Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000517.1

Orthogroup ID

OG0004368

Physical Location & Seq

Genomic Coordinates Forward (+)

132273 .. 132804

Gene Structure 532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000517.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atgagtttacatttagcagcctgctcaggtgcaagtagtacttggggatcttgtgaacccggaaagcatcatcatggcactgttactagcagtctcattgaccttcttgggcgagctggtcttttggatgaggctttcattgttttgacctcgatgtcaagcaaacctgatccaagtacatttagagcattcataggggcttgtcattgggctgatgttgcaagggtacgccaaatgatgaggtacagttgtgatcagaaagctccaggttgtagctggctggaggcaggcggcgacattcatacgtttgtatcaggtgatgagtcccacccacaagcatcacaggtgtatgttatgctagggatgttgctcagggtgatgaaggagatcgaactggagaagaattatatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

137

Amino Acids

14.95

Weight (kDa)

6.13

Isoelectric Point (pI)

46.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46050
fragaria_vesca	FvH4_7g14820
malus_domestica	MD01G1066700.v1.1 MD11G1207600.v1.1
pyrus_communis	pycom01g09600 pycom01g22640 pycom17g24510
rosa_chinensis	RchiOBHm_Chr1g0356771 RchiOBHm_Chr1g0356781 RchiOBHm_Chr1g0375691 RchiOBHm_Chr2g0089631 RchiOBHm_Chr4g0418871
rosa_laevigata	RLG00000011901 RLG00000028084
rosa_multiflora	Rmu_co8104928.1_g000001 Rmu_co8368077.1_g000001 Rmu_sc0000517.1_g000030 Rmu_sc0000935.1_g000021 Rmu_sc0002219.1_g000014 Rmu_sc0005718.1_g000009
rosa_roxburghii	Rroxscaffold_4G00299370
rosa_rugosa	Rorug01G0251100
rosa_samantha	Rh1AG265300 Rh1AG265400 Rh1BG232700 Rh1BG232800 Rh1CG248800 Rh1CG248900 Rh1DG260300 Rh4BG214000 Rh6AG008500
rosa_wichuraiana	Rw4G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	154
AciI	CCGC	1 cut(s)	291
AclWI	GGATC	2 cut(s)	55, 164
AfaI	GTAC	4 cut(s)	40, 178, 228, 245
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	3 cut(s)	116, 263, 276
AluI	AGCT	3 cut(s)	116, 263, 276
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	2 cut(s)	55, 164
ApeKI	GCWGC	1 cut(s)	17
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	329, 388
BaeI	ACNNNNGTAYC	4 cut(s)	235, 268, 294, 327
BbvI	GCAGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	267
BclI	TGATCA	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	2 cut(s)	87, 359
BisI	GCNGC	2 cut(s)	18, 292
BlsI	GCNGC	2 cut(s)	19, 293
BmcAI	AGTACT	1 cut(s)	40
Bme1390I	CCNGG	2 cut(s)	60, 267
BmrFI	CCNGG	2 cut(s)	60, 267
BmsI	GCATC	2 cut(s)	76, 347
BpmI	CTGGAG	2 cut(s)	249, 302
Bpu10I	CCTNAGC	2 cut(s)	25, 371
BpuMI	CCSGG	1 cut(s)	60
Bse1I	ACTGG	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	267
BseGI	GGATG	2 cut(s)	133, 369
BseMII	CTCAG	2 cut(s)	39, 385
BseNI	ACTGG	1 cut(s)	399
BseXI	GCAGC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	310
BsmAI	GTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	310
BsmI	GAATGC	1 cut(s)	188
Bsp143I	GATC	4 cut(s)	47, 169, 253, 387
BspACI	CCGC	1 cut(s)	291
BspCNI	CTCAG	2 cut(s)	38, 384
BspPI	GGATC	2 cut(s)	55, 164
BsrI	ACTGG	1 cut(s)	399
BssMI	GATC	4 cut(s)	47, 169, 253, 387
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	82, 248
BstC8I	GCNNGC	4 cut(s)	22, 114, 278, 289
BstDEI	CTNAG	2 cut(s)	25, 371
BstF5I	GGATG	2 cut(s)	133, 369
BstKTI	GATC	4 cut(s)	50, 172, 256, 390
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	4 cut(s)	47, 169, 253, 387
