Rh5CG119300

Katanin p60 ATPase-containing subunit

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
9888897 .. 9893898
5002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG119300.1

Sequence Viewer

Length: 1188 bp
ATGTCCGATGAGCCTTCAATCACTCGATGGACCTTTCCGTTTGGTAGAAAGAAAGTGTCGGAGGAAACGCAAAGTGAGCAGGCAGCCACTAATGGAGCTGTGAGTAATGGGGGAGCTTCGGGCGCTACAGCGAATGGGAATGGTCATGTGAAAAACCAATCTGACTTGGCCATCTATGAGCGATATCGAAACCAGGAAGCTGCACAGTCGAGTGGAGTTTCATCTGATCCAAATCATGTGATCCCGAAATCTTTGCTTCCTGCTTTTGACTCTGCAGAAACACGTTCATTAGCAGAGAGTTTATGCAGGGATATAGTTCGTGGTGATCCGGATGTTAAGTGGGAAACCATTAAGGGGTTAGAGAATGCTAAACGTTTACTTAAAGAAGCAGTGGTCATGCCGATTAAGTATCCCAAGTACTTTACTGGTCTCTTATCGCCTTGGAAAGGTATTCTCCTTTTTGGCCCTCCAGGGACAGGAAAGACTATGCTTGCGAAGGCTGTTGCAACAGAGTGCAAGACCACATTTTTCAACATTTCAGCATCATCAGTTGTCAGTAAATGGCGTGGTGACTCAGAGAAGTTAGTGAAGGTGTTATTTGAGCTCGCCAGGCACCATGCACCCTCAACTATATTTATTGACGAAATTGATGCAATTATTAGTCAACGTGGTGAAGCACGAAGTGAGCATGAAGCAAGTAGGCGTTTGAAAACGGAGCTTCTGATACAGATGGATGGTTTGATGAAGACAAATGAACTAGTGTTTGTTTTGGCCGCAACAAATCTTCCTTGGGAACTAGATGCAGCCATGCTCCGGCGTCTTGAAAAACGAATTCTTGTGCCTCTGCCTGAACCTGAAGCACGAAGAGCCATGTTTGAGGAGCTCCTGCCAGTAGAGCCTGGTGAGGAGGAGCTTCCTTATGATTTGTTGGTGGATAAGACAGATGGATATTCAGGTTCTGATATTAGGCTGGTGTGCAAGGAGGCTGCCATGCAGCCCCTGAGACGCCTAATGACACTCCTTGAAGACAAAGAGGAAGTGGTGCCTGAGGATGAACTGCCTAAGGTTGGACCAATCAAACACGATGACATTGAGACAGCTTTGAAGAACACAAGGCCATCTGCTCATCTCCAGGCTCATCGTTATGAGAAGTTCAATGCTGATTACGGCAGTCAAATACTCCAATGA

Protein Analysis

395

Amino Acids

43.99

Weight (kDa)

5.67

Isoelectric Point (pI)

