 810, 840, 1023, 1031
Sau3AI GATC 2 cut(s) 259, 1110
Sau96I GGNCC 3 cut(s) 30, 500, 1106
ScaI AGTACT 1 cut(s) 455
SchI GAGTC 2 cut(s) 258, 602
ScrFI CCNGG 3 cut(s) 218, 507, 826
SduI GDGCHC 2 cut(s) 230, 921
SfaNI GCATC 4 cut(s) 49, 393, 587, 826
SinI GGWCC 2 cut(s) 30, 1106
SmiMI CAYNNNNRTG 1 cut(s) 243
SmlI CTYRAG 1 cut(s) 857
SmoI CTYRAG 1 cut(s) 857
Sse9I AATT 7 cut(s) 47, 206, 351, 438, 681, 690, 867
SsiI CCGC 3 cut(s) 92, 153, 278
SspMI CTAG 1 cut(s) 645
SstI GAGCTC 1 cut(s) 921
StyD4I CCNGG 3 cut(s) 216, 505, 824
StyI CCWWGG 2 cut(s) 531, 1098
TaaI ACNGT 2 cut(s) 477, 1078
TaiI ACGT 3 cut(s) 174, 706, 1045
TaqI TCGA 1 cut(s) 1003
TaqII GACCGA 1 cut(s) 1123
TasI AATT 7 cut(s) 47, 206, 351, 438, 681, 690, 867
TatI WGTACW 2 cut(s) 453, 928
TauI GCSGC 1 cut(s) 94
TfiI GAWTC 1 cut(s) 305
Tru1I TTAA 4 cut(s) 45, 372, 441, 470
Tru9I TTAA 4 cut(s) 45, 372, 441, 470
TscAI CASTG 2 cut(s) 129, 432
TseFI GTSAC 2 cut(s) 148, 167
TseI GCWGC 5 cut(s) 94, 809, 839, 1022, 1030
Tsp45I GTSAC 2 cut(s) 148, 167
TspDTI ATGAA 5 cut(s) 285, 693, 741, 1104, 1163
TspGWI ACGGA 2 cut(s) 220, 764
TspRI CASTG 2 cut(s) 129, 432
Van91I CCANNNNNTGG 1 cut(s) 27
VpaK11BI GGWCC 2 cut(s) 30, 1106
XapI RAATTY 1 cut(s) 867
XcmI CCANNNNNNNNNTGG 1 cut(s) 372
XmnI GAANNNNTTC 1 cut(s) 139
XspI CTAG 1 cut(s) 645
ZrmI AGTACT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.