Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0004368

Physical Location & Seq

Genomic Coordinates Forward (+)

41122254 .. 41123640

Gene Structure 1387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G018520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGTGGATCTCCTGGGTAGAGCTGGCCGAGTAGAAGATGCTGAGAAAATGATAAGAAGCATGCCCATGAAGGCTGATGTTGTGATATGGGGAACATTATTGGCTGCATGTACAACACATGGGAATCTAGAAATAGGAGAAATGGCTGAAAAAAATTTGAAACTGTTGGATCCATCTCATGGGGCAAGTACAGTTCTCATGTCCAACCTACTTGCAGATGCAGGGAAGTGGGAGGCAGCCTCTTTGGAAAGGCGAGTAATGCAGAGCCTAAGACTAACCAGATCACCAGGGCACAGTGATGTTGTTTGGAAGCTGACCAGGGACAAGAGAGATGGAAAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

114

Amino Acids

12.54

Weight (kDa)

8.89

Isoelectric Point (pI)

44.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	40 - 101	1.5e-08	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46050
fragaria_vesca	FvH4_7g14820
malus_domestica	MD01G1066700.v1.1 MD11G1207600.v1.1
pyrus_communis	pycom01g09600 pycom01g22640 pycom17g24510
rosa_chinensis	RchiOBHm_Chr1g0356771 RchiOBHm_Chr1g0356781 RchiOBHm_Chr1g0375691 RchiOBHm_Chr2g0089631 RchiOBHm_Chr4g0418871
rosa_laevigata	RLG00000011901 RLG00000028084
rosa_multiflora	Rmu_co8104928.1_g000001 Rmu_co8368077.1_g000001 Rmu_sc0000517.1_g000030 Rmu_sc0000935.1_g000021 Rmu_sc0002219.1_g000014 Rmu_sc0005718.1_g000009
rosa_roxburghii	Rroxscaffold_4G00299370
rosa_rugosa	Rorug01G0251100
rosa_samantha	Rh1AG265300 Rh1AG265400 Rh1BG232700 Rh1BG232800 Rh1CG248800 Rh1CG248900 Rh1DG260300 Rh4BG214000 Rh6AG008500
rosa_wichuraiana	Rw4G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	179
AclWI	GGATC	3 cut(s)	15, 164, 177
AcoI	YGGCCR	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	154
AfaI	GTAC	2 cut(s)	112, 190
AfiI	CCNNNNNNNGG	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	160
AjnI	CCWGG	3 cut(s)	12, 286, 317
AluBI	AGCT	2 cut(s)	23, 313
AluI	AGCT	2 cut(s)	23, 313
AlwI	GGATC	3 cut(s)	15, 164, 177
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	2 cut(s)	104, 236
ApoI	RAATTY	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	276
BaeGI	GKGCMC	1 cut(s)	294
BamHI	GGATCC	1 cut(s)	169
BbvI	GCAGC	2 cut(s)	91, 248
BccI	CCATC	2 cut(s)	181, 326
BciT130I	CCWGG	3 cut(s)	14, 288, 319
BfaI	CTAG	1 cut(s)	128
BisI	GCNGC	2 cut(s)	105, 237
BlsI	GCNGC	2 cut(s)	106, 238
Bme1390I	CCNGG	3 cut(s)	14, 288, 319
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	3 cut(s)	14, 288, 319
BmsI	GCATC	2 cut(s)	28, 208
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
BsaJI	CCNNGG	3 cut(s)	13, 287, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
BseBI	CCWGG	3 cut(s)	14, 288, 319
BseDI	CCNNGG	3 cut(s)	13, 287, 318
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMII	CTCAG	1 cut(s)	33
BseSI	GKGCMC	1 cut(s)	294
BseXI	GCAGC	2 cut(s)	91, 248
BshFI	GGCC	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	335
BsnI	GGCC	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp1407I	TGTACA	1 cut(s)	110
Bsp143I	GATC	3 cut(s)	7, 169, 281
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	171
BspPI	GGATC	3 cut(s)	15, 164, 177
BsrGI	TGTACA	1 cut(s)	110
BssECI	CCNNGG	3 cut(s)	13, 287, 318
BssMI	GATC	3 cut(s)	7, 169, 281
Bst2UI	CCWGG	3 cut(s)	14, 288, 319
Bst4CI	ACNGT	3 cut(s)	165, 193, 296
BstAUI	TGTACA	1 cut(s)	110
BstC8I	GCNNGC	2 cut(s)	25, 62
BstDEI	CTNAG	2 cut(s)	42, 269
BstKTI	GATC	3 cut(s)	10, 172, 284
BstMBI	GATC	3 cut(s)	7, 169, 281
