Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004368

Physical Location & Seq

Genomic Coordinates Reverse (-)

37178054 .. 37206313

Gene Structure 28260 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG214000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGAGGAATGGTTGTCAATTCTAGAAAGTCAAATATGGCAGTTATCATCCGACAATGAGGATAGCAGGATCATGTCGGTTTTGAAGTTGAGTTTTGACAAATTGTCAACACCACTGAAACAATGTTTTGCATATTGCTCCATGTTCAAGAGAGGTTACTCAATTGAAAGGGATAAGTTGATCCAACTATGGATGGCTCAAGGTTTTCTCCATCCTTCTCATGGTCCCCAAACCAAGCAAGAGATTGAAATGGAGGATATAGGCAATAAGTATTTTGAGACTCTACTAGAGAACTCCTTGTTTCAAGATGCTACAGAGTATGAGGGTGACTGTGGTGTTATCATCACCAGATGCAAGATGCATGATCTTGTGCATGATCTTGCAAACGAAAGCTGGCAGAGTAGAAGCATGTCCATGAAGGCAGATGTTGTGATATGGGGCACATTATTGGCCACAAGTACAACACATGGGAATCTAGAAATAGGAGAAATGGCTGAAAAGAATTTGAAACTGTTGGATCCATCTCATGGGGCAAGTACGGTTCTCATGTCCAACCTACTTGCAGATGCAGGGAAGTGGGAGGAAGCCTCTTTGGAAAGGCGAGTAATGCAGAGCCTAAGACTAACGAGATCACCAGGGCACAGTGATGTTGTTTGGAGAGGTTACTCAATTGAAAAGGATATGTTGATCCAACTATGGATGGCTCAAGGTTTTCTCCATCCTTCTCATGGTCCCCAAACCAAGCAATTGATTGAAATGGAGGATATAGGCAATAAGTATTTTGAGACTCTATTGGAGAACTCCTTGTTTCAAGCTACAGAGTATGGGGATGACTGTGGTGTTATCATCACCAGATTCAAGATGCATGATCTTGTGCATGATCTTGCAAACGAAGTATCCAAGTGTGAGAGCTTGACACCAGACTACACTCATGAGAAGGATGATCATGATATACTTATTCGACATATTGCACGGATTCCTACTCCAACACTAGAAGAAATGTCAAAAATAAACTTCTTTACGGTCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

343

Amino Acids

39.37

Weight (kDa)

5.03

Isoelectric Point (pI)

