Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002713

Physical Location & Seq

Genomic Coordinates Reverse (-)

37106177 .. 37111040

Gene Structure 4864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG330600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGCATGATTTAAATTCAAATTCCATTTTCCTTTTCATTTTGCAGCACTATATTGTTTACATGGGGCACCACTCGCACCCCAACTCGGAATCTGTCATCAGAGCTAACCATGAGATTCTTGCTTCAGTCACCGGCAGTACCGGTGGACAAGAAGCAGCACTTAACCATTACAGTAAAAGTTTCCAAGGCTTCTCAGCCAAGCTTACACCAGATCAAGCTCAACAACTTGCTGAACATGATTCGGTTATTTCGGTGTTTGAGAGCAAGACAAACAAACTGAGCACAACACATTCCTGGGATTTTCTAGGCGTAGATGCTACTCCTAATTACAATCAAATGCCAATGGGTTCCAAATCCAATGTCATTGTTGGTGGTTCCTCTTTAAACCCACTGAAGATGGATAAGTCTTACAGTTTGATTGCTGCAAGTGTTGCAGCTGCCCCTGGAGTCACAGCAAAGAATGCAAGCTTCTGCAAGGACAATACTCTAAATGCAAGCTTAATTAAGGGAAAAATCGTTGTGTGCACCTTTGAGACATTTACCGACAACCGAAGGGAAAAAAGTATAGTTGTAAGACAAGGTGGTGGTGTAGGAATGATTCTTGTGGATCCATTTCTCAAAGATGTTGGCTTTGAGTTTGTCATCCCGGCCACCCTAATTGGTCAAGAAGAAGCAGCACAGCTTCAAGCATACATGACAACAGAGAAGTACCCAGTTGCTAGAATCTCACAAACGACAACAATTCTGAAAACTAAACCTGCACCTGAGATGGCAGTGTTCTCCTCCATGGGGCCAAATATCATAACCCCAGACATTATCAAACTTTGTATTCAAATATTTCTTTCATATGTTGTTGCAGCAACAGCTCTAGACAACAACAAACGCCCTATTGGGAGAGATCCAAATGGTGCCCCTACCACACCTTTTGACTATGGATCTGGACACATTAACCCAGTTGCAGCAATTGATCCTGGACTTGTATATGATTTTGATTCCCATGACATAATCGACTTTCTCTGCAGCACTGGGGCTAGCACTCTACAACTGAAAAACCTCACGGGTAATCTAGTTTATTGCCAGAAGCCTTCTATACCTTCCTACAATTTTAACTACCCTTCCATTGGCGTGTCAAAAATGAGTGGAAGGCTATCTGTTCAGCGTACAGTTACTTATTACGGCAAAGGCCCAACTGTATATGCTGCATATGTAGACTACCCAGCAGGTGTAAATGTTACAGTAACACCAGCTAAACTCAAGTTTACAAATACCGGGGAAAAGATGTCTTTCTGTGTTGATTTCACCCCCCTCAAGAATAGTAATGGAAGCTTTGTGTTTGGAGCTCTGACATGGAGTAATGGTATTCAGAATGTTAGGAGTCCTATTGGTCTTAATGTGCTTTCAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

468

Amino Acids

50.56

Weight (kDa)

8.08

Isoelectric Point (pI)

