Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005718.1

Orthogroup ID

OG0004368

Physical Location & Seq

Genomic Coordinates Forward (+)

29222 .. 30533

Gene Structure 1312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005718.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

atgagtttacatttagcagcctgcttaggtgcaagtagtacttggggatcttgtgaacccggaaagcatcatcatggcactgttactagacagtcgtttaataacataggcaatgctcgcaaggcttttgatgcaatgtccatcaagaatgttgtttcttggaacactataattgtgggatatggacagcatggaaaagggattcaagcgataaaacttctgcgggaaatgtttagagaacatttttatcctgatgagtttattctggcaagcattgttagcacatgtggcaatgtaccatctgctaatgaacttatggaagttcatgcttacatccacggacgtagccaggatcgtaaggaggttatatgtgcctatgcattccatggtcttgccaaagctactcagatttttgacaaaatgttatcttatggcataagacccgatggaattgcctttctttggggttctttctctgcaggtagtcatggagggttagtaaagaaagggattcattactttaaattaatgactaatgaccatcaagtttttccagattccgagcattatacctgtctcattgaccttcttgggcgagctggtcttttggatgaggctttcattgttttgacctcgacgtcaatcaaacctgatccaagtacatttggagcattcataggggcttgtaaagtcaatggaaatgtaggattagcaaaatgggctgcagaaaagctttttacattagaaccaaacaaacctgtgaattgtactctcatgtctaacatctattctactgaaggtcattgggctgatgttgcaagggtaggcagcgacattcatacgtttgtatcaggtgatgagtcccacccacaagcatcacacacaggtgtatgttatgctagggatgttgctgagggtgatgaaggagatcgaactggagaagaattatatgtaggatcagtgattaagttagatacagttctggatgaatctgctagaagtttgcctaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

337

Amino Acids

36.72

Weight (kDa)

6.17

Isoelectric Point (pI)

