Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004368

Physical Location & Seq

Genomic Coordinates Forward (+)

22805241 .. 22805705

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g24510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGATCGATCTATTAGGGCGTGCTGGACATTTACGTGAAGCATTTGAAACAATAAAGAGCATGCCATTCTCCCCAGATTCGGGTGTCTGGGGAACAATGCTTGGAGCCTGTCGGCTCCATGGCAATGTTGAGCTTGCAGAAGAGGTATCAAGATATCTTTTTGAATTGGCACCGCAAAATTCTGGCTATTATATACTCCTCTCAAATATACTTGCTGATGCTGGAAAATGGGGGAGCGTGCTGAAGGTTCGAACGCTAATGAAAAACAGAGAAGTTCAAAAGGTTCCTGGTTACAGTTGGATTGAGGTAAACAACAACACTCATATGTTTGTTGCAGCAGATGGGAGTCACCCCCAGTCTGCTCAGATATATTCATTGCTCAACAGTCTTCTTTTAGAACTAAGAAAAGAGGGTTATAATCCTAGACCTTACCTTCCAACACATCCACAGACATTGGGGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

155

Amino Acids

17.23

Weight (kDa)

6.97

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	40 - 102	6.3e-20	E motif
Eplus_motif	PF20430	107 - 133	6.5e-07	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46050
fragaria_vesca	FvH4_7g14820
malus_domestica	MD01G1066700.v1.1 MD11G1207600.v1.1
pyrus_communis	pycom01g09600 pycom01g22640 pycom17g24510
rosa_chinensis	RchiOBHm_Chr1g0356771 RchiOBHm_Chr1g0356781 RchiOBHm_Chr1g0375691 RchiOBHm_Chr2g0089631 RchiOBHm_Chr4g0418871
rosa_laevigata	RLG00000011901 RLG00000028084
rosa_multiflora	Rmu_co8104928.1_g000001 Rmu_co8368077.1_g000001 Rmu_sc0000517.1_g000030 Rmu_sc0000935.1_g000021 Rmu_sc0002219.1_g000014 Rmu_sc0005718.1_g000009
rosa_roxburghii	Rroxscaffold_4G00299370
rosa_rugosa	Rorug01G0251100
rosa_samantha	Rh1AG265300 Rh1AG265400 Rh1BG232700 Rh1BG232800 Rh1CG248800 Rh1CG248900 Rh1DG260300 Rh4BG214000 Rh6AG008500
rosa_wichuraiana	Rw4G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	417
AccB1I	GGYRCC	1 cut(s)	169
AciI	CCGC	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	178
AcuI	CTGAAG	1 cut(s)	263
AfiI	CCNNNNNNNGG	2 cut(s)	79, 80
AgsI	TTSAA	3 cut(s)	47, 164, 278
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
ApeKI	GCWGC	1 cut(s)	335
ApoI	RAATTY	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	341
AsuII	TTCGAA	1 cut(s)	250
BanI	GGYRCC	1 cut(s)	169
BbsI	GAAGAC	1 cut(s)	380
BbvI	GCAGC	1 cut(s)	347
BccI	CCATC	1 cut(s)	335
BciT130I	CCWGG	1 cut(s)	288
BfaI	CTAG	1 cut(s)	423
BisI	GCNGC	1 cut(s)	336
BlsI	GCNGC	1 cut(s)	337
Bme1390I	CCNGG	1 cut(s)	288
BmiI	GGNNCC	4 cut(s)	106, 116, 171, 285
BmrFI	CCNGG	1 cut(s)	288
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	1 cut(s)	208
BmuI	ACTGGG	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	380
Bpu14I	TTCGAA	1 cut(s)	250
Bsa29I	ATCGAT	1 cut(s)	6
BsaAI	YACGTR	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 80
Bse1I	ACTGG	1 cut(s)	355
Bse3DI	GCAATG	2 cut(s)	130, 374
BseBI	CCWGG	1 cut(s)	288
BseCI	ATCGAT	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	1 cut(s)	442
BseLI	CCNNNNNNNGG	2 cut(s)	79, 80
BseMI	GCAATG	2 cut(s)	130, 374
BseMII	CTCAG	1 cut(s)	377
BseNI	ACTGG	1 cut(s)	355
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	347
BshNI	GGYRCC	1 cut(s)	169
BshVI	ATCGAT	1 cut(s)	6
BslI	CCNNNNNNNGG	2 cut(s)	79, 80
Bsp119I	TTCGAA	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	3, 7
Bsp19I	CCATGG	1 cut(s)	118
BspACI	CCGC	1 cut(s)	173
BspCNI	CTCAG	1 cut(s)	376
BspDI	ATCGAT	1 cut(s)	6
BspLI	GGNNCC	4 cut(s)	106, 116, 171, 285
BspT104I	TTCGAA	1 cut(s)	250
BspT107I	GGYRCC	1 cut(s)	169
BsrDI	GCAATG	2 cut(s)	130, 374
BsrI	ACTGG	1 cut(s)	355
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	2 cut(s)	3, 7
BssT1I	CCWWGG	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	2 cut(s)	296, 386
Bst6I	CTCTTC	1 cut(s)	135
