AT2G46050

repeat-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
18939262 .. 18941034
1773 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G46050.1

Sequence Viewer

Length: 1773 bp
ATGCGTTTTACATTCCTCCGATCAACTCGGATCTTCCTTGCGAACCATCAGAACCACTTATCATCCTTGCAAAACATTAGAACCATTCCTTCTTCTTCTTCTTCACCTGTAGCTATATCCTCTGTATCGAAGTTATCTGCTAGCTTGGATCATCTCTCTGACGTGAAACAAGAACATGGTTTCATGGTAAAACAAGGGATTTACAATTCTCTGTTTCTTCAAAACAAGCTCTTGCAAGCTTACACGAAAATCAGAGAATTCGATGATGCAGATAAGCTCTTCGACGAAATGCCTTTGAGAAATATTGTTACTTGGAACATACTGATTCACGGGGTCATTCAACGAGACGGTGACACCAACCACAGAGCTCATCTAGGTTTTTGTTATTTGAGTCGGATTCTTTTCACTGATGTGAGTTTGGATCATGTGTCGTTCATGGGGTTGATACGGTTGTGTACTGATTCGACCAATATGAAAGCTGGTATCCAATTACACTGTCTGATGGTGAAACAAGGTCTTGAATCGAGTTGCTTTCCGAGTACTAGTCTAGTTCATTTCTATGGGAAATGTGGTCTCATTGTAGAAGCAAGACGAGTTTTTGAGGCGGTTTTGGATAGAGATTTAGTGCTATGGAACGCTTTAGTTTCGTCGTATGTTCTTAACGGTATGATTGATGAAGCTTTTGGTTTACTCAAGCTGATGGGTTCTGACAAAAACAGATTCAGGGGTGATTATTTTACTTTCTCGAGTCTTCTCAGTGCATGCAGGATCGAACAAGGGAAGCAGATTCACGCCATTCTCTTCAAAGTGTCATATCAATTCGACATTCCGGTGGCGACTGCATTGCTGAATATGTATGCTAAGAGTAACCATTTGAGTGATGCTCGGGAGTGTTTTGAATCGATGGTTGTGAGAAATGTAGTGTCTTGGAATGCGATGATTGTAGGTTTTGCACAAAATGGAGAAGGAAGAGAAGCTATGAGACTTTTTGGTCAAATGCTCCTTGAGAATCTTCAACCAGATGAGCTTACCTTTGCAAGTGTTCTAAGTTCCTGCGCCAAATTTTCTGCAATTTGGGAGATTAAGCAAGTGCAAGCGATGGTTACTAAAAAGGGCTCAGCAGATTTTTTGTCGGTCGCTAATTCTCTGATAAGTTCCTACTCCAGGAATGGAAATTTATCTGAAGCACTTTTATGTTTTCATTCGATCCGAGAACCTGATCTTGTTTCATGGACTTCAGTGATAGGAGCTTTGGCTTCTCATGGATTCGCAGAAGAAAGCTTGCAAATGTTTGAAAGTATGCTGCAGAAACTTCAACCAGACAAGATCACTTTTTTAGAGGTTCTGTCTGCTTGTAGCCATGGAGGATTAGTTCAAGAAGGGCTCCGTTGCTTCAAACGAATGACTGAGTTTTACAAGATAGAAGCAGAGGATGAACACTACACGTGTCTGATCGATCTTCTTGGTCGAGCAGGTTTCATCGACGAGGCTTCTGATGTTTTAAATTCAATGCCCACAGAACCAAGCACACATGCTTTGGCAGCTTTCACAGGAGGATGTAACATCCATGAGAAAAGAGAATCCATGAAATGGGGTGCAAAGAAGCTTCTTGAAATTGAACCTACCAAACCTGTGAACTACTCCATCCTGTCAAACGCTTATGTCTCTGAAGGCCATTGGAATCAAGCGGCTCTACTGCGTAAAAGAGAGAGGAGAAACTGCTACAATCCCAAAACTCCAGGTTGCAGTTGGCTAGGGGACTACTCAATCTAG

Protein Analysis

590

Amino Acids

66.33

Weight (kDa)