30.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46050
fragaria_vesca	FvH4_7g14820
malus_domestica	MD01G1066700.v1.1 MD11G1207600.v1.1
pyrus_communis	pycom01g09600 pycom01g22640 pycom17g24510
rosa_chinensis	RchiOBHm_Chr1g0356771 RchiOBHm_Chr1g0356781 RchiOBHm_Chr1g0375691 RchiOBHm_Chr2g0089631 RchiOBHm_Chr4g0418871
rosa_laevigata	RLG00000011901 RLG00000028084
rosa_multiflora	Rmu_co8104928.1_g000001 Rmu_co8368077.1_g000001 Rmu_sc0000517.1_g000030 Rmu_sc0000935.1_g000021 Rmu_sc0002219.1_g000014 Rmu_sc0005718.1_g000009
rosa_roxburghii	Rroxscaffold_4G00299370
rosa_rugosa	Rorug01G0251100
rosa_samantha	Rh1AG265300 Rh1AG265400 Rh1BG232700 Rh1BG232800 Rh1CG248800 Rh1CG248900 Rh1DG260300 Rh4BG214000 Rh6AG008500
rosa_wichuraiana	Rw4G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	637
AatII	GACGTC	1 cut(s)	641
Acc36I	ACCTGC	1 cut(s)	470
AciI	CCGC	1 cut(s)	223
AclWI	GGATC	4 cut(s)	55, 360, 647, 964
AcuI	CTGAAG	1 cut(s)	816
AcyI	GRCGYC	1 cut(s)	638
AfaI	GTAC	4 cut(s)	40, 297, 661, 769
AfiI	CCNNNNNNNGG	1 cut(s)	462
AflIII	ACRYGT	1 cut(s)	284
AgsI	TTSAA	1 cut(s)	206
AjnI	CCWGG	1 cut(s)	348
AleI	CACNNNNGTG	1 cut(s)	885
AluBI	AGCT	3 cut(s)	401, 599, 733
AluI	AGCT	3 cut(s)	401, 599, 733
Alw26I	GTCTC	1 cut(s)	581
AlwI	GGATC	4 cut(s)	55, 360, 647, 964
ApeKI	GCWGC	3 cut(s)	17, 722, 828
AseI	ATTAAT	1 cut(s)	527
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	866, 929
BaeI	ACNNNNGTAYC	2 cut(s)	831, 864
BbvCI	CCTCAGC	1 cut(s)	912
BbvI	GCAGC	3 cut(s)	29, 709, 840
BccI	CCATC	4 cut(s)	149, 307, 440, 549
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BciT130I	CCWGG	1 cut(s)	350
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	581
BfaI	CTAG	3 cut(s)	87, 900, 996
BfmI	CTRYAG	2 cut(s)	477, 723
BfuAI	ACCTGC	1 cut(s)	470
BisI	GCNGC	3 cut(s)	18, 723, 829
BlsI	GCNGC	3 cut(s)	19, 724, 830
BmcAI	AGTACT	1 cut(s)	40
Bme1390I	CCNGG	2 cut(s)	60, 350
BmrFI	CCNGG	2 cut(s)	60, 350
BmsI	GCATC	3 cut(s)	76, 121, 884
BpmI	CTGGAG	1 cut(s)	957
Bpu10I	CCTNAGC	2 cut(s)	25, 912
BpuMI	CCSGG	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	638
BsaJI	CCNNGG	2 cut(s)	337, 385
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bsc4I	CCNNNNNNNGG	1 cut(s)	462
Bse1I	ACTGG	1 cut(s)	940
Bse3DI	GCAATG	3 cut(s)	118, 141, 298
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	2 cut(s)	337, 385
BseGI	GGATG	4 cut(s)	333, 616, 910, 991
BseLI	CCNNNNNNNGG	1 cut(s)	462
BseMI	GCAATG	3 cut(s)	118, 141, 298
BseMII	CTCAG	2 cut(s)	419, 903
BseNI	ACTGG	1 cut(s)	940
BseXI	GCAGC	3 cut(s)	29, 709, 840
BsiSI	CCGG	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	847
BslI	CCNNNNNNNGG	1 cut(s)	462
BsmAI	GTCTC	1 cut(s)	581
BsmFI	GGGAC	1 cut(s)	847
BsmI	GAATGC	2 cut(s)	380, 671
Bsp143I	GATC	5 cut(s)	47, 352, 652, 928, 956
