Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004368

Physical Location & Seq

Genomic Coordinates Forward (+)

44320582 .. 44326074

Gene Structure 5493 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38881

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGAAAAATGTATACCACATTCAACCAAACATTAAGCATTATGGTTGTATGGTGGATCTCCTGGGTAGAGCTGGCCGAGTAGAAGATGCTGAGAAAATGATAAGAAGCATGCCCATGAAGGCTGATGTTGTGATATGGGGCACATTGTTGGCCGCATGTACAACACATGGGAATCTAGAAATAGGAGAAATGGCTGAAAAGAATTTGACACTGTTGGATCCATCTCATGGGGCAAGTACAGTTCTCATGCCCAACCTACTTGTAGATGCAGGGAAGTGGGAGGAAGCCTCTTTGGAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

100

Amino Acids

11.05

Weight (kDa)

5.73

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	7 - 37	1e-05	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46050
fragaria_vesca	FvH4_7g14820
malus_domestica	MD01G1066700.v1.1 MD11G1207600.v1.1
pyrus_communis	pycom01g09600 pycom01g22640 pycom17g24510
rosa_chinensis	RchiOBHm_Chr1g0356771 RchiOBHm_Chr1g0356781 RchiOBHm_Chr1g0375691 RchiOBHm_Chr2g0089631 RchiOBHm_Chr4g0418871
rosa_laevigata	RLG00000011901 RLG00000028084
rosa_multiflora	Rmu_co8104928.1_g000001 Rmu_co8368077.1_g000001 Rmu_sc0000517.1_g000030 Rmu_sc0000935.1_g000021 Rmu_sc0002219.1_g000014 Rmu_sc0005718.1_g000009
rosa_roxburghii	Rroxscaffold_4G00299370
rosa_rugosa	Rorug01G0251100
rosa_samantha	Rh1AG265300 Rh1AG265400 Rh1BG232700 Rh1BG232800 Rh1CG248800 Rh1CG248900 Rh1DG260300 Rh4BG214000 Rh6AG008500
rosa_wichuraiana	Rw4G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	12
AciI	CCGC	1 cut(s)	153
AclWI	GGATC	3 cut(s)	63, 212, 225
AcoI	YGGCCR	2 cut(s)	73, 150
AcsI	RAATTY	1 cut(s)	202
AfaI	GTAC	2 cut(s)	160, 238
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
AlwI	GGATC	3 cut(s)	63, 212, 225
AoxI	GGCC	2 cut(s)	73, 150
ApoI	RAATTY	1 cut(s)	202
BaeGI	GKGCMC	1 cut(s)	143
BamHI	GGATCC	1 cut(s)	217
BccI	CCATC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	62
BfaI	CTAG	1 cut(s)	176
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
Bme1390I	CCNGG	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	62
BmsI	GCATC	2 cut(s)	76, 256
BplI	GAGNNNNNCTC	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMII	CTCAG	1 cut(s)	81
BseSI	GKGCMC	1 cut(s)	143
BshFI	GGCC	2 cut(s)	75, 152
BslI	CCNNNNNNNGG	1 cut(s)	227
BsnI	GGCC	2 cut(s)	75, 152
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp1407I	TGTACA	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	55, 217
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	2 cut(s)	75, 152
BspCNI	CTCAG	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	3 cut(s)	63, 212, 225
BsrGI	TGTACA	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	2 cut(s)	55, 217
BssNAI	GTATAC	1 cut(s)	13
Bst1107I	GTATAC	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	2 cut(s)	213, 241
BstAUI	TGTACA	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	73, 110
BstDEI	CTNAG	1 cut(s)	90
