Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002219.1

Orthogroup ID

OG0004368

Physical Location & Seq

Genomic Coordinates Reverse (-)

52450 .. 54400

Gene Structure 1951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002219.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atggcagctgcagagtttggtcagacagggcggcttggcatttgtcaaaggttggaaccagcattaagatcgtccaagagagacgctaataccaaaattagctatgattatccactagcacatgaccctacagcaagccctggccaaggccggcgcggtgatccagaagacggtacagacgacggtccaggaagtcgccgggcccaagcctcttcaggactacgagctcttcgaccagatcggcccaaacctcttcaggaagtcgccgattccagaaactatatcatgctatcaaatatgtactccacagctggtttgtggagggatgcttcaaaggtgagggatttagtgaaggagaaaggtcttgcgagaaccgcaggatgcagtttaattgaatatggaaataaaattcatcgctttgttgtgggtgatcagtctcaccctgagtcagagaggatatatgccaagttggaagaagtgattgaaaagatccggaaggctggatttattctacatgatgttgaagagccggtgaaagaagatatgatcagtaagcacagtgagaaattagccattgcatttggtgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

196

Amino Acids

21.68

Weight (kDa)

7.78

Isoelectric Point (pI)

55.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46050
fragaria_vesca	FvH4_7g14820
malus_domestica	MD01G1066700.v1.1 MD11G1207600.v1.1
pyrus_communis	pycom01g09600 pycom01g22640 pycom17g24510
rosa_chinensis	RchiOBHm_Chr1g0356771 RchiOBHm_Chr1g0356781 RchiOBHm_Chr1g0375691 RchiOBHm_Chr2g0089631 RchiOBHm_Chr4g0418871
rosa_laevigata	RLG00000011901 RLG00000028084
rosa_multiflora	Rmu_co8104928.1_g000001 Rmu_co8368077.1_g000001 Rmu_sc0000517.1_g000030 Rmu_sc0000935.1_g000021 Rmu_sc0002219.1_g000014 Rmu_sc0005718.1_g000009
rosa_roxburghii	Rroxscaffold_4G00299370
rosa_rugosa	Rorug01G0251100
rosa_samantha	Rh1AG265300 Rh1AG265400 Rh1BG232700 Rh1BG232800 Rh1CG248800 Rh1CG248900 Rh1DG260300 Rh4BG214000 Rh6AG008500
rosa_wichuraiana	Rw4G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	156
AccIII	TCCGGA	1 cut(s)	492
AciI	CCGC	3 cut(s)	31, 156, 375
AclWI	GGATC	2 cut(s)	155, 484
AcoI	YGGCCR	1 cut(s)	142
AcsI	RAATTY	1 cut(s)	408
AcuI	CTGAAG	2 cut(s)	198, 239
AfaI	GTAC	2 cut(s)	175, 302
AfiI	CCNNNNNNNGG	2 cut(s)	146, 170
AgsI	TTSAA	4 cut(s)	333, 395, 485, 524
AjnI	CCWGG	2 cut(s)	139, 187
AluBI	AGCT	4 cut(s)	8, 102, 227, 311
AluI	AGCT	4 cut(s)	8, 102, 227, 311
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	2 cut(s)	75, 441
AlwI	GGATC	2 cut(s)	155, 484
Aor13HI	TCCGGA	1 cut(s)	492
AoxI	GGCC	4 cut(s)	142, 148, 201, 242
ApaI	GGGCCC	1 cut(s)	205
ApeKI	GCWGC	2 cut(s)	5, 8
ApoI	RAATTY	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	4 cut(s)	185, 201, 202, 243
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	5 cut(s)	170, 349, 431, 440, 544
