Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8104928.1

Orthogroup ID

OG0004368

Physical Location & Seq

Genomic Coordinates Reverse (-)

144 .. 551

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8104928.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgccatttgaacctgatgcaatggtgtggaagactttactgggtgcctgcagggcttgtggcaatattgaattagcgagtcaagtagcagactatctgctagtgctagagcctgaagagcactgcacttatgttcttctttctgacatgtatggacatcttaaaaggtgggatgctaaagctagtgtaaagaagcttatgagggaaaggggtgttaggaaagtccctggttggagttggatagaactcaacaatgaggtgcatgcatttaaagctgaagatcattcacaccctcattgtgaagagatatattttgtattgggaattctaatggaggaaatcaaaaggctggacattgttgctaatctaaaacagtctttgggtgagggagatgacagtgggacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

135

Amino Acids

15.38

Weight (kDa)

5.32

Isoelectric Point (pI)

58.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46050
fragaria_vesca	FvH4_7g14820
malus_domestica	MD01G1066700.v1.1 MD11G1207600.v1.1
pyrus_communis	pycom01g09600 pycom01g22640 pycom17g24510
rosa_chinensis	RchiOBHm_Chr1g0356771 RchiOBHm_Chr1g0356781 RchiOBHm_Chr1g0375691 RchiOBHm_Chr2g0089631 RchiOBHm_Chr4g0418871
rosa_laevigata	RLG00000011901 RLG00000028084
rosa_multiflora	Rmu_co8104928.1_g000001 Rmu_co8368077.1_g000001 Rmu_sc0000517.1_g000030 Rmu_sc0000935.1_g000021 Rmu_sc0002219.1_g000014 Rmu_sc0005718.1_g000009
rosa_roxburghii	Rroxscaffold_4G00299370
rosa_rugosa	Rorug01G0251100
rosa_samantha	Rh1AG265300 Rh1AG265400 Rh1BG232700 Rh1BG232800 Rh1CG248800 Rh1CG248900 Rh1DG260300 Rh4BG214000 Rh6AG008500
rosa_wichuraiana	Rw4G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	44
AcsI	RAATTY	1 cut(s)	324
AcuI	CTGAAG	2 cut(s)	135, 297
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	2 cut(s)	11, 71
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	3 cut(s)	182, 196, 275
AluI	AGCT	3 cut(s)	182, 196, 275
Alw21I	GWGCWC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	324
AsuHPI	GGTGA	1 cut(s)	395
BanI	GGYRCC	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	123
BciT130I	CCWGG	1 cut(s)	228
BfaI	CTAG	3 cut(s)	101, 107, 183
BfmI	CTRYAG	1 cut(s)	49
BglI	GCCNNNNNGGC	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	228
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	228
BmrI	ACTGGG	1 cut(s)	50
BmsI	GCATC	2 cut(s)	7, 163
BmuI	ACTGGG	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	226
Bse1I	ACTGG	1 cut(s)	45
Bse3DI	GCAATG	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	1 cut(s)	178
BseMI	GCAATG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	45
BsgI	GTGCAG	1 cut(s)	109
BshNI	GGYRCC	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	46
BspMAI	CTGCAG	1 cut(s)	53
BspQI	GCTCTTC	1 cut(s)	111
BspT107I	GGYRCC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	45
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	1 cut(s)	280
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	375, 398
Bst6I	CTCTTC	2 cut(s)	111, 297
BstC8I	GCNNGC	2 cut(s)	49, 264
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 118, 272
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	2 cut(s)	151, 266
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	1 cut(s)	49
BstV2I	GAAGAC	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	178
BtsI	GCAGTG	1 cut(s)	121
BtsIMutI	CAGTG	2 cut(s)	121, 403
Cac8I	GCNNGC	2 cut(s)	49, 264
CviAII	CATG	2 cut(s)	148, 263
CviJI	RGCY	6 cut(s)	56, 112, 182, 196, 275, 349
CviKI_1	RGCY	6 cut(s)	56, 112, 182, 196, 275, 349
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
DraI	TTTAAA	1 cut(s)	271
Eam1104I	CTCTTC	2 cut(s)	111, 297
EarI	CTCTTC	2 cut(s)	111, 297
Eco57I	CTGAAG	2 cut(s)	135, 297
EcoRI	GAATTC	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	226
EcoT22I	ATGCAT	1 cut(s)	268
FaeI	CATG	2 cut(s)	151, 266
FaiI	YATR	6 cut(s)	132, 149, 153, 200, 264, 310
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	2 cut(s)	147, 262
FokI	GGATG	1 cut(s)	185
FspBI	CTAG	3 cut(s)	101, 107, 183
Hin1II	CATG	2 cut(s)	151, 266
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	1 cut(s)	79
HphI	GGTGA	1 cut(s)	395
Hpy188I	TCNGA	1 cut(s)	145
HpyCH4III	ACNGT	2 cut(s)	375, 398
HpyCH4V	TGCA	5 cut(s)	20, 51, 126, 262, 266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 118, 272
Hsp92II	CATG	2 cut(s)	151, 266
Kzo9I	GATC	1 cut(s)	280
LguI	GCTCTTC	1 cut(s)	111
LpnPI	CCDG	8 cut(s)	26, 27, 37, 61, 126, 213, 240, 335
LweI	GCATC	2 cut(s)	7, 163
MaeI	CTAG	3 cut(s)	101, 107, 183
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	5 cut(s)	43, 128, 128, 290, 314
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	2 cut(s)	71, 324
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	2 cut(s)	212, 218
MnlI	CCTC	5 cut(s)	195, 250, 303, 328, 379
Mph1103I	ATGCAT	1 cut(s)	268
MseI	TTAA	2 cut(s)	162, 270
MspR9I	CCNGG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	3 cut(s)	53, 118, 272
NdeII	GATC	1 cut(s)	280
NlaIII	CATG	2 cut(s)	151, 266
NlaIV	GGNNCC	1 cut(s)	46
NsiI	ATGCAT	1 cut(s)	268
NspI	RCATGY	2 cut(s)	151, 266
PaeI	GCATGC	1 cut(s)	266
PciI	ACATGT	1 cut(s)	147
PciSI	GCTCTTC	1 cut(s)	111
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
PscI	ACATGT	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	162, 270
Sau3AI	GATC	1 cut(s)	280
SbfI	CCTGCAGG	1 cut(s)	53
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	228
SdaI	CCTGCAGG	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	6 cut(s)	16, 170, 184, 198, 261, 277
SfaNI	GCATC	2 cut(s)	7, 163
SfcI	CTRYAG	1 cut(s)	49
SphI	GCATGC	1 cut(s)	266
Sse8387I	CCTGCAGG	1 cut(s)	53
Sse9I	AATT	2 cut(s)	71, 324
SspI	AATATT	1 cut(s)	67
SspMI	CTAG	3 cut(s)	101, 107, 183
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	2 cut(s)	375, 398
TasI	AATT	2 cut(s)	71, 324
Tru1I	TTAA	2 cut(s)	162, 270
Tru9I	TTAA	2 cut(s)	162, 270
TscAI	CASTG	2 cut(s)	128, 403
TspRI	CASTG	2 cut(s)	128, 403
XapI	RAATTY	1 cut(s)	324
XceI	RCATGY	2 cut(s)	151, 266
XspI	CTAG	3 cut(s)	101, 107, 183
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.