Bsp19I	CCATGG	1 cut(s)	385
BspACI	CCGC	1 cut(s)	223
BspCNI	CTCAG	2 cut(s)	418, 904
BspMAI	CTGCAG	2 cut(s)	481, 727
BspMI	ACCTGC	1 cut(s)	470
BspPI	GGATC	4 cut(s)	55, 360, 647, 964
BsrDI	GCAATG	3 cut(s)	118, 141, 298
BsrI	ACTGG	1 cut(s)	940
BssECI	CCNNGG	2 cut(s)	337, 385
BssMI	GATC	5 cut(s)	47, 352, 652, 928, 956
BssNI	GRCGYC	1 cut(s)	638
BssT1I	CCWWGG	1 cut(s)	385
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	3 cut(s)	82, 93, 979
BstACI	GRCGYC	1 cut(s)	638
BstC8I	GCNNGC	4 cut(s)	22, 118, 271, 597
BstDEI	CTNAG	3 cut(s)	25, 405, 912
BstDSI	CCRYGG	2 cut(s)	337, 385
BstF5I	GGATG	4 cut(s)	333, 616, 910, 991
BstKTI	GATC	5 cut(s)	50, 355, 655, 931, 959
BstMAI	GTCTC	1 cut(s)	581
BstMBI	GATC	5 cut(s)	47, 352, 652, 928, 956
BstMWI	GCNNNNNNNGC	7 cut(s)	117, 122, 131, 279, 288, 719, 815
BstNI	CCWGG	1 cut(s)	350
BstNSI	RCATGY	1 cut(s)	288
BstSCI	CCNGG	2 cut(s)	58, 348
BstSFI	CTRYAG	2 cut(s)	477, 723
BstV1I	GCAGC	3 cut(s)	29, 709, 840
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BtgI	CCRYGG	2 cut(s)	337, 385
BtsCI	GGATG	4 cut(s)	333, 616, 910, 991
BtsIMutI	CAGTG	2 cut(s)	78, 966
BveI	ACCTGC	1 cut(s)	470
Cac8I	GCNNGC	4 cut(s)	22, 118, 271, 597
Csp6I	GTAC	4 cut(s)	39, 296, 660, 768
CviAII	CATG	7 cut(s)	74, 191, 285, 326, 386, 488, 775
CviQI	GTAC	4 cut(s)	39, 296, 660, 768
DdeI	CTNAG	3 cut(s)	25, 405, 912
DpnI	GATC	5 cut(s)	49, 354, 654, 930, 958
DpnII	GATC	5 cut(s)	47, 352, 652, 928, 956
DraI	TTTAAA	1 cut(s)	523
DrdI	GACNNNNNNGTC	1 cut(s)	637
DseDI	GACNNNNNNGTC	1 cut(s)	637
Eco130I	CCWWGG	1 cut(s)	385
Eco57I	CTGAAG	1 cut(s)	816
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	385
EcoT22I	ATGCAT	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	385
FaeI	CATG	7 cut(s)	77, 194, 288, 329, 389, 491, 778
FalI	AAGNNNNNCTT	2 cut(s)	25, 57
FaqI	GGGAC	1 cut(s)	847
FatI	CATG	7 cut(s)	73, 190, 284, 325, 385, 487, 774
FauI	CCCGC	1 cut(s)	216
Fnu4HI	GCNGC	3 cut(s)	18, 723, 829
FokI	GGATG	4 cut(s)	320, 623, 917, 998
Fsp4HI	GCNGC	3 cut(s)	18, 723, 829
FspBI	CTAG	3 cut(s)	87, 900, 996
GluI	GCNGC	3 cut(s)	18, 723, 829
GsuI	CTGGAG	1 cut(s)	957
HapII	CCGG	1 cut(s)	60
Hin1I	GRCGYC	1 cut(s)	638
Hin1II	CATG	7 cut(s)	77, 194, 288, 329, 389, 491, 778
HindIII	AAGCTT	1 cut(s)	731
HinfI	GANTC	5 cut(s)	202, 511, 557, 860, 989
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	2 cut(s)	866, 929
Hpy166II	GTNNAC	2 cut(s)	8, 56
Hpy188I	TCNGA	2 cut(s)	408, 562
Hpy188III	TCNNGA	4 cut(s)	145, 251, 554, 983
Hpy8I	GTNNAC	2 cut(s)	8, 56
Hpy99I	CGWCG	1 cut(s)	640
HpyAV	CCTTC	3 cut(s)	596, 791, 917
HpyCH4III	ACNGT	3 cut(s)	82, 93, 979
HpyCH4IV	ACGT	3 cut(s)	343, 638, 842
HpyCH4V	TGCA	6 cut(s)	32, 134, 380, 479, 725, 818
HpyF10VI	GCNNNNNNNGC	7 cut(s)	117, 122, 131, 279, 288, 719, 815
