RLG00000011901

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004368
Physical Location & Seq
Reverse (-)
13639556 .. 13640045
490 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011901

Sequence Viewer

Length: 372 bp
ATGGGGAAATGGAGTGAAGTAAGACGTGTGAGAGATGTTATATATATGGAGGAAAGAGGGATCAAGAAAGTTCCCGGCTGTAGTTTGGTCGAGGTGGGAGGTGACATTCACGAATTTTTCGCGGGGGATGATTCTCACCCAGAAACTCGAGAGATATGCATGATGGTCGATGAGATCATGAAGAGACTAAAGATGAGAGACGAGTCCTGGCACCCCAATTCGAATAGTAAAAAACCTGAGCATAAGCTGCGATTGTCACGATGCCATGAAGTTGATTTCCCAGGAGTTCGATCGAGAAATTGTCATCCGAGATTGCAGCCCATTTTAGGGAAGGTCGACTATGCTCTTGCAAAGACTATTGGTATATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003008 GO:0003674 GO:0005215 GO:0005432 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005856 GO:0005874 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0007204 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007584 GO:0007610 GO:0007611 GO:0007612 GO:0007613 GO:0008150 GO:0008324 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0015075 GO:0015077 GO:0015081 GO:0015085 GO:0015291 GO:0015297 GO:0015298 GO:0015318 GO:0015368 GO:0015491 GO:0015630 GO:0015672 GO:0016020 GO:0016021 GO:0019725 GO:0021537 GO:0022804 GO:0022857 GO:0022890 GO:0023051 GO:0023056 GO:0030001 GO:0030003 GO:0030425 GO:0030900 GO:0031224 GO:0031226 GO:0031667 GO:0032501 GO:0032502 GO:0033273 GO:0033280 GO:0033993 GO:0034220 GO:0035725 GO:0036477 GO:0042221 GO:0042592 GO:0042995 GO:0043005 GO:0043025 GO:0043197 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044297 GO:0044309 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044456 GO:0044459 GO:0044463 GO:0044464 GO:0045202 GO:0046873 GO:0048167 GO:0048168 GO:0048172 GO:0048513 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050804 GO:0050806 GO:0050877 GO:0050890 GO:0050896 GO:0051179 GO:0051234 GO:0051480 GO:0051641 GO:0051649 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0060291 GO:0060322 GO:0060401 GO:0060402 GO:0065007 GO:0065008 GO:0070509 GO:0070588 GO:0070838 GO:0071944 GO:0072503 GO:0072507 GO:0072511 GO:0097447 GO:0097458 GO:0097553 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098703 GO:0098739 GO:0098771 GO:0098794 GO:0099080 GO:0099081 GO:0099177 GO:0099512 GO:0099513 GO:0099516 GO:0099587 GO:0120025 GO:0120038 GO:1901660 GO:1901700 GO:1902656 GO:1990034
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_Ca_ex

Protein Analysis

124

Amino Acids

14.26

Weight (kDa)

8.73

Isoelectric Point (pI)