AvaII	GGWCC	1 cut(s)	185
BaeGI	GKGCMC	1 cut(s)	205
BalI	TGGCCA	1 cut(s)	144
BanII	GRGCYC	2 cut(s)	205, 229
BbsI	GAAGAC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	17
BcgI	CGANNNNNNTGC	2 cut(s)	51, 85
BciT130I	CCWGG	2 cut(s)	141, 189
BclI	TGATCA	2 cut(s)	430, 546
BcnI	CCSGG	1 cut(s)	200
BcoDI	GTCTC	2 cut(s)	75, 441
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	2 cut(s)	9, 129
BisI	GCNGC	3 cut(s)	6, 9, 32
BlsI	GCNGC	3 cut(s)	7, 10, 33
Bme1390I	CCNGG	3 cut(s)	141, 189, 200
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	4 cut(s)	185, 201, 202, 243
BmiI	GGNNCC	2 cut(s)	57, 203
BmrFI	CCNGG	3 cut(s)	141, 189, 200
BmsI	GCATC	2 cut(s)	316, 371
BoxI	GACNNNNGTC	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	139, 145
BsaWI	WCCGGW	1 cut(s)	492
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 170
Bse118I	RCCGGY	2 cut(s)	150, 529
Bse3DI	GCAATG	1 cut(s)	573
BseAI	TCCGGA	1 cut(s)	492
BseBI	CCWGG	2 cut(s)	141, 189
BseDI	CCNNGG	2 cut(s)	139, 145
BseGI	GGATG	2 cut(s)	331, 386
BseLI	CCNNNNNNNGG	2 cut(s)	146, 170
BseMI	GCAATG	1 cut(s)	573
BseMII	CTCAG	1 cut(s)	435
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	1 cut(s)	17
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	4 cut(s)	144, 150, 203, 244
BsiHKAI	GWGCWC	1 cut(s)	229
BsiSI	CCGG	4 cut(s)	151, 199, 493, 530
BslI	CCNNNNNNNGG	2 cut(s)	146, 170
BsmAI	GTCTC	2 cut(s)	75, 441
BsmBI	CGTCTC	1 cut(s)	75
BsnI	GGCC	4 cut(s)	144, 150, 203, 244
Bsp120I	GGGCCC	1 cut(s)	201
Bsp1286I	GDGCHC	2 cut(s)	205, 229
Bsp13I	TCCGGA	1 cut(s)	492
Bsp143I	GATC	6 cut(s)	68, 160, 238, 430, 489, 546
BspACI	CCGC	3 cut(s)	31, 156, 375
BspANI	GGCC	4 cut(s)	144, 150, 203, 244
BspCNI	CTCAG	1 cut(s)	436
BspEI	TCCGGA	1 cut(s)	492
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	57, 203
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	2 cut(s)	155, 484
BspQI	GCTCTTC	2 cut(s)	234, 519
BsrDI	GCAATG	1 cut(s)	573
BsrFI	RCCGGY	2 cut(s)	150, 529
BssAI	RCCGGY	2 cut(s)	150, 529
BssECI	CCNNGG	2 cut(s)	139, 145
BssMI	GATC	6 cut(s)	68, 160, 238, 430, 489, 546
BssT1I	CCWWGG	1 cut(s)	145
Bst2UI	CCWGG	2 cut(s)	141, 189
Bst4CI	ACNGT	3 cut(s)	173, 185, 560
Bst6I	CTCTTC	4 cut(s)	217, 234, 258, 519
BstC8I	GCNNGC	2 cut(s)	136, 152
BstDEI	CTNAG	1 cut(s)	444
BstENI	CCTNNNNNAGG	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	331, 386
BstFNI	CGCG	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	6 cut(s)	71, 163, 241, 433, 492, 549
BstMAI	GTCTC	2 cut(s)	75, 441
BstMBI	GATC	6 cut(s)	68, 160, 238, 430, 489, 546
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstNI	CCWGG	2 cut(s)	141, 189