50.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_DRP	PF23559	48 - 128	8.8e-24	Disease resistance protein Winged helix domain
E_motif	PF20431	156 - 216	2.1e-08	E motif
WHD_DRP	PF23559	221 - 296	4e-21	Disease resistance protein Winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46050
fragaria_vesca	FvH4_7g14820
malus_domestica	MD01G1066700.v1.1 MD11G1207600.v1.1
pyrus_communis	pycom01g09600 pycom01g22640 pycom17g24510
rosa_chinensis	RchiOBHm_Chr1g0356771 RchiOBHm_Chr1g0356781 RchiOBHm_Chr1g0375691 RchiOBHm_Chr2g0089631 RchiOBHm_Chr4g0418871
rosa_laevigata	RLG00000011901 RLG00000028084
rosa_multiflora	Rmu_co8104928.1_g000001 Rmu_co8368077.1_g000001 Rmu_sc0000517.1_g000030 Rmu_sc0000935.1_g000021 Rmu_sc0002219.1_g000014 Rmu_sc0005718.1_g000009
rosa_roxburghii	Rroxscaffold_4G00299370
rosa_rugosa	Rorug01G0251100
rosa_samantha	Rh1AG265300 Rh1AG265400 Rh1BG232700 Rh1BG232800 Rh1CG248800 Rh1CG248900 Rh1DG260300 Rh4BG214000 Rh6AG008500
rosa_wichuraiana	Rw4G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	527
AclWI	GGATC	5 cut(s)	77, 175, 512, 525, 682
AcoI	YGGCCR	1 cut(s)	450
AcsI	RAATTY	1 cut(s)	502
AfaI	GTAC	2 cut(s)	460, 538
AfiI	CCNNNNNNNGG	3 cut(s)	221, 527, 728
AhdI	GACNNNNNGTC	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	634
AluBI	AGCT	3 cut(s)	393, 815, 912
AluI	AGCT	3 cut(s)	393, 815, 912
Alw26I	GTCTC	2 cut(s)	272, 779
AlwI	GGATC	5 cut(s)	77, 175, 512, 525, 682
AoxI	GGCC	1 cut(s)	450
ApoI	RAATTY	1 cut(s)	502
AspS9I	GGNCC	2 cut(s)	224, 731
AsuHPI	GGTGA	4 cut(s)	337, 338, 624, 841
AvaII	GGWCC	2 cut(s)	224, 731
BaeGI	GKGCMC	2 cut(s)	443, 642
BalI	TGGCCA	1 cut(s)	452
BamHI	GGATCC	1 cut(s)	517
BccI	CCATC	5 cut(s)	187, 219, 529, 694, 726
BciT130I	CCWGG	1 cut(s)	636
BciVI	GTATCC	1 cut(s)	907
BclI	TGATCA	1 cut(s)	943
BcoDI	GTCTC	2 cut(s)	272, 779
BfaI	CTAG	4 cut(s)	23, 287, 476, 992
BfmI	CTRYAG	2 cut(s)	312, 816
BfuI	GTATCC	1 cut(s)	907
Bme1390I	CCNGG	1 cut(s)	636
Bme18I	GGWCC	2 cut(s)	224, 731
BmeRI	GACNNNNNGTC	1 cut(s)	103
BmgT120I	GGNCC	2 cut(s)	224, 731
BmiI	GGNNCC	3 cut(s)	226, 519, 733
BmrFI	CCNGG	1 cut(s)	636
BmsI	GCATC	5 cut(s)	298, 341, 348, 556, 852
BplI	GAGNNNNNCTC	2 cut(s)	572, 604
BpuEI	CTTGAG	2 cut(s)	183, 690
BsaJI	CCNNGG	1 cut(s)	635
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	3 cut(s)	221, 527, 728
BseBI	CCWGG	1 cut(s)	636
BseDI	CCNNGG	1 cut(s)	635
BseGI	GGATG	7 cut(s)	47, 198, 211, 705, 718, 835, 946
BseLI	CCNNNNNNNGG	3 cut(s)	221, 527, 728
BseSI	GKGCMC	2 cut(s)	443, 642
Bsh1285I	CGRYCG	1 cut(s)	1026
BshFI	GGCC	1 cut(s)	452
BsiEI	CGRYCG	1 cut(s)	1026
BslFI	GGGAC	2 cut(s)	210, 717
BslI	CCNNNNNNNGG	3 cut(s)	221, 527, 728
BsmAI	GTCTC	2 cut(s)	272, 779
BsmFI	GGGAC	2 cut(s)	210, 717
BsnI	GGCC	1 cut(s)	452
Bsp1286I	GDGCHC	2 cut(s)	443, 642
BspANI	GGCC	1 cut(s)	452
BspHI	TCATGA	2 cut(s)	931, 946
BspLI	GGNNCC	3 cut(s)	226, 519, 733
BspPI	GGATC	5 cut(s)	77, 175, 512, 525, 682
BssECI	CCNNGG	1 cut(s)	635
Bst2UI	CCWGG	1 cut(s)	636
Bst4CI	ACNGT	6 cut(s)	332, 513, 541, 644, 836, 1024
BstC8I	GCNNGC	1 cut(s)	395
BstDEI	CTNAG	1 cut(s)	617
BstF5I	GGATG	7 cut(s)	47, 198, 211, 705, 718, 835, 946
BstMAI	GTCTC	2 cut(s)	272, 779
BstMCI	CGRYCG	1 cut(s)	1026
BstMWI	GCNNNNNNNGC	1 cut(s)	607
BstNI	CCWGG	1 cut(s)	636
BstNSI	RCATGY	1 cut(s)	412
BstSCI	CCNGG	1 cut(s)	634
BstSFI	CTRYAG	2 cut(s)	312, 816
BstSLI	GKGCMC	2 cut(s)	443, 642
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BsuI	GTATCC	1 cut(s)	907
BsuRI	GGCC	1 cut(s)	452
BtsCI	GGATG	7 cut(s)	47, 198, 211, 705, 718, 835, 946
BtsIMutI	CAGTG	2 cut(s)	113, 649
Cac8I	GCNNGC	1 cut(s)	395
CciI	TCATGA	2 cut(s)	931, 946
Cfr13I	GGNCC	2 cut(s)	224, 731
Csp6I	GTAC	2 cut(s)	459, 537