56.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Eplus_motif PF20430 36 - 63 1.4e-07 E+ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 370
AccB1I GGYRCC 1 cut(s) 210
AccI GTMKAC 1 cut(s) 336
AccII CGCG 1 cut(s) 122
AciI CCGC 1 cut(s) 122
AclWI GGATC 1 cut(s) 68
AcsI RAATTY 1 cut(s) 113
AfiI CCNNNNNNNGG 2 cut(s) 326, 327
AflIII ACRYGT 1 cut(s) 25
AjiI CACGTC 1 cut(s) 26
AjnI CCWGG 2 cut(s) 206, 280
AluBI AGCT 1 cut(s) 247
AluI AGCT 1 cut(s) 247
Alw26I GTCTC 2 cut(s) 178, 192
AlwI GGATC 1 cut(s) 68
Ama87I CYCGRG 1 cut(s) 147
ApeKI GCWGC 2 cut(s) 247, 316
ApoI RAATTY 1 cut(s) 113
AsuC2I CCSGG 1 cut(s) 75
AsuHPI GGTGA 2 cut(s) 113, 128
AsuII TTCGAA 1 cut(s) 221
AvaI CYCGRG 1 cut(s) 147
BanI GGYRCC 1 cut(s) 210
BbvI GCAGC 2 cut(s) 234, 328
BccI CCATC 1 cut(s) 157
BcgI CGANNNNNNTGC 4 cut(s) 138, 148, 172, 182
BciT130I CCWGG 2 cut(s) 208, 282
BcnI CCSGG 1 cut(s) 75
BcoDI GTCTC 2 cut(s) 178, 192
BfmI CTRYAG 1 cut(s) 79
BisI GCNGC 2 cut(s) 248, 317
BlsI GCNGC 2 cut(s) 249, 318
Bme1390I CCNGG 3 cut(s) 75, 208, 282
BmeT110I CYCGRG 1 cut(s) 147
BmgBI CACGTC 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 212
BmrFI CCNGG 3 cut(s) 75, 208, 282
BmsI GCATC 1 cut(s) 251
Bpu10I CCTNAGC 1 cut(s) 237
Bpu14I TTCGAA 1 cut(s) 221
BpuMI CCSGG 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 280
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 327
BseBI CCWGG 2 cut(s) 208, 282
BseDI CCNNGG 1 cut(s) 280
BseGI GGATG 2 cut(s) 133, 304
BseLI CCNNNNNNNGG 2 cut(s) 326, 327
BseMII CTCAG 1 cut(s) 228
BseXI GCAGC 2 cut(s) 234, 328
Bsh1236I CGCG 1 cut(s) 122
Bsh1285I CGRYCG 1 cut(s) 293
BshNI GGYRCC 1 cut(s) 210
BsiEI CGRYCG 1 cut(s) 293
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 1 cut(s) 75
BslI CCNNNNNNNGG 2 cut(s) 326, 327
BsmAI GTCTC 2 cut(s) 178, 192
BsmBI CGTCTC 1 cut(s) 192
BsoBI CYCGRG 1 cut(s) 147
Bsp119I TTCGAA 1 cut(s) 221
Bsp143I GATC 3 cut(s) 60, 174, 290
BspACI CCGC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 229
BspFNI CGCG 1 cut(s) 122
BspHI TCATGA 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 212
BspPI GGATC 1 cut(s) 68
BspT104I TTCGAA 1 cut(s) 221
BspT107I GGYRCC 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 280
BssMI GATC 3 cut(s) 60, 174, 290
Bst2UI CCWGG 2 cut(s) 208, 282
Bst6I CTCTTC 1 cut(s) 176
BstAPI GCANNNNNTGC 1 cut(s) 247
BstBI TTCGAA 1 cut(s) 221
BstDEI CTNAG 1 cut(s) 237
BstF5I GGATG 2 cut(s) 133, 304
BstFNI CGCG 1 cut(s) 122
BstKTI GATC 3 cut(s) 63, 177, 293
BstMAI GTCTC 2 cut(s) 178, 192
BstMBI GATC 3 cut(s) 60, 174, 290
BstMCI CGRYCG 1 cut(s) 293
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstNI CCWGG 2 cut(s) 208, 282
BstSCI CCNGG 3 cut(s) 73, 206, 280
BstSFI CTRYAG 1 cut(s) 79
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 2 cut(s) 234, 328
BtrI CACGTC 1 cut(s) 26
BtsCI GGATG 2 cut(s) 133, 304
CciI TCATGA 1 cut(s) 177
CviAII CATG 3 cut(s) 160, 178, 266
CviJI RGCY 3 cut(s) 78, 247, 319
CviKI_1 RGCY 3 cut(s) 78, 247, 319
DdeI CTNAG 1 cut(s) 237
DpnI GATC 3 cut(s) 62, 176, 292