50.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 151 - 282 1e-40 ATPase family associated with various cellular activities (AAA)
RuvB_N PF05496 151 - 221 3.2e-06 Holliday junction DNA helicase RuvB P-loop domain
AAA_lid_3 PF17862 307 - 344 8.1e-12 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 612, 1042
AccIII TCCGGA 1 cut(s) 328
AciI CCGC 1 cut(s) 774
AclI AACGTT 1 cut(s) 373
AclWI GGATC 3 cut(s) 221, 235, 320
AcoI YGGCCR 2 cut(s) 168, 771
AcsI RAATTY 1 cut(s) 831
AcuI CTGAAG 1 cut(s) 876
AcyI GRCGYC 2 cut(s) 817, 1006
AdeI CACNNNGTG 1 cut(s) 683
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 5 cut(s) 354, 446, 476, 813, 1067
AflIII ACRYGT 1 cut(s) 281
AgsI TTSAA 7 cut(s) 18, 532, 709, 824, 1025, 1105, 1156
AhlI ACTAGT 1 cut(s) 757
AjnI CCWGG 5 cut(s) 192, 469, 608, 898, 1131
AluBI AGCT 8 cut(s) 98, 116, 200, 604, 718, 883, 913, 1100
AluI AGCT 8 cut(s) 98, 116, 200, 604, 718, 883, 913, 1100
Alw21I GWGCWC 2 cut(s) 606, 885
Alw26I GTCTC 3 cut(s) 434, 997, 1088
AlwI GGATC 3 cut(s) 221, 235, 320
AlwNI CAGNNNCTG 2 cut(s) 959, 1000
Aor13HI TCCGGA 1 cut(s) 328
AoxI GGCC 4 cut(s) 168, 463, 771, 1115
ApeKI GCWGC 5 cut(s) 83, 200, 803, 986, 994
ApoI RAATTY 1 cut(s) 831
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 3 cut(s) 30, 464, 1070
AsuHPI GGTGA 4 cut(s) 335, 581, 683, 914
AvaII GGWCC 2 cut(s) 30, 1070
AxyI CCTNAGG 2 cut(s) 1047, 1062
BalI TGGCCA 1 cut(s) 170
BanI GGYRCC 2 cut(s) 612, 1042
BanII GRGCYC 2 cut(s) 606, 885
BbsI GAAGAC 2 cut(s) 752, 1032
Bbv12I GWGCWC 2 cut(s) 606, 885
BbvI GCAGC 5 cut(s) 95, 187, 815, 973, 1006
BccI CCATC 6 cut(s) 21, 179, 724, 728, 938, 1126
BceAI ACGGC 1 cut(s) 1183
BcgI CGANNNNNNTGC 4 cut(s) 235, 269, 632, 666
BciT130I CCWGG 5 cut(s) 194, 471, 610, 900, 1133
BciVI GTATCC 1 cut(s) 420
BcoDI GTCTC 3 cut(s) 434, 997, 1088
BcuI ACTAGT 1 cut(s) 757
BfaI CTAG 2 cut(s) 758, 797
BfmI CTRYAG 2 cut(s) 126, 273
BfoI RGCGCY 1 cut(s) 126
BfuI GTATCC 1 cut(s) 420
BisI GCNGC 6 cut(s) 84, 201, 774, 804, 987, 995
BlsI GCNGC 6 cut(s) 85, 202, 775, 805, 988, 996
BmcAI AGTACT 1 cut(s) 419
Bme1390I CCNGG 5 cut(s) 194, 471, 610, 900, 1133
Bme18I GGWCC 2 cut(s) 30, 1070
BmgT120I GGNCC 3 cut(s) 30, 464, 1070
BmiI GGNNCC 2 cut(s) 614, 1044
BmrFI CCNGG 5 cut(s) 194, 471, 610, 900, 1133
BmsI GCATC 3 cut(s) 551, 640, 790
BpiI GAAGAC 2 cut(s) 752, 1032
BpmI CTGGAG 2 cut(s) 453, 1115
BsaBI GATNNNNATC 1 cut(s) 231
BsaHI GRCGYC 2 cut(s) 817, 1006
BsaI GGTCTC 1 cut(s) 434
BsaJI CCNNGG 3 cut(s) 440, 470, 788
BsaWI WCCGGW 1 cut(s) 328
Bsc4I CCNNNNNNNGG 5 cut(s) 354, 446, 476, 813, 1067
Bse1I ACTGG 2 cut(s) 430, 890
Bse21I CCTNAGG 2 cut(s) 1047, 1062