33.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	17 - 93	6.4e-16	Peptidase inhibitor I9
PA	PF02225	152 - 228	8.6e-08	PA domain
fn3_6	PF17766	368 - 461	2.2e-27	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34560 AT2G34560
fragaria_vesca	FvH4_3g05520 FvH4_3g05520 FvH4_3g05520 FvH4_3g05520 FvH4_3g05520 FvH4_3g24600
malus_domestica	MD05G1283700.v1.1 MD10G1261900.v1.1 MD11G1161400.v1.1 MD17G1012100.v1.1
prunus_persica	Prupe.4G080800_v2.0.a1 Prupe.4G080800_v2.0.a1 Prupe.6G127100_v2.0.a1
pyrus_communis	pycom05g26280 pycom07g21360 pycom10g21820 pycom11g13380
rosa_chinensis	RchiOBHm_Chr5g0014221 RchiOBHm_Chr5g0044151
rosa_laevigata	RLG00000032091 RLG00000034247
rosa_multiflora	Rmu_sc0000939.1_g000032 Rmu_sc0014980.1_g000003 Rmu_ssc0000120.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036900 Rroxscaffold_1G00062360
rosa_rugosa	Rorug05G0016300 Rorug05G0210900 Rorug05G0211000
rosa_samantha	Rh5AG295800 Rh5BG303600 Rh5CG119300 Rh5CG330600 Rh5DG312400
rosa_wichuraiana	Rw5G009640 Rw5G027350 Rw5G027420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1211
Acc36I	ACCTGC	2 cut(s)	766, 1211
AccB1I	GGYRCC	2 cut(s)	66, 908
AccI	GTMKAC	1 cut(s)	1209
AclWI	GGATC	5 cut(s)	602, 615, 893, 943, 962
AcoI	YGGCCR	1 cut(s)	648
AcsI	RAATTY	2 cut(s)	13, 19
AcuI	CTGAAG	2 cut(s)	108, 413
AfaI	GTAC	3 cut(s)	139, 710, 1162
AfiI	CCNNNNNNNGG	3 cut(s)	85, 789, 1121
AgeI	ACCGGT	1 cut(s)	140
AgsI	TTSAA	4 cut(s)	18, 686, 833, 1401
AjnI	CCWGG	3 cut(s)	293, 442, 970
Alw21I	GWGCWC	3 cut(s)	284, 527, 1342
Alw26I	GTCTC	1 cut(s)	527
Alw44I	GTGCAC	1 cut(s)	523
AlwI	GGATC	5 cut(s)	602, 615, 893, 943, 962
AoxI	GGCC	3 cut(s)	648, 791, 1183
ApaLI	GTGCAC	1 cut(s)	523
ApoI	RAATTY	2 cut(s)	13, 19
ArsI	GACNNNNNNTTYG	2 cut(s)	345, 377
AsiGI	ACCGGT	1 cut(s)	140
AspS9I	GGNCC	2 cut(s)	791, 1184
AsuC2I	CCSGG	2 cut(s)	647, 1270
AsuHPI	GGTGA	2 cut(s)	121, 1291
AsuNHI	GCTAGC	1 cut(s)	1031
BaeGI	GKGCMC	3 cut(s)	69, 527, 913
BamHI	GGATCC	1 cut(s)	607
BanI	GGYRCC	2 cut(s)	66, 908
BanII	GRGCYC	1 cut(s)	1342
Bbv12I	GWGCWC	3 cut(s)	284, 527, 1342
BccI	CCATC	2 cut(s)	391, 763
BceAI	ACGGC	1 cut(s)	1192
BciT130I	CCWGG	3 cut(s)	295, 444, 972
BcnI	CCSGG	2 cut(s)	647, 1270
BcoDI	GTCTC	1 cut(s)	527
BfaI	CTAG	5 cut(s)	305, 720, 869, 1032, 1067
BfmI	CTRYAG	1 cut(s)	1018
BfuAI	ACCTGC	2 cut(s)	766, 1211
Bme1390I	CCNGG	5 cut(s)	295, 444, 647, 972, 1270
BmgT120I	GGNCC	2 cut(s)	791, 1184
BmiI	GGNNCC	6 cut(s)	68, 349, 376, 609, 792, 910
BmrFI	CCNGG	5 cut(s)	295, 444, 647, 972, 1270
BmrI	ACTGGG	3 cut(s)	707, 947, 1035
BmsI	GCATC	1 cut(s)	304
BmtI	GCTAGC	1 cut(s)	1035