HpyF3I	CTNAG	3 cut(s)	25, 405, 912
HpySE526I	ACGT	3 cut(s)	343, 638, 842
Hsp92I	GRCGYC	1 cut(s)	638
Hsp92II	CATG	7 cut(s)	77, 194, 288, 329, 389, 491, 778
Kzo9I	GATC	5 cut(s)	47, 352, 652, 928, 956
LmnI	GCTCC	1 cut(s)	668
Lsp1109I	GCAGC	3 cut(s)	29, 709, 840
LweI	GCATC	3 cut(s)	76, 121, 884
MaeI	CTAG	3 cut(s)	87, 900, 996
MaeII	ACGT	3 cut(s)	343, 638, 842
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	5 cut(s)	49, 354, 654, 930, 958
MboI	GATC	5 cut(s)	47, 352, 652, 928, 956
MboII	GAAGA	1 cut(s)	953
MflI	RGATCY	1 cut(s)	47
MluCI	AATT	5 cut(s)	171, 450, 524, 763, 944
MlyI	GAGTC	1 cut(s)	869
MnlI	CCTC	5 cut(s)	355, 485, 607, 643, 907
Mph1103I	ATGCAT	1 cut(s)	382
MseI	TTAA	4 cut(s)	99, 522, 527, 966
MslI	CAYNNNNRTG	2 cut(s)	72, 885
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	2 cut(s)	60, 350
Mva1269I	GAATGC	2 cut(s)	380, 671
MvaI	CCWGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	7 cut(s)	117, 122, 131, 279, 288, 719, 815
NciI	CCSGG	1 cut(s)	60
NcoI	CCATGG	1 cut(s)	385
NdeII	GATC	5 cut(s)	47, 352, 652, 928, 956
NlaIII	CATG	7 cut(s)	77, 194, 288, 329, 389, 491, 778
NsiI	ATGCAT	1 cut(s)	382
NspI	RCATGY	1 cut(s)	288
OliI	CACNNNNGTG	1 cut(s)	885
PciI	ACATGT	1 cut(s)	284
PctI	GAATGC	2 cut(s)	380, 671
PfeI	GAWTC	4 cut(s)	202, 511, 557, 989
PkrI	GCNGC	3 cut(s)	19, 724, 830
PleI	GAGTC	1 cut(s)	868
PpsI	GAGTC	1 cut(s)	868
PscI	ACATGT	1 cut(s)	284
PshBI	ATTAAT	1 cut(s)	527
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PstI	CTGCAG	2 cut(s)	481, 727
PsuI	RGATCY	1 cut(s)	47
RsaI	GTAC	4 cut(s)	40, 297, 661, 769
RsaNI	GTAC	4 cut(s)	39, 296, 660, 768
RseI	CAYNNNNRTG	2 cut(s)	72, 885
SaqAI	TTAA	4 cut(s)	99, 522, 527, 966
SatI	GCNGC	3 cut(s)	18, 723, 829
Sau3AI	GATC	5 cut(s)	47, 352, 652, 928, 956
ScaI	AGTACT	1 cut(s)	40
SchI	GAGTC	1 cut(s)	869
ScrFI	CCNGG	2 cut(s)	60, 350
SfaNI	GCATC	3 cut(s)	76, 121, 884
SfcI	CTRYAG	2 cut(s)	477, 723
SmiMI	CAYNNNNRTG	2 cut(s)	72, 885
Sse9I	AATT	5 cut(s)	171, 450, 524, 763, 944
SsiI	CCGC	1 cut(s)	223
SspMI	CTAG	3 cut(s)	87, 900, 996
StyD4I	CCNGG	2 cut(s)	58, 348
StyI	CCWWGG	1 cut(s)	385
TaaI	ACNGT	3 cut(s)	82, 93, 979
TaiI	ACGT	3 cut(s)	346, 641, 845
TaqI	TCGA	2 cut(s)	635, 931
TasI	AATT	5 cut(s)	171, 450, 524, 763, 944
TatI	WGTACW	3 cut(s)	38, 659, 767
TfiI	GAWTC	4 cut(s)	202, 511, 557, 989
Tru1I	TTAA	4 cut(s)	99, 522, 527, 966
Tru9I	TTAA	4 cut(s)	99, 522, 527, 966
TscAI	CASTG	2 cut(s)	85, 966
TseI	GCWGC	3 cut(s)	17, 722, 828
TspDTI	ATGAA	8 cut(s)	314, 324, 503, 610, 664, 827, 936, 1002
TspGWI	ACGGA	1 cut(s)	354
TspRI	CASTG	2 cut(s)	85, 966
VspI	ATTAAT	1 cut(s)	527
XceI	RCATGY	1 cut(s)	288
XspI	CTAG	3 cut(s)	87, 900, 996
ZraI	GACGTC	1 cut(s)	639
ZrmI	AGTACT	1 cut(s)	40
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.