Bse8I GATNNNNATC 1 cut(s) 231
BseAI TCCGGA 1 cut(s) 328
BseBI CCWGG 5 cut(s) 194, 471, 610, 900, 1133
BseDI CCNNGG 3 cut(s) 440, 470, 788
BseGI GGATG 3 cut(s) 337, 739, 1057
BseJI GATNNNNATC 1 cut(s) 231
BseLI CCNNNNNNNGG 5 cut(s) 354, 446, 476, 813, 1067
BseMII CTCAG 3 cut(s) 588, 992, 1038
BseNI ACTGG 2 cut(s) 430, 890
BseRI GAGGAG 3 cut(s) 893, 920, 923
BseXI GCAGC 5 cut(s) 95, 187, 815, 973, 1006
BsgI GTGCAG 1 cut(s) 186
BshFI GGCC 4 cut(s) 170, 465, 773, 1117
BshNI GGYRCC 2 cut(s) 612, 1042
BsiHKAI GWGCWC 2 cut(s) 606, 885
BsiSI CCGG 2 cut(s) 329, 814
BslFI GGGAC 1 cut(s) 487
BslI CCNNNNNNNGG 5 cut(s) 354, 446, 476, 813, 1067
BsmAI GTCTC 3 cut(s) 434, 997, 1088
BsmBI CGTCTC 1 cut(s) 997
BsmFI GGGAC 1 cut(s) 487
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 4 cut(s) 170, 465, 773, 1117
Bso31I GGTCTC 1 cut(s) 434
Bsp1286I GDGCHC 2 cut(s) 606, 885
Bsp13I TCCGGA 1 cut(s) 328
Bsp143I GATC 3 cut(s) 226, 240, 325
BspACI CCGC 1 cut(s) 774
BspANI GGCC 4 cut(s) 170, 465, 773, 1117
BspCNI CTCAG 3 cut(s) 587, 993, 1039
BspEI TCCGGA 1 cut(s) 328
BspLI GGNNCC 2 cut(s) 614, 1044
BspMAI CTGCAG 1 cut(s) 277
BspPI GGATC 3 cut(s) 221, 235, 320
BspQI GCTCTTC 1 cut(s) 859
BspT107I GGYRCC 2 cut(s) 612, 1042
BspTNI GGTCTC 1 cut(s) 434
BsrI ACTGG 2 cut(s) 430, 890
BssECI CCNNGG 3 cut(s) 440, 470, 788
BssMI GATC 3 cut(s) 226, 240, 325
BssNI GRCGYC 2 cut(s) 817, 1006
BssT1I CCWWGG 2 cut(s) 440, 788
Bst2UI CCWGG 5 cut(s) 194, 471, 610, 900, 1133
Bst4CI ACNGT 1 cut(s) 207
Bst6I CTCTTC 1 cut(s) 859
BstACI GRCGYC 2 cut(s) 817, 1006
BstC8I GCNNGC 3 cut(s) 81, 492, 606
BstDEI CTNAG 4 cut(s) 574, 1001, 1047, 1062
BstENI CCTNNNNNAGG 1 cut(s) 444
BstF5I GGATG 3 cut(s) 337, 739, 1057
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 3 cut(s) 229, 243, 328
BstMAI GTCTC 3 cut(s) 434, 997, 1088
BstMBI GATC 3 cut(s) 226, 240, 325
BstMWI GCNNNNNNNGC 5 cut(s) 76, 122, 610, 866, 895
BstNI CCWGG 5 cut(s) 194, 471, 610, 900, 1133
BstSCI CCNGG 5 cut(s) 192, 469, 608, 898, 1131
BstSFI CTRYAG 2 cut(s) 126, 273
BstV1I GCAGC 5 cut(s) 95, 187, 815, 973, 1006
BstV2I GAAGAC 2 cut(s) 752, 1032
Bsu36I CCTNAGG 2 cut(s) 1047, 1062
BsuI GTATCC 1 cut(s) 420
BsuRI GGCC 4 cut(s) 170, 465, 773, 1117
BtsCI GGATG 3 cut(s) 337, 739, 1057
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 1 cut(s) 396
Cac8I GCNNGC 3 cut(s) 81, 492, 606
CaiI CAGNNNCTG 2 cut(s) 959, 1000
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 3 cut(s) 30, 464, 1070
CseI GACGC 2 cut(s) 806, 1014
Csp6I GTAC 1 cut(s) 418
CviAII CATG 8 cut(s) 146, 236, 397, 617, 689, 808, 871, 991
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 4 cut(s) 574, 1001, 1047, 1062