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNI	CCWGG	1 cut(s)	267
BstSCI	CCNGG	2 cut(s)	58, 265
BstV1I	GCAGC	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	133, 369
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	4 cut(s)	22, 114, 278, 289
Csp6I	GTAC	4 cut(s)	39, 177, 227, 244
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	8 cut(s)	20, 116, 134, 200, 212, 263, 276, 280
CviKI_1	RGCY	8 cut(s)	20, 116, 134, 200, 212, 263, 276, 280
CviQI	GTAC	4 cut(s)	39, 177, 227, 244
DdeI	CTNAG	2 cut(s)	25, 371
DpnI	GATC	4 cut(s)	49, 171, 255, 389
DpnII	GATC	4 cut(s)	47, 169, 253, 387
DrdI	GACNNNNNNGTC	1 cut(s)	154
DseDI	GACNNNNNNGTC	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	265
FaeI	CATG	1 cut(s)	77
FaiI	YATR	7 cut(s)	75, 194, 303, 351, 356, 408, 410
FalI	AAGNNNNNCTT	2 cut(s)	25, 57
FaqI	GGGAC	1 cut(s)	310
FatI	CATG	1 cut(s)	73
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	2 cut(s)	18, 292
FokI	GGATG	2 cut(s)	140, 376
Fsp4HI	GCNGC	2 cut(s)	18, 292
FspBI	CTAG	2 cut(s)	87, 359
GluI	GCNGC	2 cut(s)	18, 292
GsuI	CTGGAG	2 cut(s)	249, 302
HapII	CCGG	1 cut(s)	60
Hin1II	CATG	1 cut(s)	77
HinfI	GANTC	1 cut(s)	323
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	2 cut(s)	329, 388
Hpy166II	GTNNAC	2 cut(s)	8, 56
Hpy188I	TCNGA	1 cut(s)	258
Hpy8I	GTNNAC	2 cut(s)	8, 56
HpyAV	CCTTC	2 cut(s)	113, 376
HpyCH4III	ACNGT	2 cut(s)	82, 248
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	2 cut(s)	32, 221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	2 cut(s)	25, 371
HpySE526I	ACGT	1 cut(s)	305
Hsp92II	CATG	1 cut(s)	77
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	4 cut(s)	47, 169, 253, 387
LmnI	GCTCC	1 cut(s)	268
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	2 cut(s)	76, 347
MaeI	CTAG	2 cut(s)	87, 359
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	4 cut(s)	49, 171, 255, 389
MboI	GATC	4 cut(s)	47, 169, 253, 387
MboII	GAAGA	1 cut(s)	412
MflI	RGATCY	1 cut(s)	47
MluCI	AATT	1 cut(s)	403
MlyI	GAGTC	1 cut(s)	332
MnlI	CCTC	4 cut(s)	124, 160, 234, 277
MslI	CAYNNNNRTG	1 cut(s)	72
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	2 cut(s)	60, 267
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	267
MwoI	GCNNNNNNNGC	1 cut(s)	218
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	4 cut(s)	47, 169, 253, 387
NlaIII	CATG	1 cut(s)	77
PctI	GAATGC	1 cut(s)	188
PkrI	GCNGC	2 cut(s)	19, 293
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	47
RsaI	GTAC	4 cut(s)	40, 178, 228, 245
RsaNI	GTAC	4 cut(s)	39, 177, 227, 244
RseI	CAYNNNNRTG	1 cut(s)	72
SatI	GCNGC	2 cut(s)	18, 292
Sau3AI	GATC	4 cut(s)	47, 169, 253, 387
ScaI	AGTACT	1 cut(s)	40
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	2 cut(s)	60, 267
SfaNI	GCATC	2 cut(s)	76, 347
SmiMI	CAYNNNNRTG	1 cut(s)	72
Sse9I	AATT	1 cut(s)	403
SsiI	CCGC	1 cut(s)	291
SspMI	CTAG	2 cut(s)	87, 359
StyD4I	CCNGG	2 cut(s)	58, 265
TaaI	ACNGT	2 cut(s)	82, 248
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	2 cut(s)	152, 390
TasI	AATT	1 cut(s)	403
TatI	WGTACW	2 cut(s)	38, 176
TauI	GCSGC	1 cut(s)	294
TscAI	CASTG	1 cut(s)	85
TseI	GCWGC	1 cut(s)	17
TspDTI	ATGAA	4 cut(s)	127, 181, 290, 395
TspRI	CASTG	1 cut(s)	85
XcmI	CCANNNNNNNNNTGG	1 cut(s)	273
XspI	CTAG	2 cut(s)	87, 359
ZrmI	AGTACT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.