Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004368

Physical Location & Seq

Genomic Coordinates Reverse (-)

19281814 .. 19283332

Gene Structure 1519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00299370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGTCTAACATCTATTCTACTGAAGGTCATTGGGCTGATGTTGCAAGGGTACGCCAAATGATGAGGTACAGTTGTGATCAGAAAGCTCCAGGTTGTAGCTGGCTGGAGATAGGCGGCGACATTCATATGTGTGTATCAGGTGATGAGTCCCACCCAGAAGCATCACAGGTGTATGTTATGCTAGGGATGTTGCTCAGGGTGATGAAGGAGACTGGAGAAGAATTATATGTAGGATCAGTGATTAAGTTAGATACAGTTCTGGATGAATCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

91

Amino Acids

10.14

Weight (kDa)

4.68

Isoelectric Point (pI)

37.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	1 - 36	8e-12	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46050
fragaria_vesca	FvH4_7g14820
malus_domestica	MD01G1066700.v1.1 MD11G1207600.v1.1
pyrus_communis	pycom01g09600 pycom01g22640 pycom17g24510
rosa_chinensis	RchiOBHm_Chr1g0356771 RchiOBHm_Chr1g0356781 RchiOBHm_Chr1g0375691 RchiOBHm_Chr2g0089631 RchiOBHm_Chr4g0418871
rosa_laevigata	RLG00000011901 RLG00000028084
rosa_multiflora	Rmu_co8104928.1_g000001 Rmu_co8368077.1_g000001 Rmu_sc0000517.1_g000030 Rmu_sc0000935.1_g000021 Rmu_sc0002219.1_g000014 Rmu_sc0005718.1_g000009
rosa_roxburghii	Rroxscaffold_4G00299370
rosa_rugosa	Rorug01G0251100
rosa_samantha	Rh1AG265300 Rh1AG265400 Rh1BG232700 Rh1BG232800 Rh1CG248800 Rh1CG248900 Rh1DG260300 Rh4BG214000 Rh6AG008500
rosa_wichuraiana	Rw4G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	114
AclWI	GGATC	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	42
AfaI	GTAC	2 cut(s)	51, 68
AjnI	CCWGG	1 cut(s)	88
AluBI	AGCT	2 cut(s)	86, 99
AluI	AGCT	2 cut(s)	86, 99
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	241
AsuHPI	GGTGA	2 cut(s)	152, 211
BaeI	ACNNNNGTAYC	2 cut(s)	58, 91
BciT130I	CCWGG	1 cut(s)	90
BclI	TGATCA	1 cut(s)	76
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	182
BisI	GCNGC	1 cut(s)	115
BlsI	GCNGC	1 cut(s)	116
Bme1390I	CCNGG	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	1 cut(s)	170
BpmI	CTGGAG	3 cut(s)	72, 125, 234
Bpu10I	CCTNAGC	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	217
BseBI	CCWGG	1 cut(s)	90
BseGI	GGATG	2 cut(s)	192, 268
BseMII	CTCAG	1 cut(s)	208
BseNI	ACTGG	1 cut(s)	217
BslFI	GGGAC	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	133
Bsp143I	GATC	2 cut(s)	76, 233
BspACI	CCGC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	207
BspPI	GGATC	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	217
BssMI	GATC	2 cut(s)	76, 233
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	2 cut(s)	71, 256
BstC8I	GCNNGC	1 cut(s)	101
BstDEI	CTNAG	1 cut(s)	194
BstF5I	GGATG	2 cut(s)	192, 268
BstKTI	GATC	2 cut(s)	79, 236
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	2 cut(s)	76, 233
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	192, 268
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	101
Csp6I	GTAC	2 cut(s)	50, 67
CviJI	RGCY	4 cut(s)	35, 86, 99, 103
CviKI_1	RGCY	4 cut(s)	35, 86, 99, 103
CviQI	GTAC	2 cut(s)	50, 67
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	2 cut(s)	78, 235
DpnII	GATC	2 cut(s)	76, 233
Eco57I	CTGAAG	1 cut(s)	42
EcoRII	CCWGG	1 cut(s)	88
FaiI	YATR	6 cut(s)	126, 128, 174, 179, 226, 228
FaqI	GGGAC	1 cut(s)	133
FauNDI	CATATG	1 cut(s)	126
FbaI	TGATCA	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	115
FokI	GGATG	1 cut(s)	199
Fsp4HI	GCNGC	1 cut(s)	115
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	1 cut(s)	115
GsuI	CTGGAG	3 cut(s)	72, 125, 234
HinfI	GANTC	2 cut(s)	146, 266
HphI	GGTGA	2 cut(s)	152, 211
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	1 cut(s)	260
HpyAV	CCTTC	2 cut(s)	17, 199
HpyCH4III	ACNGT	2 cut(s)	71, 256
HpyCH4V	TGCA	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	1 cut(s)	194
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	76, 233
LmnI	GCTCC	1 cut(s)	91
LweI	GCATC	1 cut(s)	170
MaeI	CTAG	1 cut(s)	182
MalI	GATC	2 cut(s)	78, 235
MboI	GATC	2 cut(s)	76, 233
MboII	GAAGA	1 cut(s)	230
MluCI	AATT	1 cut(s)	221
MlyI	GAGTC	1 cut(s)	155
MnlI	CCTC	1 cut(s)	57
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	2 cut(s)	125, 129
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	41
NdeI	CATATG	1 cut(s)	126
NdeII	GATC	2 cut(s)	76, 233
PfeI	GAWTC	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	116
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
RsaI	GTAC	2 cut(s)	51, 68
RsaNI	GTAC	2 cut(s)	50, 67
RseI	CAYNNNNRTG	2 cut(s)	125, 129
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	1 cut(s)	115
Sau3AI	GATC	2 cut(s)	76, 233
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	1 cut(s)	90
SetI	ASST	7 cut(s)	28, 68, 88, 94, 101, 142, 171
SfaNI	GCATC	1 cut(s)	170
SmiMI	CAYNNNNRTG	2 cut(s)	125, 129
Sse9I	AATT	1 cut(s)	221
SsiI	CCGC	1 cut(s)	114
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	1 cut(s)	88
TaaI	ACNGT	2 cut(s)	71, 256
TasI	AATT	1 cut(s)	221
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	243
TspDTI	ATGAA	2 cut(s)	113, 218
TspRI	CASTG	1 cut(s)	243
XcmI	CCANNNNNNNNNTGG	1 cut(s)	96
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.