DpnI GATC 3 cut(s) 228, 242, 327
DpnII GATC 3 cut(s) 226, 240, 325
DraIII CACNNNGTG 1 cut(s) 683
EaeI YGGCCR 2 cut(s) 168, 771
Eam1104I CTCTTC 1 cut(s) 859
EarI CTCTTC 1 cut(s) 859
Ecl136II GAGCTC 2 cut(s) 604, 883
Eco130I CCWWGG 2 cut(s) 440, 788
Eco24I GRGCYC 2 cut(s) 606, 885
Eco31I GGTCTC 1 cut(s) 434
Eco32I GATATC 1 cut(s) 185
Eco47I GGWCC 2 cut(s) 30, 1070
Eco53kI GAGCTC 2 cut(s) 604, 883
Eco57I CTGAAG 1 cut(s) 876
Eco81I CCTNAGG 2 cut(s) 1047, 1062
EcoICRI GAGCTC 2 cut(s) 604, 883
EcoNI CCTNNNNNAGG 1 cut(s) 444
EcoRI GAATTC 1 cut(s) 831
EcoRII CCWGG 5 cut(s) 192, 469, 608, 898, 1131
EcoRV GATATC 1 cut(s) 185
EcoT14I CCWWGG 2 cut(s) 440, 788
EcoT38I GRGCYC 2 cut(s) 606, 885
ErhI CCWWGG 2 cut(s) 440, 788
Esp3I CGTCTC 1 cut(s) 997
FaeI CATG 8 cut(s) 149, 239, 400, 620, 692, 811, 874, 994
FaqI GGGAC 1 cut(s) 487
FatI CATG 8 cut(s) 145, 235, 396, 616, 688, 807, 870, 990
Fnu4HI GCNGC 6 cut(s) 84, 201, 774, 804, 987, 995
FokI GGATG 3 cut(s) 344, 746, 1064
FriOI GRGCYC 2 cut(s) 606, 885
Fsp4HI GCNGC 6 cut(s) 84, 201, 774, 804, 987, 995
FspBI CTAG 2 cut(s) 758, 797
GlaI GCGC 1 cut(s) 124
GluI GCNGC 6 cut(s) 84, 201, 774, 804, 987, 995
GsuI CTGGAG 2 cut(s) 453, 1115
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 4 cut(s) 170, 465, 773, 1117
HapII CCGG 2 cut(s) 329, 814
HgaI GACGC 2 cut(s) 806, 1014
HhaI GCGC 1 cut(s) 125
Hin1I GRCGYC 2 cut(s) 817, 1006
Hin1II CATG 8 cut(s) 149, 239, 400, 620, 692, 811, 874, 994
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HincII GTYRAC 1 cut(s) 665
HindII GTYRAC 1 cut(s) 665
HinfI GANTC 2 cut(s) 269, 572
HpaII CCGG 2 cut(s) 329, 814
HphI GGTGA 4 cut(s) 335, 581, 683, 914
Hpy166II GTNNAC 2 cut(s) 377, 665
Hpy188I TCNGA 7 cut(s) 7, 61, 163, 226, 577, 723, 961
Hpy188III TCNNGA 3 cut(s) 244, 329, 821
Hpy8I GTNNAC 2 cut(s) 377, 665
HpyAV CCTTC 3 cut(s) 24, 490, 583
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4IV ACGT 3 cut(s) 283, 373, 667
HpyF10VI GCNNNNNNNGC 5 cut(s) 76, 122, 610, 866, 895
HpyF3I CTNAG 4 cut(s) 574, 1001, 1047, 1062
HpySE526I ACGT 3 cut(s) 283, 373, 667
Hsp92I GRCGYC 2 cut(s) 817, 1006
Hsp92II CATG 8 cut(s) 149, 239, 400, 620, 692, 811, 874, 994
HspAI GCGC 1 cut(s) 123
Kpn2I TCCGGA 1 cut(s) 328
Kzo9I GATC 3 cut(s) 226, 240, 325
LguI GCTCTTC 1 cut(s) 859
LmnI GCTCC 7 cut(s) 95, 113, 715, 816, 880, 888, 910
Lsp1109I GCAGC 5 cut(s) 95, 187, 815, 973, 1006
LweI GCATC 3 cut(s) 551, 640, 790
MaeI CTAG 2 cut(s) 758, 797
MaeII ACGT 3 cut(s) 283, 373, 667
MaeIII GTNAC 1 cut(s) 569
MalI GATC 3 cut(s) 228, 242, 327
MboI GATC 3 cut(s) 226, 240, 325
MboII GAAGA 5 cut(s) 757, 776, 876, 1037, 1117