6.83

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 305 - 354 6.3e-12 PPR repeat family
PPR PF01535 308 - 336 7.5e-07 PPR repeat
E_motif PF20431 525 - 585 5.5e-10 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 990
Acc36I ACCTGC 1 cut(s) 1463
AccB7I CCANNNNNTGG 1 cut(s) 1590
AciI CCGC 2 cut(s) 605, 1688
AclWI GGATC 5 cut(s) 38, 156, 429, 776, 1201
AcsI RAATTY 4 cut(s) 257, 1061, 1174, 1504
AcuI CTGAAG 3 cut(s) 1203, 1221, 1689
AcvI CACGTG 1 cut(s) 1446
AfaI GTAC 2 cut(s) 457, 541
AfiI CCNNNNNNNGG 2 cut(s) 1164, 1590
AflIII ACRYGT 2 cut(s) 1443, 1445
AhlI ACTAGT 1 cut(s) 542
AjiI CACGTC 1 cut(s) 163
AjnI CCWGG 2 cut(s) 1163, 1738
AleI CACNNNNGTG 1 cut(s) 410
AloI GAACNNNNNNTCC 2 cut(s) 1356, 1388
Alw21I GWGCWC 1 cut(s) 370
Alw26I GTCTC 4 cut(s) 339, 578, 976, 1669
AlwI GGATC 5 cut(s) 38, 156, 429, 776, 1201
Ama87I CYCGRG 2 cut(s) 745, 885
AoxI GGCC 1 cut(s) 1672
ApeKI GCWGC 2 cut(s) 1303, 1541
ApoI RAATTY 4 cut(s) 257, 1061, 1174, 1504
AspLEI GCGC 1 cut(s) 1058
AsuHPI GGTGA 4 cut(s) 96, 362, 517, 740
AsuNHI GCTAGC 1 cut(s) 140
AvaI CYCGRG 2 cut(s) 745, 885
BaeI ACNNNNGTAYC 2 cut(s) 437, 470
BanII GRGCYC 3 cut(s) 370, 1118, 1386
BbrPI CACGTG 1 cut(s) 1446
BbsI GAAGAC 1 cut(s) 743
Bbv12I GWGCWC 1 cut(s) 370
BbvI GCAGC 2 cut(s) 1290, 1553
BccI CCATC 6 cut(s) 54, 496, 694, 898, 1093, 1652
BcgI CGANNNNNNTGC 2 cut(s) 826, 860
BciT130I CCWGG 2 cut(s) 1165, 1740
BciVI GTATCC 1 cut(s) 494
BcoDI GTCTC 4 cut(s) 339, 578, 976, 1669
BcuI ACTAGT 1 cut(s) 542
BfaI CTAG 6 cut(s) 141, 374, 543, 548, 1754, 1771
BfmI CTRYAG 2 cut(s) 108, 1304
BfuAI ACCTGC 1 cut(s) 1463
BfuI GTATCC 1 cut(s) 494
BisI GCNGC 3 cut(s) 1304, 1542, 1689
BlpI GCTNAGC 1 cut(s) 1117
BlsI GCNGC 3 cut(s) 1305, 1543, 1690
BmcAI AGTACT 1 cut(s) 541
Bme1390I CCNGG 2 cut(s) 1165, 1740
BmeT110I CYCGRG 2 cut(s) 745, 885
BmgBI CACGTC 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 1385
BmrFI CCNGG 2 cut(s) 1165, 1740
BmsI GCATC 2 cut(s) 256, 871
BmtI GCTAGC 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 743
BplI GAGNNNNNCTC 2 cut(s) 868, 900
BpmI CTGGAG 2 cut(s) 1147, 1722
Bpu1102I GCTNAGC 1 cut(s) 1117
BpuEI CTTGAG 2 cut(s) 677, 1025
Bsa29I ATCGAT 2 cut(s) 902, 1455
BsaAI YACGTR 1 cut(s) 1446
BsaI GGTCTC 1 cut(s) 578
BsaJI CCNNGG 1 cut(s) 1360
BsaWI WCCGGW 1 cut(s) 829
BsaXI ACNNNNNCTCC 2 cut(s) 1356, 1386
Bsc4I CCNNNNNNNGG 2 cut(s) 1164, 1590