BstBAI	YACGTR	1 cut(s)	35
BstBI	TTCGAA	1 cut(s)	250
BstC8I	GCNNGC	4 cut(s)	21, 62, 135, 239
BstDEI	CTNAG	2 cut(s)	363, 401
BstDSI	CCRYGG	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	442
BstKTI	GATC	2 cut(s)	6, 10
BstMBI	GATC	2 cut(s)	3, 7
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	286
BstV1I	GCAGC	1 cut(s)	347
BstV2I	GAAGAC	1 cut(s)	380
Bsu15I	ATCGAT	1 cut(s)	6
BsuTUI	ATCGAT	1 cut(s)	6
BtgI	CCRYGG	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	442
Cac8I	GCNNGC	4 cut(s)	21, 62, 135, 239
ClaI	ATCGAT	1 cut(s)	6
CspCI	CAANNNNNGTGG	1 cut(s)	435
CviAII	CATG	2 cut(s)	61, 119
CviJI	RGCY	4 cut(s)	107, 115, 133, 186
CviKI_1	RGCY	4 cut(s)	107, 115, 133, 186
DdeI	CTNAG	2 cut(s)	363, 401
DpnI	GATC	2 cut(s)	5, 9
DpnII	GATC	2 cut(s)	3, 7
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	155
Eco57I	CTGAAG	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	286
EcoRV	GATATC	1 cut(s)	155
EcoT14I	CCWWGG	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	2 cut(s)	64, 122
FaiI	YATR	9 cut(s)	62, 120, 192, 194, 209, 324, 326, 370, 417
FatI	CATG	2 cut(s)	60, 118
FauNDI	CATATG	1 cut(s)	324
Fnu4HI	GCNGC	1 cut(s)	336
FokI	GGATG	1 cut(s)	429
Fsp4HI	GCNGC	1 cut(s)	336
FspBI	CTAG	1 cut(s)	423
GluI	GCNGC	1 cut(s)	336
Hin1II	CATG	2 cut(s)	64, 122
HinfI	GANTC	2 cut(s)	77, 346
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	1 cut(s)	366
Hpy188III	TCNNGA	1 cut(s)	150
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	2 cut(s)	238, 443
HpyCH4III	ACNGT	2 cut(s)	296, 386
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	2 cut(s)	137, 335
HpyF3I	CTNAG	2 cut(s)	363, 401
HpySE526I	ACGT	1 cut(s)	34
Hsp92II	CATG	2 cut(s)	64, 122
Kzo9I	GATC	2 cut(s)	3, 7
LmnI	GCTCC	3 cut(s)	104, 120, 234
LpnPI	CCDG	9 cut(s)	9, 73, 87, 121, 168, 207, 273, 300, 368
Lsp1109I	GCAGC	1 cut(s)	347
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	2 cut(s)	290, 347
MalI	GATC	2 cut(s)	5, 9
MboI	GATC	2 cut(s)	3, 7
MboII	GAAGA	2 cut(s)	152, 380
MluCI	AATT	2 cut(s)	164, 178
MlyI	GAGTC	1 cut(s)	355
MmeI	TCCRAC	2 cut(s)	278, 461
MnlI	CCTC	4 cut(s)	136, 209, 298, 403
MseI	TTAA	1 cut(s)	463
MslI	CAYNNNNRTG	3 cut(s)	33, 123, 323
MspR9I	CCNGG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	288
NcoI	CCATGG	1 cut(s)	118
NdeI	CATATG	1 cut(s)	324
NdeII	GATC	2 cut(s)	3, 7
NlaIII	CATG	2 cut(s)	64, 122
NlaIV	GGNNCC	4 cut(s)	106, 116, 171, 285
NmuCI	GTSAC	1 cut(s)	347
NspI	RCATGY	1 cut(s)	64
NspV	TTCGAA	1 cut(s)	250
PaeI	GCATGC	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	337
PleI	GAGTC	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	354
Ppu21I	YACGTR	1 cut(s)	35
PsiI	TTATAA	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	4 cut(s)	106, 116, 171, 285
RseI	CAYNNNNRTG	3 cut(s)	33, 123, 323
SaqAI	TTAA	1 cut(s)	463
SatI	GCNGC	1 cut(s)	336
Sau3AI	GATC	2 cut(s)	3, 7
SchI	GAGTC	1 cut(s)	355
ScrFI	CCNGG	1 cut(s)	288
SetI	ASST	8 cut(s)	37, 135, 147, 249, 285, 309, 430, 435
SfaNI	GCATC	1 cut(s)	208
SfuI	TTCGAA	1 cut(s)	250
SmiMI	CAYNNNNRTG	3 cut(s)	33, 123, 323
SphI	GCATGC	1 cut(s)	64
Sse9I	AATT	2 cut(s)	164, 178
SsiI	CCGC	1 cut(s)	173
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	2 cut(s)	296, 386
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	2 cut(s)	6, 250
TasI	AATT	2 cut(s)	164, 178
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	463
Tru9I	TTAA	1 cut(s)	463
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	1 cut(s)	335
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	2 cut(s)	275, 363
XapI	RAATTY	1 cut(s)	178
XceI	RCATGY	1 cut(s)	64
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.