BmuI	ACTGGG	3 cut(s)	707, 947, 1035
BpmI	CTGGAG	1 cut(s)	465
BpuEI	CTTGAG	2 cut(s)	1238, 1292
BpuMI	CCSGG	2 cut(s)	647, 1270
BsaJI	CCNNGG	5 cut(s)	184, 294, 442, 786, 1269
BsaWI	WCCGGW	1 cut(s)	140
BsaXI	ACNNNNNCTCC	2 cut(s)	1342, 1372
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 789, 1121
Bse118I	RCCGGY	2 cut(s)	131, 140
Bse1I	ACTGG	3 cut(s)	713, 953, 1030
BseBI	CCWGG	3 cut(s)	295, 444, 972
BseDI	CCNNGG	5 cut(s)	184, 294, 442, 786, 1269
BseGI	GGATG	1 cut(s)	642
BseLI	CCNNNNNNNGG	3 cut(s)	85, 789, 1121
BseMII	CTCAG	3 cut(s)	207, 269, 756
BseNI	ACTGG	3 cut(s)	713, 953, 1030
BseRI	GAGGAG	1 cut(s)	772
BseSI	GKGCMC	3 cut(s)	69, 527, 913
BseYI	CCCAGC	1 cut(s)	1216
BsgI	GTGCAG	1 cut(s)	744
BshFI	GGCC	3 cut(s)	650, 793, 1185
BshNI	GGYRCC	2 cut(s)	66, 908
BshTI	ACCGGT	1 cut(s)	140
BsiHKAI	GWGCWC	3 cut(s)	284, 527, 1342
BsiSI	CCGG	4 cut(s)	132, 141, 647, 1269
BslI	CCNNNNNNNGG	3 cut(s)	85, 789, 1121
BsmAI	GTCTC	1 cut(s)	527
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	3 cut(s)	650, 793, 1185
Bsp1286I	GDGCHC	5 cut(s)	69, 284, 527, 913, 1342
Bsp143I	GATC	5 cut(s)	211, 607, 898, 935, 967
Bsp19I	CCATGG	1 cut(s)	786
BspANI	GGCC	3 cut(s)	650, 793, 1185
BspCNI	CTCAG	3 cut(s)	206, 270, 757
BspLI	GGNNCC	6 cut(s)	68, 349, 376, 609, 792, 910
BspMAI	CTGCAG	1 cut(s)	1022
BspMI	ACCTGC	2 cut(s)	766, 1211
BspOI	GCTAGC	1 cut(s)	1035
BspPI	GGATC	5 cut(s)	602, 615, 893, 943, 962
BspT107I	GGYRCC	2 cut(s)	66, 908
BsrFI	RCCGGY	2 cut(s)	131, 140
BsrI	ACTGG	3 cut(s)	713, 953, 1030
BssAI	RCCGGY	2 cut(s)	131, 140
BssECI	CCNNGG	5 cut(s)	184, 294, 442, 786, 1269
BssMI	GATC	5 cut(s)	211, 607, 898, 935, 967
BssT1I	CCWWGG	2 cut(s)	184, 786
Bst2UI	CCWGG	3 cut(s)	295, 444, 972
Bst4CI	ACNGT	5 cut(s)	173, 413, 1165, 1192, 1237
BstAPI	GCANNNNNTGC	2 cut(s)	431, 461
BstC8I	GCNNGC	3 cut(s)	466, 496, 1033
BstDEI	CTNAG	3 cut(s)	193, 278, 765
BstDSI	CCRYGG	1 cut(s)	786
BstF5I	GGATG	1 cut(s)	642
BstKTI	GATC	5 cut(s)	214, 610, 901, 938, 970
BstMAI	GTCTC	1 cut(s)	527
BstMBI	GATC	5 cut(s)	211, 607, 898, 935, 967
BstMWI	GCNNNNNNNGC	4 cut(s)	73, 431, 461, 863
BstNI	CCWGG	3 cut(s)	295, 444, 972
BstSCI	CCNGG	5 cut(s)	293, 442, 645, 970, 1268
BstSFI	CTRYAG	1 cut(s)	1018
BstSLI	GKGCMC	3 cut(s)	69, 527, 913
BstX2I	RGATCY	3 cut(s)	607, 898, 935
BstYI	RGATCY	3 cut(s)	607, 898, 935
BsuRI	GGCC	3 cut(s)	650, 793, 1185
BtgI	CCRYGG	1 cut(s)	786
BtsCI	GGATG	1 cut(s)	642
BtsI	GCAGTG	1 cut(s)	780
BtsIMutI	CAGTG	3 cut(s)	389, 780, 1023
BveI	ACCTGC	2 cut(s)	766, 1211
Cac8I	GCNNGC	3 cut(s)	466, 496, 1033
Cfr10I	RCCGGY	2 cut(s)	131, 140
Cfr13I	GGNCC	2 cut(s)	791, 1184
Csp6I	GTAC	3 cut(s)	138, 709, 1161