Bse3DI GCAATG 1 cut(s) 842
BseBI CCWGG 2 cut(s) 1165, 1740
BseCI ATCGAT 2 cut(s) 902, 1455
BseDI CCNNGG 1 cut(s) 1360
BseGI GGATG 5 cut(s) 62, 1438, 1562, 1563, 1644
BseLI CCNNNNNNNGG 2 cut(s) 1164, 1590
BseMI GCAATG 1 cut(s) 842
BseMII CTCAG 3 cut(s) 769, 1131, 1398
BseRI GAGGAG 1 cut(s) 1726
BseXI GCAGC 2 cut(s) 1290, 1553
Bsh1285I CGRYCG 1 cut(s) 1137
BshFI GGCC 1 cut(s) 1674
BshVI ATCGAT 2 cut(s) 902, 1455
BsiEI CGRYCG 1 cut(s) 1137
BsiHKAI GWGCWC 1 cut(s) 370
BsiHKCI CYCGRG 2 cut(s) 745, 885
BsiSI CCGG 1 cut(s) 830
BslI CCNNNNNNNGG 2 cut(s) 1164, 1590
BsmAI GTCTC 4 cut(s) 339, 578, 976, 1669
BsmBI CGTCTC 1 cut(s) 339
BsmI GAATGC 1 cut(s) 937
BsnI GGCC 1 cut(s) 1674
Bso31I GGTCTC 1 cut(s) 578
BsoBI CYCGRG 2 cut(s) 745, 885
Bsp1286I GDGCHC 3 cut(s) 370, 1118, 1386
Bsp1720I GCTNAGC 1 cut(s) 1117
Bsp19I CCATGG 1 cut(s) 1360
BspACI CCGC 2 cut(s) 605, 1688
BspANI GGCC 1 cut(s) 1674
BspCNI CTCAG 3 cut(s) 768, 1130, 1399
BspDI ATCGAT 2 cut(s) 902, 1455
BspLI GGNNCC 1 cut(s) 1385
BspMAI CTGCAG 1 cut(s) 1308
BspMI ACCTGC 1 cut(s) 1463
BspOI GCTAGC 1 cut(s) 144
BspPI GGATC 5 cut(s) 38, 156, 429, 776, 1201
BspQI GCTCTTC 1 cut(s) 284
BspTNI GGTCTC 1 cut(s) 578
BsrDI GCAATG 1 cut(s) 842
BssECI CCNNGG 1 cut(s) 1360
BssT1I CCWWGG 1 cut(s) 1360
Bst2UI CCWGG 2 cut(s) 1165, 1740
Bst4CI ACNGT 4 cut(s) 350, 450, 497, 665
Bst6I CTCTTC 3 cut(s) 284, 806, 964
BstBAI YACGTR 1 cut(s) 1446
BstC8I GCNNGC 5 cut(s) 142, 237, 763, 1095, 1283
BstDEI CTNAG 5 cut(s) 755, 861, 1046, 1117, 1407
BstDSI CCRYGG 1 cut(s) 1360
BstENI CCTNNNNNAGG 1 cut(s) 1162
BstF5I GGATG 5 cut(s) 62, 1438, 1562, 1563, 1644
BstHHI GCGC 1 cut(s) 1058
BstMAI GTCTC 4 cut(s) 339, 578, 976, 1669
BstMCI CGRYCG 1 cut(s) 1137
BstMWI GCNNNNNNNGC 1 cut(s) 1541
BstNI CCWGG 2 cut(s) 1165, 1740
BstNSI RCATGY 2 cut(s) 765, 1535
BstSCI CCNGG 2 cut(s) 1163, 1738
BstSFI CTRYAG 2 cut(s) 108, 1304
BstV1I GCAGC 2 cut(s) 1290, 1553
BstV2I GAAGAC 1 cut(s) 743
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
Bsu15I ATCGAT 2 cut(s) 902, 1455
BsuI GTATCC 1 cut(s) 494
BsuRI GGCC 1 cut(s) 1674
BsuTUI ATCGAT 2 cut(s) 902, 1455
BtgI CCRYGG 1 cut(s) 1360
BtgZI GCGATG 2 cut(s) 950, 1112
BtrI CACGTC 1 cut(s) 163
BtsCI GGATG 5 cut(s) 62, 1438, 1562, 1563, 1644
BtsIMutI CAGTG 4 cut(s) 405, 493, 763, 1245
BveI ACCTGC 1 cut(s) 1463
Cac8I GCNNGC 5 cut(s) 142, 237, 763, 1095, 1283
CfoI GCGC 1 cut(s) 1058