BstPAI	GACNNNNGTC	1 cut(s)	183
BstSCI	CCNGG	3 cut(s)	139, 187, 198
BstSFI	CTRYAG	2 cut(s)	9, 129
BstSLI	GKGCMC	1 cut(s)	205
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	489
BstYI	RGATCY	1 cut(s)	489
BsuRI	GGCC	4 cut(s)	144, 150, 203, 244
BtgZI	GCGATG	1 cut(s)	398
BtsCI	GGATG	2 cut(s)	331, 386
BtsIMutI	CAGTG	1 cut(s)	565
Cac8I	GCNNGC	2 cut(s)	136, 152
CfoI	GCGC	1 cut(s)	156
Cfr10I	RCCGGY	2 cut(s)	150, 529
Cfr13I	GGNCC	4 cut(s)	185, 201, 202, 243
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	174, 301
CviAII	CATG	3 cut(s)	122, 286, 515
CviQI	GTAC	2 cut(s)	174, 301
DdeI	CTNAG	1 cut(s)	444
DpnI	GATC	6 cut(s)	70, 162, 240, 432, 491, 548
DpnII	GATC	6 cut(s)	68, 160, 238, 430, 489, 546
EaeI	YGGCCR	1 cut(s)	142
Eam1104I	CTCTTC	4 cut(s)	217, 234, 258, 519
EarI	CTCTTC	4 cut(s)	217, 234, 258, 519
Ecl136II	GAGCTC	1 cut(s)	227
Eco130I	CCWWGG	1 cut(s)	145
Eco24I	GRGCYC	2 cut(s)	205, 229
Eco47I	GGWCC	1 cut(s)	185
Eco53kI	GAGCTC	1 cut(s)	227
Eco57I	CTGAAG	2 cut(s)	198, 239
EcoICRI	GAGCTC	1 cut(s)	227
EcoNI	CCTNNNNNAGG	1 cut(s)	144
EcoRII	CCWGG	2 cut(s)	139, 187
EcoT14I	CCWWGG	1 cut(s)	145
EcoT38I	GRGCYC	2 cut(s)	205, 229
ErhI	CCWWGG	1 cut(s)	145
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	3 cut(s)	125, 289, 518
FatI	CATG	3 cut(s)	121, 285, 514
FbaI	TGATCA	2 cut(s)	430, 546
Fnu4HI	GCNGC	3 cut(s)	6, 9, 32
FokI	GGATG	2 cut(s)	338, 393
FriOI	GRGCYC	2 cut(s)	205, 229
Fsp4HI	GCNGC	3 cut(s)	6, 9, 32
FspBI	CTAG	1 cut(s)	116
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	3 cut(s)	6, 9, 32
HaeIII	GGCC	4 cut(s)	144, 150, 203, 244
HapII	CCGG	4 cut(s)	151, 199, 493, 530
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	3 cut(s)	125, 289, 518
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HinfI	GANTC	2 cut(s)	269, 446
HpaII	CCGG	4 cut(s)	151, 199, 493, 530
HphI	GGTGA	5 cut(s)	170, 349, 431, 440, 544
Hpy188I	TCNGA	2 cut(s)	24, 451
Hpy188III	TCNNGA	5 cut(s)	164, 216, 257, 273, 493
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	2 cut(s)	346, 490
HpyCH4III	ACNGT	3 cut(s)	173, 185, 560
HpyCH4V	TGCA	3 cut(s)	11, 384, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	1 cut(s)	444
Hsp92II	CATG	3 cut(s)	125, 289, 518
HspAI	GCGC	1 cut(s)	154
Kpn2I	TCCGGA	1 cut(s)	492
KroI	GCCGGC	1 cut(s)	150
KroNI	GCCGGC	1 cut(s)	152
Ksp22I	TGATCA	2 cut(s)	430, 546
Kzo9I	GATC	6 cut(s)	68, 160, 238, 430, 489, 546
LguI	GCTCTTC	2 cut(s)	234, 519
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	2 cut(s)	316, 371
MaeI	CTAG	1 cut(s)	116
MalI	GATC	6 cut(s)	70, 162, 240, 432, 491, 548
MboI	GATC	6 cut(s)	68, 160, 238, 430, 489, 546