BstKTI	GATC	2 cut(s)	58, 220
BstMBI	GATC	2 cut(s)	55, 217
BstNI	CCWGG	1 cut(s)	62
BstNSI	RCATGY	2 cut(s)	112, 159
BstSCI	CCNGG	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	143
BstX2I	RGATCY	2 cut(s)	55, 217
BstYI	RGATCY	2 cut(s)	55, 217
BstZ17I	GTATAC	1 cut(s)	13
BsuRI	GGCC	2 cut(s)	75, 152
BtsIMutI	CAGTG	1 cut(s)	209
Cac8I	GCNNGC	2 cut(s)	73, 110
Csp6I	GTAC	2 cut(s)	159, 237
CviAII	CATG	6 cut(s)	109, 115, 156, 167, 227, 247
CviJI	RGCY	6 cut(s)	71, 75, 122, 152, 194, 287
CviKI_1	RGCY	6 cut(s)	71, 75, 122, 152, 194, 287
CviQI	GTAC	2 cut(s)	159, 237
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	2 cut(s)	57, 219
DpnII	GATC	2 cut(s)	55, 217
EaeI	YGGCCR	2 cut(s)	73, 150
EcoRII	CCWGG	1 cut(s)	60
FaeI	CATG	6 cut(s)	112, 118, 159, 170, 230, 250
FatI	CATG	6 cut(s)	108, 114, 155, 166, 226, 246
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	153
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	1 cut(s)	153
HaeIII	GGCC	2 cut(s)	75, 152
Hin1II	CATG	6 cut(s)	112, 118, 159, 170, 230, 250
HinfI	GANTC	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188III	TCNNGA	1 cut(s)	176
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	2 cut(s)	213, 241
HpyCH4V	TGCA	1 cut(s)	269
HpyF3I	CTNAG	1 cut(s)	90
Hsp92II	CATG	6 cut(s)	112, 118, 159, 170, 230, 250
Kzo9I	GATC	2 cut(s)	55, 217
LpnPI	CCDG	4 cut(s)	47, 57, 74, 255
LweI	GCATC	2 cut(s)	76, 256
MaeI	CTAG	1 cut(s)	176
MalI	GATC	2 cut(s)	57, 219
MboI	GATC	2 cut(s)	55, 217
MboII	GAAGA	1 cut(s)	95
MflI	RGATCY	2 cut(s)	55, 217
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	1 cut(s)	202
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	2 cut(s)	274, 298
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	62
NdeII	GATC	2 cut(s)	55, 217
NlaIII	CATG	6 cut(s)	112, 118, 159, 170, 230, 250
NlaIV	GGNNCC	1 cut(s)	219
NmeAIII	GCCGAG	1 cut(s)	101
NspI	RCATGY	2 cut(s)	112, 159
PaeI	GCATGC	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	172
PflMI	CCANNNNNTGG	1 cut(s)	227
PkrI	GCNGC	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	219
PsuI	RGATCY	2 cut(s)	55, 217
RsaI	GTAC	2 cut(s)	160, 238
RsaNI	GTAC	2 cut(s)	159, 237
RseI	CAYNNNNRTG	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	2 cut(s)	55, 217
ScrFI	CCNGG	1 cut(s)	62
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	3 cut(s)	73, 258, 302
SfaNI	GCATC	2 cut(s)	76, 256
SmiMI	CAYNNNNRTG	1 cut(s)	113
SphI	GCATGC	1 cut(s)	112
Sse9I	AATT	1 cut(s)	202
SsiI	CCGC	1 cut(s)	153
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	1 cut(s)	60
TaaI	ACNGT	2 cut(s)	213, 241
TasI	AATT	1 cut(s)	202
TatI	WGTACW	2 cut(s)	158, 236
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	1 cut(s)	216
TspDTI	ATGAA	2 cut(s)	17, 131
TspRI	CASTG	1 cut(s)	216
Van91I	CCANNNNNTGG	1 cut(s)	227
XapI	RAATTY	1 cut(s)	202
XbaI	TCTAGA	1 cut(s)	175
XceI	RCATGY	2 cut(s)	112, 159
XmiI	GTMKAC	1 cut(s)	12
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.