CviJI	RGCY	9 cut(s)	197, 393, 452, 494, 587, 615, 704, 815, 912
CviKI_1	RGCY	9 cut(s)	197, 393, 452, 494, 587, 615, 704, 815, 912
CviQI	GTAC	2 cut(s)	459, 537
DdeI	CTNAG	1 cut(s)	617
DriI	GACNNNNNGTC	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	450
Eam1105I	GACNNNNNGTC	1 cut(s)	103
Eco47I	GGWCC	2 cut(s)	224, 731
EcoRII	CCWGG	1 cut(s)	634
EcoT22I	ATGCAT	2 cut(s)	363, 867
FaqI	GGGAC	2 cut(s)	210, 717
FbaI	TGATCA	1 cut(s)	943
FokI	GGATG	7 cut(s)	34, 198, 205, 705, 712, 842, 953
FspBI	CTAG	4 cut(s)	23, 287, 476, 992
HaeIII	GGCC	1 cut(s)	452
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HinfI	GANTC	5 cut(s)	280, 472, 787, 855, 976
HphI	GGTGA	4 cut(s)	337, 338, 624, 841
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	7 cut(s)	23, 148, 305, 476, 859, 932, 947
Hpy8I	GTNNAC	1 cut(s)	108
HpyAV	CCTTC	4 cut(s)	225, 412, 732, 931
HpyCH4III	ACNGT	6 cut(s)	332, 513, 541, 644, 836, 1024
HpyF10VI	GCNNNNNNNGC	1 cut(s)	607
HpyF3I	CTNAG	1 cut(s)	617
Ksp22I	TGATCA	1 cut(s)	943
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	8 cut(s)	52, 361, 379, 555, 621, 648, 865, 933
LweI	GCATC	5 cut(s)	298, 341, 348, 556, 852
MaeI	CTAG	4 cut(s)	23, 287, 476, 992
MaeIII	GTNAC	3 cut(s)	155, 326, 662
MboII	GAAGA	1 cut(s)	1007
MfeI	CAATTG	3 cut(s)	162, 669, 746
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	2 cut(s)	443, 642
MlsI	TGGCCA	1 cut(s)	452
MluCI	AATT	6 cut(s)	18, 101, 162, 502, 669, 746
MluNI	TGGCCA	1 cut(s)	452
MlyI	GAGTC	2 cut(s)	274, 781
MmeI	TCCRAC	6 cut(s)	75, 208, 495, 576, 715, 1010
MnlI	CCTC	8 cut(s)	52, 146, 247, 316, 574, 598, 653, 754
Mox20I	TGGCCA	1 cut(s)	452
Mph1103I	ATGCAT	2 cut(s)	363, 867
MscI	TGGCCA	1 cut(s)	452
MseI	TTAA	1 cut(s)	1030
MslI	CAYNNNNRTG	2 cut(s)	413, 645
Msp20I	TGGCCA	1 cut(s)	452
MspR9I	CCNGG	1 cut(s)	636
MunI	CAATTG	3 cut(s)	162, 669, 746
MvaI	CCWGG	1 cut(s)	636
MwoI	GCNNNNNNNGC	1 cut(s)	607
NlaIV	GGNNCC	3 cut(s)	226, 519, 733
NmuCI	GTSAC	1 cut(s)	326
NsiI	ATGCAT	2 cut(s)	363, 867
NspI	RCATGY	1 cut(s)	412
PagI	TCATGA	2 cut(s)	931, 946
PfeI	GAWTC	3 cut(s)	472, 855, 976
PflMI	CCANNNNNTGG	1 cut(s)	527
PleI	GAGTC	2 cut(s)	274, 781
PpsI	GAGTC	2 cut(s)	274, 781
Psp6I	CCWGG	1 cut(s)	634
PspGI	CCWGG	1 cut(s)	634
PspN4I	GGNNCC	3 cut(s)	226, 519, 733
PspPI	GGNCC	2 cut(s)	224, 731
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	2 cut(s)	460, 538
RsaNI	GTAC	2 cut(s)	459, 537
RseI	CAYNNNNRTG	2 cut(s)	413, 645
SaqAI	TTAA	1 cut(s)	1030
Sau96I	GGNCC	2 cut(s)	224, 731
SchI	GAGTC	2 cut(s)	274, 781
ScrFI	CCNGG	1 cut(s)	636
SduI	GDGCHC	2 cut(s)	443, 642
SetI	ASST	8 cut(s)	157, 205, 395, 558, 664, 712, 817, 914
SfaNI	GCATC	5 cut(s)	298, 341, 348, 556, 852
SfcI	CTRYAG	2 cut(s)	312, 816
SinI	GGWCC	2 cut(s)	224, 731
SmiMI	CAYNNNNRTG	2 cut(s)	413, 645
SmlI	CTYRAG	2 cut(s)	198, 705
SmoI	CTYRAG	2 cut(s)	198, 705
Sse9I	AATT	6 cut(s)	18, 101, 162, 502, 669, 746
SspMI	CTAG	4 cut(s)	23, 287, 476, 992
StyD4I	CCNGG	1 cut(s)	634
TaaI	ACNGT	6 cut(s)	332, 513, 541, 644, 836, 1024
TaqI	TCGA	1 cut(s)	961
TasI	AATT	6 cut(s)	18, 101, 162, 502, 669, 746
TatI	WGTACW	1 cut(s)	458
TfiI	GAWTC	3 cut(s)	472, 855, 976
Tru1I	TTAA	1 cut(s)	1030
Tru9I	TTAA	1 cut(s)	1030
TscAI	CASTG	2 cut(s)	120, 649
TseFI	GTSAC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	1 cut(s)	431
TspGWI	ACGGA	1 cut(s)	988
TspRI	CASTG	2 cut(s)	120, 649
Van91I	CCANNNNNTGG	1 cut(s)	527
VpaK11BI	GGWCC	2 cut(s)	224, 731
XapI	RAATTY	1 cut(s)	502
XbaI	TCTAGA	2 cut(s)	22, 475
XceI	RCATGY	1 cut(s)	412
XcmI	CCANNNNNNNNNTGG	2 cut(s)	218, 725
XspI	CTAG	4 cut(s)	23, 287, 476, 992
Zsp2I	ATGCAT	2 cut(s)	363, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.