ClaI ATCGAT 2 cut(s) 902, 1455
Csp6I GTAC 2 cut(s) 456, 540
CviQI GTAC 2 cut(s) 456, 540
DdeI CTNAG 5 cut(s) 755, 861, 1046, 1117, 1407
DraI TTTAAA 1 cut(s) 1503
DrdI GACNNNNNNGTC 1 cut(s) 990
DseDI GACNNNNNNGTC 1 cut(s) 990
Eam1104I CTCTTC 3 cut(s) 284, 806, 964
EarI CTCTTC 3 cut(s) 284, 806, 964
Ecl136II GAGCTC 1 cut(s) 368
Eco130I CCWWGG 1 cut(s) 1360
Eco24I GRGCYC 3 cut(s) 370, 1118, 1386
Eco31I GGTCTC 1 cut(s) 578
Eco53kI GAGCTC 1 cut(s) 368
Eco57I CTGAAG 3 cut(s) 1203, 1221, 1689
Eco72I CACGTG 1 cut(s) 1446
Eco88I CYCGRG 2 cut(s) 745, 885
EcoICRI GAGCTC 1 cut(s) 368
EcoNI CCTNNNNNAGG 1 cut(s) 1162
EcoRI GAATTC 1 cut(s) 257
EcoRII CCWGG 2 cut(s) 1163, 1738
EcoT14I CCWWGG 1 cut(s) 1360
EcoT38I GRGCYC 3 cut(s) 370, 1118, 1386
ErhI CCWWGG 1 cut(s) 1360
Esp3I CGTCTC 1 cut(s) 339
Fnu4HI GCNGC 3 cut(s) 1304, 1542, 1689
FokI GGATG 5 cut(s) 49, 1445, 1550, 1569, 1631
FriOI GRGCYC 3 cut(s) 370, 1118, 1386
Fsp4HI GCNGC 3 cut(s) 1304, 1542, 1689
FspBI CTAG 6 cut(s) 141, 374, 543, 548, 1754, 1771
GlaI GCGC 1 cut(s) 1057
GluI GCNGC 3 cut(s) 1304, 1542, 1689
GsuI CTGGAG 2 cut(s) 1147, 1722
HaeIII GGCC 1 cut(s) 1674
HapII CCGG 1 cut(s) 830
HhaI GCGC 1 cut(s) 1058
Hin6I GCGC 1 cut(s) 1056
HinP1I GCGC 1 cut(s) 1056
HindIII AAGCTT 4 cut(s) 237, 678, 1279, 1604
HpaII CCGG 1 cut(s) 830
HphI GGTGA 4 cut(s) 96, 362, 517, 740
Hpy166II GTNNAC 3 cut(s) 456, 689, 1636
Hpy188III TCNNGA 5 cut(s) 518, 745, 887, 1376, 1610
Hpy8I GTNNAC 3 cut(s) 456, 689, 1636
Hpy99I CGWCG 3 cut(s) 287, 652, 1487
HpyAV CCTTC 4 cut(s) 99, 959, 1373, 1664
HpyCH4III ACNGT 4 cut(s) 350, 450, 497, 665
HpyCH4IV ACGT 2 cut(s) 162, 1445
HpyF10VI GCNNNNNNNGC 1 cut(s) 1541
HpyF3I CTNAG 5 cut(s) 755, 861, 1046, 1117, 1407
HpySE526I ACGT 2 cut(s) 162, 1445
HspAI GCGC 1 cut(s) 1056
LguI GCTCTTC 1 cut(s) 284
LmnI GCTCC 3 cut(s) 1005, 1247, 1389
Lsp1109I GCAGC 2 cut(s) 1290, 1553
LweI GCATC 2 cut(s) 256, 871
MaeI CTAG 6 cut(s) 141, 374, 543, 548, 1754, 1771
MaeII ACGT 2 cut(s) 162, 1445
MaeIII GTNAC 5 cut(s) 307, 350, 866, 1102, 1559
MflI RGATCY 1 cut(s) 30
MhlI GDGCHC 3 cut(s) 370, 1118, 1386
MlyI GAGTC 2 cut(s) 400, 757
MmeI TCCRAC 1 cut(s) 374
MnlI CCTC 9 cut(s) 26, 130, 595, 1333, 1358, 1423, 1480, 1547, 1704
MseI TTAA 3 cut(s) 660, 1083, 1502
MslI CAYNNNNRTG 5 cut(s) 410, 558, 830, 876, 1192
MspI CCGG 1 cut(s) 830
MspR9I CCNGG 2 cut(s) 1165, 1740
