Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004368

Physical Location & Seq

Genomic Coordinates Reverse (-)

30246710 .. 30248001

Gene Structure 1292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1207600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGTTGGCCAATATATATGGGCAGTTGGGGAAGTGGGATGATGTCCGAAACGTGAGAAAGATGCTGAGGGAGCGAAATGCTTATAAAACCCCAGGTTGCAGTTGGATTGAGGTTGATAATCAAGTTTACCAATTTTATTCAATTGACAAATCACATCCTAGAACGGAAGAGATCTACCAAATCCTAGACATTCTCCTCTTATTTCTTCCCGACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

73

Amino Acids

8.63

Weight (kDa)

5.67

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	1 - 37	1.9e-11	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46050
fragaria_vesca	FvH4_7g14820
malus_domestica	MD01G1066700.v1.1 MD11G1207600.v1.1
pyrus_communis	pycom01g09600 pycom01g22640 pycom17g24510
rosa_chinensis	RchiOBHm_Chr1g0356771 RchiOBHm_Chr1g0356781 RchiOBHm_Chr1g0375691 RchiOBHm_Chr2g0089631 RchiOBHm_Chr4g0418871
rosa_laevigata	RLG00000011901 RLG00000028084
rosa_multiflora	Rmu_co8104928.1_g000001 Rmu_co8368077.1_g000001 Rmu_sc0000517.1_g000030 Rmu_sc0000935.1_g000021 Rmu_sc0002219.1_g000014 Rmu_sc0005718.1_g000009
rosa_roxburghii	Rroxscaffold_4G00299370
rosa_rugosa	Rorug01G0251100
rosa_samantha	Rh1AG265300 Rh1AG265400 Rh1BG232700 Rh1BG232800 Rh1CG248800 Rh1CG248900 Rh1DG260300 Rh4BG214000 Rh6AG008500
rosa_wichuraiana	Rw4G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	84
AcoI	YGGCCR	1 cut(s)	6
AgsI	TTSAA	1 cut(s)	141
AjnI	CCWGG	1 cut(s)	91
AoxI	GGCC	1 cut(s)	6
BalI	TGGCCA	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	93
BfaI	CTAG	2 cut(s)	159, 185
BglII	AGATCT	1 cut(s)	171
Bme1390I	CCNGG	1 cut(s)	93
BmrFI	CCNGG	1 cut(s)	93
BmsI	GCATC	1 cut(s)	51
Bpu10I	CCTNAGC	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	91
BseBI	CCWGG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	2 cut(s)	43, 154
BseMII	CTCAG	1 cut(s)	56
BseRI	GAGGAG	1 cut(s)	185
BshFI	GGCC	1 cut(s)	8
BsnI	GGCC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	171
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	57
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	93
Bst6I	CTCTTC	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	43, 154
BstKTI	GATC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	171
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNI	CCWGG	1 cut(s)	93
BstSCI	CCNGG	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	8
BtsCI	GGATG	2 cut(s)	43, 154
CviJI	RGCY	1 cut(s)	8
CviKI_1	RGCY	1 cut(s)	8
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	91
FaiI	YATR	6 cut(s)	14, 16, 18, 84, 215, 217
FauNDI	CATATG	1 cut(s)	215
FokI	GGATG	2 cut(s)	50, 141
FspBI	CTAG	2 cut(s)	159, 185
HaeIII	GGCC	1 cut(s)	8
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	47
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	1 cut(s)	99
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	1 cut(s)	65
HpySE526I	ACGT	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	171
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	2 cut(s)	78, 105
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	2 cut(s)	159, 185
MaeII	ACGT	1 cut(s)	51
MalI	GATC	1 cut(s)	173
MboI	GATC	1 cut(s)	171
MboII	GAAGA	2 cut(s)	179, 197
MfeI	CAATTG	1 cut(s)	141
MflI	RGATCY	1 cut(s)	171
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	2 cut(s)	131, 141
MluNI	TGGCCA	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	83
MnlI	CCTC	3 cut(s)	60, 103, 206
Mox20I	TGGCCA	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	8
Msp20I	TGGCCA	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	93
MunI	CAATTG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	70
NdeI	CATATG	1 cut(s)	215
NdeII	GATC	1 cut(s)	171
PsiI	TTATAA	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	171
Sau3AI	GATC	1 cut(s)	171
ScrFI	CCNGG	1 cut(s)	93
SetI	ASST	3 cut(s)	54, 97, 114
SfaNI	GCATC	1 cut(s)	51
SgeI	CNNG	6 cut(s)	64, 104, 105, 134, 171, 197
Sse9I	AATT	2 cut(s)	131, 141
SspMI	CTAG	2 cut(s)	159, 185
StyD4I	CCNGG	1 cut(s)	91
TaiI	ACGT	1 cut(s)	54
TasI	AATT	2 cut(s)	131, 141
TspGWI	ACGGA	1 cut(s)	179
XcmI	CCANNNNNNNNNTGG	1 cut(s)	99
XspI	CTAG	2 cut(s)	159, 185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.