CspAI	ACCGGT	1 cut(s)	140
CspCI	CAANNNNNGTGG	4 cut(s)	640, 675, 907, 942
CviAII	CATG	8 cut(s)	5, 61, 110, 236, 694, 787, 998, 1347
CviQI	GTAC	3 cut(s)	138, 709, 1161
DdeI	CTNAG	3 cut(s)	193, 278, 765
DpnI	GATC	5 cut(s)	213, 609, 900, 937, 969
DpnII	GATC	5 cut(s)	211, 607, 898, 935, 967
DraI	TTTAAA	2 cut(s)	12, 384
EaeI	YGGCCR	1 cut(s)	648
Ecl136II	GAGCTC	1 cut(s)	1340
Eco130I	CCWWGG	2 cut(s)	184, 786
Eco24I	GRGCYC	1 cut(s)	1342
Eco53kI	GAGCTC	1 cut(s)	1340
Eco57I	CTGAAG	2 cut(s)	108, 413
EcoICRI	GAGCTC	1 cut(s)	1340
EcoRII	CCWGG	3 cut(s)	293, 442, 970
EcoT14I	CCWWGG	2 cut(s)	184, 786
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	1342
ErhI	CCWWGG	2 cut(s)	184, 786
FaeI	CATG	8 cut(s)	8, 64, 113, 239, 697, 790, 1001, 1350
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FatI	CATG	8 cut(s)	4, 60, 109, 235, 693, 786, 997, 1346
FauNDI	CATATG	2 cut(s)	847, 1204
FblI	GTMKAC	1 cut(s)	1209
FokI	GGATG	1 cut(s)	629
FriOI	GRGCYC	1 cut(s)	1342
FspBI	CTAG	5 cut(s)	305, 720, 869, 1032, 1067
GsaI	CCCAGC	1 cut(s)	1220
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	3 cut(s)	650, 793, 1185
HapII	CCGG	4 cut(s)	132, 141, 647, 1269
Hin1II	CATG	8 cut(s)	8, 64, 113, 239, 697, 790, 1001, 1350
HindIII	AAGCTT	4 cut(s)	200, 466, 496, 1324
HinfI	GANTC	8 cut(s)	89, 115, 239, 447, 598, 723, 992, 1375
HpaII	CCGG	4 cut(s)	132, 141, 647, 1269
HphI	GGTGA	2 cut(s)	121, 1291
Hpy166II	GTNNAC	5 cut(s)	58, 146, 525, 1210, 1260
Hpy188I	TCNGA	5 cut(s)	88, 101, 747, 1344, 1365
Hpy188III	TCNNGA	4 cut(s)	665, 869, 939, 1309
Hpy8I	GTNNAC	5 cut(s)	58, 146, 525, 1210, 1260
HpyAV	CCTTC	5 cut(s)	546, 1095, 1104, 1125, 1137
HpyCH4III	ACNGT	5 cut(s)	173, 413, 1165, 1192, 1237
HpyF10VI	GCNNNNNNNGC	4 cut(s)	73, 431, 461, 863
HpyF3I	CTNAG	3 cut(s)	193, 278, 765
Hsp92II	CATG	8 cut(s)	8, 64, 113, 239, 697, 790, 1001, 1350
Kzo9I	GATC	5 cut(s)	211, 607, 898, 935, 967
LmnI	GCTCC	1 cut(s)	1337
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	5 cut(s)	305, 720, 869, 1032, 1067
MaeIII	GTNAC	5 cut(s)	127, 448, 1165, 1231, 1237
MalI	GATC	5 cut(s)	213, 609, 900, 937, 969
MboI	GATC	5 cut(s)	211, 607, 898, 935, 967
MboII	GAAGA	2 cut(s)	406, 680
MfeI	CAATTG	1 cut(s)	963
MflI	RGATCY	3 cut(s)	607, 898, 935
MhlI	GDGCHC	5 cut(s)	69, 284, 527, 913, 1342
MluCI	AATT	8 cut(s)	13, 19, 325, 501, 657, 741, 963, 1102
MlyI	GAGTC	2 cut(s)	456, 1384
MnlI	CCTC	4 cut(s)	388, 793, 1064, 1316
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	8 cut(s)	11, 162, 383, 500, 504, 948, 1107, 1389
MslI	CAYNNNNRTG	1 cut(s)	1124
MspA1I	CMGCKG	1 cut(s)	437