DpnII GATC 3 cut(s) 60, 174, 290
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Eco88I CYCGRG 1 cut(s) 147
EcoRII CCWGG 2 cut(s) 206, 280
EcoT22I ATGCAT 1 cut(s) 161
Esp3I CGTCTC 1 cut(s) 192
FaeI CATG 3 cut(s) 163, 181, 269
FatI CATG 3 cut(s) 159, 177, 265
FauI CCCGC 1 cut(s) 115
FblI GTMKAC 1 cut(s) 336
Fnu4HI GCNGC 2 cut(s) 248, 317
FokI GGATG 2 cut(s) 140, 291
Fsp4HI GCNGC 2 cut(s) 248, 317
GluI GCNGC 2 cut(s) 248, 317
HapII CCGG 1 cut(s) 75
Hin1II CATG 3 cut(s) 163, 181, 269
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HinfI GANTC 2 cut(s) 131, 203
HpaII CCGG 1 cut(s) 75
HphI GGTGA 2 cut(s) 113, 128
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 1 cut(s) 309
Hpy188III TCNNGA 6 cut(s) 64, 110, 149, 178, 258, 294
Hpy8I GTNNAC 1 cut(s) 337
HpyAV CCTTC 1 cut(s) 325
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 3 cut(s) 159, 316, 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
HpyF3I CTNAG 1 cut(s) 237
HpySE526I ACGT 1 cut(s) 25
Hsp92II CATG 3 cut(s) 163, 181, 269
Kzo9I GATC 3 cut(s) 60, 174, 290
LpnPI CCDG 7 cut(s) 88, 153, 193, 220, 249, 267, 294
Lsp1109I GCAGC 2 cut(s) 234, 328
LweI GCATC 1 cut(s) 251
MaeII ACGT 1 cut(s) 25
MaeIII GTNAC 2 cut(s) 101, 255
MalI GATC 3 cut(s) 62, 176, 292
MboI GATC 3 cut(s) 60, 174, 290
MboII GAAGA 1 cut(s) 193
MluCI AATT 3 cut(s) 113, 217, 298
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 4 cut(s) 43, 50, 85, 92
Mph1103I ATGCAT 1 cut(s) 161
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 3 cut(s) 75, 208, 282
MvaI CCWGG 2 cut(s) 208, 282
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 1 cut(s) 247
NciI CCSGG 1 cut(s) 75
NdeII GATC 3 cut(s) 60, 174, 290
NlaIII CATG 3 cut(s) 163, 181, 269
NlaIV GGNNCC 1 cut(s) 212
NmuCI GTSAC 2 cut(s) 101, 255
NsiI ATGCAT 1 cut(s) 161
NspV TTCGAA 1 cut(s) 221
PaeR7I CTCGAG 1 cut(s) 147
PagI TCATGA 1 cut(s) 177
PfeI GAWTC 1 cut(s) 131
PkrI GCNGC 2 cut(s) 249, 318
Ple19I CGATCG 1 cut(s) 293
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PsiI TTATAA 1 cut(s) 370
Psp6I CCWGG 2 cut(s) 206, 280
PspGI CCWGG 2 cut(s) 206, 280
PspN4I GGNNCC 1 cut(s) 212
PvuI CGATCG 1 cut(s) 293
SalI GTCGAC 1 cut(s) 335
SatI GCNGC 2 cut(s) 248, 317
Sau3AI GATC 3 cut(s) 60, 174, 290
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 3 cut(s) 75, 208, 282
SetI ASST 6 cut(s) 28, 96, 103, 238, 249, 336
SfaNI GCATC 1 cut(s) 251
SfcI CTRYAG 1 cut(s) 79
Sfr274I CTCGAG 1 cut(s) 147
SfuI TTCGAA 1 cut(s) 221
SlaI CTCGAG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 147
SmoI CTYRAG 1 cut(s) 147
Sse9I AATT 3 cut(s) 113, 217, 298
SsiI CCGC 1 cut(s) 122
StyD4I CCNGG 3 cut(s) 73, 206, 280
TaiI ACGT 1 cut(s) 28
TaqI TCGA 7 cut(s) 90, 148, 168, 221, 289, 293, 336
TasI AATT 3 cut(s) 113, 217, 298
TfiI GAWTC 1 cut(s) 131
TseFI GTSAC 2 cut(s) 101, 255
TseI GCWGC 2 cut(s) 247, 316
Tsp45I GTSAC 2 cut(s) 101, 255
TspDTI ATGAA 2 cut(s) 194, 282
XapI RAATTY 1 cut(s) 113
XhoI CTCGAG 1 cut(s) 147
XmiI GTMKAC 1 cut(s) 336
Zsp2I ATGCAT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.