MboII	GAAGA	7 cut(s)	179, 204, 221, 245, 485, 536, 551
MflI	RGATCY	1 cut(s)	489
MhlI	GDGCHC	2 cut(s)	205, 229
MlsI	TGGCCA	1 cut(s)	144
MluCI	AATT	4 cut(s)	96, 390, 408, 566
MluNI	TGGCCA	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	455
MmeI	TCCRAC	2 cut(s)	33, 450
MnlI	CCTC	5 cut(s)	220, 261, 315, 333, 447
Mox20I	TGGCCA	1 cut(s)	144
MroI	TCCGGA	1 cut(s)	492
MroNI	GCCGGC	1 cut(s)	150
MscI	TGGCCA	1 cut(s)	144
MseI	TTAA	3 cut(s)	65, 389, 589
Msp20I	TGGCCA	1 cut(s)	144
MspA1I	CMGCKG	2 cut(s)	8, 311
MspI	CCGG	4 cut(s)	151, 199, 493, 530
MspR9I	CCNGG	3 cut(s)	141, 189, 200
MvaI	CCWGG	2 cut(s)	141, 189
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	374
NaeI	GCCGGC	1 cut(s)	152
NciI	CCSGG	1 cut(s)	200
NdeII	GATC	6 cut(s)	68, 160, 238, 430, 489, 546
NgoMIV	GCCGGC	1 cut(s)	150
NlaIII	CATG	3 cut(s)	125, 289, 518
NlaIV	GGNNCC	2 cut(s)	57, 203
PciSI	GCTCTTC	2 cut(s)	234, 519
PcsI	WCGNNNNNNNCGW	2 cut(s)	177, 229
PdiI	GCCGGC	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	269
PfoI	TCCNGGA	1 cut(s)	187
PkrI	GCNGC	3 cut(s)	7, 10, 33
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
PshAI	GACNNNNGTC	1 cut(s)	183
Psp124BI	GAGCTC	1 cut(s)	229
Psp6I	CCWGG	2 cut(s)	139, 187
PspGI	CCWGG	2 cut(s)	139, 187
PspN4I	GGNNCC	2 cut(s)	57, 203
PspOMI	GGGCCC	1 cut(s)	201
PspPI	GGNCC	4 cut(s)	185, 201, 202, 243
PstI	CTGCAG	1 cut(s)	13
PsuI	RGATCY	1 cut(s)	489
PvuII	CAGCTG	2 cut(s)	8, 311
RsaI	GTAC	2 cut(s)	175, 302
RsaNI	GTAC	2 cut(s)	174, 301
SacI	GAGCTC	1 cut(s)	229
SapI	GCTCTTC	2 cut(s)	234, 519
SaqAI	TTAA	3 cut(s)	65, 389, 589
SatI	GCNGC	3 cut(s)	6, 9, 32
Sau3AI	GATC	6 cut(s)	68, 160, 238, 430, 489, 546
Sau96I	GGNCC	4 cut(s)	185, 201, 202, 243
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	3 cut(s)	141, 189, 200
SduI	GDGCHC	2 cut(s)	205, 229
SetI	ASST	8 cut(s)	10, 53, 104, 229, 253, 313, 339, 364
SfaNI	GCATC	2 cut(s)	316, 371
SfcI	CTRYAG	2 cut(s)	9, 129
SinI	GGWCC	1 cut(s)	185
Sse9I	AATT	4 cut(s)	96, 390, 408, 566
SsiI	CCGC	3 cut(s)	31, 156, 375
SspMI	CTAG	1 cut(s)	116
SstI	GAGCTC	1 cut(s)	229
StyD4I	CCNGG	3 cut(s)	139, 187, 198
StyI	CCWWGG	1 cut(s)	145
TaaI	ACNGT	3 cut(s)	173, 185, 560
TaqI	TCGA	1 cut(s)	232
TasI	AATT	4 cut(s)	96, 390, 408, 566
TatI	WGTACW	1 cut(s)	300
TauI	GCSGC	1 cut(s)	34
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	3 cut(s)	65, 389, 589
Tru9I	TTAA	3 cut(s)	65, 389, 589
TscAI	CASTG	1 cut(s)	565
TseI	GCWGC	2 cut(s)	5, 8
TspDTI	ATGAA	1 cut(s)	401
TspRI	CASTG	1 cut(s)	565
VpaK11BI	GGWCC	1 cut(s)	185
XagI	CCTNNNNNAGG	1 cut(s)	144
XapI	RAATTY	1 cut(s)	408
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.