Mva1269I GAATGC 1 cut(s) 937
MvaI CCWGG 2 cut(s) 1165, 1740
MwoI GCNNNNNNNGC 1 cut(s) 1541
NcoI CCATGG 1 cut(s) 1360
NheI GCTAGC 1 cut(s) 140
NlaIV GGNNCC 1 cut(s) 1385
NmuCI GTSAC 1 cut(s) 350
NspI RCATGY 2 cut(s) 765, 1535
OliI CACNNNNGTG 1 cut(s) 410
PaeI GCATGC 1 cut(s) 765
PaeR7I CTCGAG 1 cut(s) 745
PciSI GCTCTTC 1 cut(s) 284
PctI GAATGC 1 cut(s) 937
PflMI CCANNNNNTGG 1 cut(s) 1590
PfoI TCCNGGA 1 cut(s) 1163
PkrI GCNGC 3 cut(s) 1305, 1543, 1690
PleI GAGTC 2 cut(s) 399, 756
PmaCI CACGTG 1 cut(s) 1446
PmlI CACGTG 1 cut(s) 1446
PpsI GAGTC 2 cut(s) 399, 756
Ppu21I YACGTR 1 cut(s) 1446
Psp124BI GAGCTC 1 cut(s) 370
Psp6I CCWGG 2 cut(s) 1163, 1738
PspCI CACGTG 1 cut(s) 1446
PspGI CCWGG 2 cut(s) 1163, 1738
PspN4I GGNNCC 1 cut(s) 1385
PstI CTGCAG 1 cut(s) 1308
PsuI RGATCY 1 cut(s) 30
RsaI GTAC 2 cut(s) 457, 541
RsaNI GTAC 2 cut(s) 456, 540
RseI CAYNNNNRTG 5 cut(s) 410, 558, 830, 876, 1192
SacI GAGCTC 1 cut(s) 370
SapI GCTCTTC 1 cut(s) 284
SaqAI TTAA 3 cut(s) 660, 1083, 1502
SatI GCNGC 3 cut(s) 1304, 1542, 1689
ScaI AGTACT 1 cut(s) 541
SchI GAGTC 2 cut(s) 400, 757
ScrFI CCNGG 2 cut(s) 1165, 1740
SduI GDGCHC 3 cut(s) 370, 1118, 1386
SfaNI GCATC 2 cut(s) 256, 871
SfcI CTRYAG 2 cut(s) 108, 1304
Sfr274I CTCGAG 1 cut(s) 745
SlaI CTCGAG 1 cut(s) 745
SmiMI CAYNNNNRTG 5 cut(s) 410, 558, 830, 876, 1192
SmlI CTYRAG 3 cut(s) 692, 745, 1004
SmoI CTYRAG 3 cut(s) 692, 745, 1004
SpeI ACTAGT 1 cut(s) 542
SphI GCATGC 1 cut(s) 765
SsiI CCGC 2 cut(s) 605, 1688
SspI AATATT 1 cut(s) 304
SspMI CTAG 6 cut(s) 141, 374, 543, 548, 1754, 1771
SstI GAGCTC 1 cut(s) 370
StyD4I CCNGG 2 cut(s) 1163, 1738
StyI CCWWGG 1 cut(s) 1360
TaaI ACNGT 4 cut(s) 350, 450, 497, 665
TaiI ACGT 2 cut(s) 165, 1448
TaqII GACCGA 1 cut(s) 1123
TatI WGTACW 2 cut(s) 455, 539
TauI GCSGC 1 cut(s) 1691
Tru1I TTAA 3 cut(s) 660, 1083, 1502
Tru9I TTAA 3 cut(s) 660, 1083, 1502
TscAI CASTG 4 cut(s) 412, 500, 763, 1245
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 2 cut(s) 1303, 1541
Tsp45I GTSAC 1 cut(s) 350
TspGWI ACGGA 1 cut(s) 1376
TspRI CASTG 4 cut(s) 412, 500, 763, 1245
Van91I CCANNNNNTGG 1 cut(s) 1590
XagI CCTNNNNNAGG 1 cut(s) 1162
XapI RAATTY 4 cut(s) 257, 1061, 1174, 1504
XceI RCATGY 2 cut(s) 765, 1535
XcmI CCANNNNNNNNNTGG 1 cut(s) 1746
XhoI CTCGAG 1 cut(s) 745
XspI CTAG 6 cut(s) 141, 374, 543, 548, 1754, 1771
ZrmI AGTACT 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.