MhlI GDGCHC 2 cut(s) 606, 885
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 3 cut(s) 645, 654, 831
MluNI TGGCCA 1 cut(s) 170
MlyI GAGTC 2 cut(s) 263, 566
MmeI TCCRAC 2 cut(s) 39, 1048
Mox20I TGGCCA 1 cut(s) 170
MroI TCCGGA 1 cut(s) 328
MscI TGGCCA 1 cut(s) 170
MseI TTAA 4 cut(s) 336, 351, 381, 405
MslI CAYNNNNRTG 1 cut(s) 1143
Msp20I TGGCCA 1 cut(s) 170
MspI CCGG 2 cut(s) 329, 814
MspR9I CCNGG 5 cut(s) 194, 471, 610, 900, 1133
Mva1269I GAATGC 1 cut(s) 370
MvaI CCWGG 5 cut(s) 194, 471, 610, 900, 1133
MwoI GCNNNNNNNGC 5 cut(s) 76, 122, 610, 866, 895
NdeII GATC 3 cut(s) 226, 240, 325
NlaIII CATG 8 cut(s) 149, 239, 400, 620, 692, 811, 874, 994
NlaIV GGNNCC 2 cut(s) 614, 1044
NmuCI GTSAC 1 cut(s) 569
PciSI GCTCTTC 1 cut(s) 859
PctI GAATGC 1 cut(s) 370
PkrI GCNGC 6 cut(s) 85, 202, 775, 805, 988, 996
PleI GAGTC 2 cut(s) 263, 566
PpsI GAGTC 2 cut(s) 263, 566
Psp124BI GAGCTC 2 cut(s) 606, 885
Psp1406I AACGTT 1 cut(s) 373
Psp6I CCWGG 5 cut(s) 192, 469, 608, 898, 1131
PspGI CCWGG 5 cut(s) 192, 469, 608, 898, 1131
PspN4I GGNNCC 2 cut(s) 614, 1044
PspPI GGNCC 3 cut(s) 30, 464, 1070
PstI CTGCAG 1 cut(s) 277
PstNI CAGNNNCTG 2 cut(s) 959, 1000
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
RseI CAYNNNNRTG 1 cut(s) 1143
SacI GAGCTC 2 cut(s) 606, 885
SapI GCTCTTC 1 cut(s) 859
SaqAI TTAA 4 cut(s) 336, 351, 381, 405
SatI GCNGC 6 cut(s) 84, 201, 774, 804, 987, 995
Sau3AI GATC 3 cut(s) 226, 240, 325
Sau96I GGNCC 3 cut(s) 30, 464, 1070
ScaI AGTACT 1 cut(s) 419
SchI GAGTC 2 cut(s) 263, 566
ScrFI CCNGG 5 cut(s) 194, 471, 610, 900, 1133
SduI GDGCHC 2 cut(s) 606, 885
SfaNI GCATC 3 cut(s) 551, 640, 790
SfcI CTRYAG 2 cut(s) 126, 273
SinI GGWCC 2 cut(s) 30, 1070
SmiMI CAYNNNNRTG 1 cut(s) 1143
SpeI ACTAGT 1 cut(s) 757
Sse9I AATT 3 cut(s) 645, 654, 831
SsiI CCGC 1 cut(s) 774
SspMI CTAG 2 cut(s) 758, 797
SstI GAGCTC 2 cut(s) 606, 885
StyD4I CCNGG 5 cut(s) 192, 469, 608, 898, 1131
StyI CCWWGG 2 cut(s) 440, 788
TaaI ACNGT 1 cut(s) 207
TaiI ACGT 3 cut(s) 286, 376, 670
TaqI TCGA 3 cut(s) 25, 187, 209
TasI AATT 3 cut(s) 645, 654, 831
TatI WGTACW 1 cut(s) 417
TauI GCSGC 1 cut(s) 776
Tru1I TTAA 4 cut(s) 336, 351, 381, 405
Tru9I TTAA 4 cut(s) 336, 351, 381, 405
TscAI CASTG 1 cut(s) 396
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 5 cut(s) 83, 200, 803, 986, 994
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 6 cut(s) 210, 276, 705, 758, 768, 1068
TspGWI ACGGA 2 cut(s) 27, 728
TspRI CASTG 1 cut(s) 396
VpaK11BI GGWCC 2 cut(s) 30, 1070
XagI CCTNNNNNAGG 1 cut(s) 444
XapI RAATTY 1 cut(s) 831
XspI CTAG 2 cut(s) 758, 797
ZrmI AGTACT 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.