BstMWI	GCNNNNNNNGC	1 cut(s)	259
BstNI	CCWGG	3 cut(s)	14, 288, 319
BstNSI	RCATGY	2 cut(s)	64, 111
BstSCI	CCNGG	3 cut(s)	12, 286, 317
BstSLI	GKGCMC	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	91, 248
BstX2I	RGATCY	2 cut(s)	7, 169
BstYI	RGATCY	2 cut(s)	7, 169
BsuRI	GGCC	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	301
Cac8I	GCNNGC	2 cut(s)	25, 62
Csp6I	GTAC	2 cut(s)	111, 189
CviAII	CATG	6 cut(s)	61, 67, 108, 119, 179, 199
CviJI	RGCY	8 cut(s)	23, 27, 74, 104, 146, 239, 267, 313
CviKI_1	RGCY	8 cut(s)	23, 27, 74, 104, 146, 239, 267, 313
CviQI	GTAC	2 cut(s)	111, 189
DdeI	CTNAG	2 cut(s)	42, 269
DpnI	GATC	3 cut(s)	9, 171, 283
DpnII	GATC	3 cut(s)	7, 169, 281
EaeI	YGGCCR	1 cut(s)	25
EcoRII	CCWGG	3 cut(s)	12, 286, 317
FaeI	CATG	6 cut(s)	64, 70, 111, 122, 182, 202
FaiI	YATR	7 cut(s)	62, 68, 88, 109, 120, 180, 200
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	6 cut(s)	60, 66, 107, 118, 178, 198
Fnu4HI	GCNGC	2 cut(s)	105, 237
Fsp4HI	GCNGC	2 cut(s)	105, 237
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	2 cut(s)	105, 237
HaeIII	GGCC	1 cut(s)	27
Hin1II	CATG	6 cut(s)	64, 70, 111, 122, 182, 202
HinfI	GANTC	1 cut(s)	124
HphI	GGTGA	1 cut(s)	276
Hpy188III	TCNNGA	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	3 cut(s)	165, 193, 296
HpyCH4V	TGCA	4 cut(s)	107, 215, 221, 262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	259
HpyF3I	CTNAG	2 cut(s)	42, 269
Hsp92II	CATG	6 cut(s)	64, 70, 111, 122, 182, 202
Kzo9I	GATC	3 cut(s)	7, 169, 281
LpnPI	CCDG	8 cut(s)	9, 26, 207, 273, 292, 300, 304, 331
Lsp1109I	GCAGC	2 cut(s)	91, 248
LweI	GCATC	2 cut(s)	28, 208
MaeI	CTAG	1 cut(s)	128
MalI	GATC	3 cut(s)	9, 171, 283
MboI	GATC	3 cut(s)	7, 169, 281
MboII	GAAGA	1 cut(s)	47
MflI	RGATCY	2 cut(s)	7, 169
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	1 cut(s)	154
MmeI	TCCRAC	2 cut(s)	147, 228
MnlI	CCTC	2 cut(s)	226, 250
MseI	TTAA	1 cut(s)	343
MslI	CAYNNNNRTG	2 cut(s)	65, 297
MspR9I	CCNGG	3 cut(s)	14, 288, 319
MvaI	CCWGG	3 cut(s)	14, 288, 319
MwoI	GCNNNNNNNGC	1 cut(s)	259
NdeII	GATC	3 cut(s)	7, 169, 281
NlaIII	CATG	6 cut(s)	64, 70, 111, 122, 182, 202
NlaIV	GGNNCC	1 cut(s)	171
NmeAIII	GCCGAG	1 cut(s)	53
NspI	RCATGY	2 cut(s)	64, 111
PaeI	GCATGC	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	124
PflMI	CCANNNNNTGG	1 cut(s)	179
PkrI	GCNGC	2 cut(s)	106, 238
Psp6I	CCWGG	3 cut(s)	12, 286, 317
PspGI	CCWGG	3 cut(s)	12, 286, 317
PspN4I	GGNNCC	1 cut(s)	171
PsuI	RGATCY	2 cut(s)	7, 169
RsaI	GTAC	2 cut(s)	112, 190
RsaNI	GTAC	2 cut(s)	111, 189
RseI	CAYNNNNRTG	2 cut(s)	65, 297
SaqAI	TTAA	1 cut(s)	343
SatI	GCNGC	2 cut(s)	105, 237
Sau3AI	GATC	3 cut(s)	7, 169, 281
ScrFI	CCNGG	3 cut(s)	14, 288, 319
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	3 cut(s)	25, 210, 315
SfaNI	GCATC	2 cut(s)	28, 208
SmiMI	CAYNNNNRTG	2 cut(s)	65, 297
SphI	GCATGC	1 cut(s)	64
Sse9I	AATT	1 cut(s)	154
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	3 cut(s)	12, 286, 317
TaaI	ACNGT	3 cut(s)	165, 193, 296
TasI	AATT	1 cut(s)	154
TatI	WGTACW	2 cut(s)	110, 188
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	1 cut(s)	343
Tru9I	TTAA	1 cut(s)	343
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	2 cut(s)	104, 236
TspDTI	ATGAA	1 cut(s)	83
TspRI	CASTG	1 cut(s)	301
Van91I	CCANNNNNTGG	1 cut(s)	179
XapI	RAATTY	1 cut(s)	154
XbaI	TCTAGA	1 cut(s)	127
XceI	RCATGY	2 cut(s)	64, 111
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.