MspI	CCGG	4 cut(s)	132, 141, 647, 1269
MspR9I	CCNGG	5 cut(s)	295, 444, 647, 972, 1270
MunI	CAATTG	1 cut(s)	963
Mva1269I	GAATGC	1 cut(s)	466
MvaI	CCWGG	3 cut(s)	295, 444, 972
MwoI	GCNNNNNNNGC	4 cut(s)	73, 431, 461, 863
NciI	CCSGG	2 cut(s)	647, 1270
NcoI	CCATGG	1 cut(s)	786
NdeI	CATATG	2 cut(s)	847, 1204
NdeII	GATC	5 cut(s)	211, 607, 898, 935, 967
NheI	GCTAGC	1 cut(s)	1031
NlaIII	CATG	8 cut(s)	8, 64, 113, 239, 697, 790, 1001, 1350
NlaIV	GGNNCC	6 cut(s)	68, 349, 376, 609, 792, 910
NmuCI	GTSAC	2 cut(s)	127, 448
NsiI	ATGCAT	1 cut(s)	6
PacI	TTAATTAA	1 cut(s)	504
PaqCI	CACCTGC	1 cut(s)	1211
PctI	GAATGC	1 cut(s)	466
PfeI	GAWTC	6 cut(s)	89, 115, 239, 598, 723, 992
PfoI	TCCNGGA	1 cut(s)	970
PinAI	ACCGGT	1 cut(s)	140
PleI	GAGTC	2 cut(s)	455, 1383
PpsI	GAGTC	2 cut(s)	455, 1383
Psp124BI	GAGCTC	1 cut(s)	1342
Psp6I	CCWGG	3 cut(s)	293, 442, 970
PspFI	CCCAGC	1 cut(s)	1216
PspGI	CCWGG	3 cut(s)	293, 442, 970
PspN4I	GGNNCC	6 cut(s)	68, 349, 376, 609, 792, 910
PspPI	GGNCC	2 cut(s)	791, 1184
PstI	CTGCAG	1 cut(s)	1022
PsuI	RGATCY	3 cut(s)	607, 898, 935
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	3 cut(s)	139, 710, 1162
RsaNI	GTAC	3 cut(s)	138, 709, 1161
RseI	CAYNNNNRTG	1 cut(s)	1124
SacI	GAGCTC	1 cut(s)	1342
SaqAI	TTAA	8 cut(s)	11, 162, 383, 500, 504, 948, 1107, 1389
Sau3AI	GATC	5 cut(s)	211, 607, 898, 935, 967
Sau96I	GGNCC	2 cut(s)	791, 1184
SchI	GAGTC	2 cut(s)	456, 1384
ScrFI	CCNGG	5 cut(s)	295, 444, 647, 972, 1270
SduI	GDGCHC	5 cut(s)	69, 284, 527, 913, 1342
SfaNI	GCATC	1 cut(s)	304
SfcI	CTRYAG	1 cut(s)	1018
SmiI	ATTTAAAT	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	1124
SmlI	CTYRAG	2 cut(s)	1253, 1307
SmoI	CTYRAG	2 cut(s)	1253, 1307
Sse9I	AATT	8 cut(s)	13, 19, 325, 501, 657, 741, 963, 1102
SspI	AATATT	1 cut(s)	837
SspMI	CTAG	5 cut(s)	305, 720, 869, 1032, 1067
SstI	GAGCTC	1 cut(s)	1342
StyD4I	CCNGG	5 cut(s)	293, 442, 645, 970, 1268
StyI	CCWWGG	2 cut(s)	184, 786
SwaI	ATTTAAAT	1 cut(s)	12
TaaI	ACNGT	5 cut(s)	173, 413, 1165, 1192, 1237
TaqI	TCGA	1 cut(s)	1008
TasI	AATT	8 cut(s)	13, 19, 325, 501, 657, 741, 963, 1102
TfiI	GAWTC	6 cut(s)	89, 115, 239, 598, 723, 992
Tru1I	TTAA	8 cut(s)	11, 162, 383, 500, 504, 948, 1107, 1389
Tru9I	TTAA	8 cut(s)	11, 162, 383, 500, 504, 948, 1107, 1389
TscAI	CASTG	3 cut(s)	396, 780, 1030
TseFI	GTSAC	2 cut(s)	127, 448
Tsp45I	GTSAC	2 cut(s)	127, 448
TspDTI	ATGAA	2 cut(s)	25, 834
TspRI	CASTG	3 cut(s)	396, 780, 1030
VneI	GTGCAC	1 cut(s)	523
XapI	RAATTY	2 cut(s)	13, 19
XbaI	TCTAGA	1 cut(s)	868
XmiI	GTMKAC	1 cut(s)	1209
XspI	CTAG	5 cut(s)	305, 720, 869, 1032, 1067
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.