pycom01g22640

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0004368
Physical Location & Seq
Reverse (-)
20162031 .. 20162402
372 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g22640.1

Sequence Viewer

Length: 372 bp
ATGGAGTTTATTCAAGAAATGCCAATTGAACCAGATGGGGTTATCTGGGGAGCTCTGCTAAATGCTTGTTGGTTCTGGATGGACATGGAACTGGGCGAGAGGGTGGCTGAGAAAATGTTAAGTTTGGATCCAAAACCAGCCTCCGCATACATACTCTTATCGAACATGTATGCAGTACTGGGAAAGTGGGGGGCGAAGATGAACGCGAGGAAGCGATTGACAAACTTGGAGGTGAAAAAGGATCCTGGATGTAGTTGGATTGAGCTGAACAGGAAAGTTCATGTATTCTGTGTAGAAGATAAGTCCCATCCTCATTGTAATCTGATTTATGAAACTTTGGAGTATCTGACAGCAAATATATATAAACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cation_ATPase E1-E2_ATPase PPR PPR_2 PhoLip_ATPase_C

Protein Analysis

124

Amino Acids

14.26

Weight (kDa)

5.9

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E_motif PF20431 28 - 88 4.3e-15 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 206
AciI CCGC 1 cut(s) 144
AclWI GGATC 4 cut(s) 122, 135, 236, 249
AfaI GTAC 1 cut(s) 177
AflIII ACRYGT 1 cut(s) 165
AgsI TTSAA 2 cut(s) 14, 29
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 2 cut(s) 53, 265
AluI AGCT 2 cut(s) 53, 265
Alw21I GWGCWC 1 cut(s) 55
AlwI GGATC 4 cut(s) 122, 135, 236, 249
AsuHPI GGTGA 1 cut(s) 244
BamHI GGATCC 2 cut(s) 127, 241
BanII GRGCYC 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 55
BccI CCATC 3 cut(s) 29, 73, 315
BciT130I CCWGG 1 cut(s) 246
BmcAI AGTACT 1 cut(s) 177
Bme1390I CCNGG 1 cut(s) 246
BmiI GGNNCC 2 cut(s) 129, 243
BmrFI CCNGG 1 cut(s) 246
BmrI ACTGGG 2 cut(s) 101, 188
BmuI ACTGGG 2 cut(s) 101, 188
Bse1I ACTGG 2 cut(s) 96, 183
BseBI CCWGG 1 cut(s) 246
BseGI GGATG 3 cut(s) 84, 254, 307
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 2 cut(s) 96, 183
Bsh1236I CGCG 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 55
BslFI GGGAC 1 cut(s) 289
BsmFI GGGAC 1 cut(s) 289
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 2 cut(s) 127, 241
BspACI CCGC 1 cut(s) 144
BspCNI CTCAG 1 cut(s) 100
BspFNI CGCG 1 cut(s) 206
BspLI GGNNCC 2 cut(s) 129, 243
BspPI GGATC 4 cut(s) 122, 135, 236, 249
BsrI ACTGG 2 cut(s) 96, 183
BssMI GATC 2 cut(s) 127, 241
Bst2UI CCWGG 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 108
BstF5I GGATG 3 cut(s) 84, 254, 307
BstFNI CGCG 1 cut(s) 206
BstKTI GATC 2 cut(s) 130, 244
BstMBI GATC 2 cut(s) 127, 241
BstNI CCWGG 1 cut(s) 246
BstNSI RCATGY 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 244
BstUI CGCG 1 cut(s) 206
BstX2I RGATCY 2 cut(s) 127, 241
BstYI RGATCY 2 cut(s) 127, 241
BtsCI GGATG 3 cut(s) 84, 254, 307
Csp6I GTAC 1 cut(s) 176
CviAII CATG 3 cut(s) 85, 166, 281
CviJI RGCY 4 cut(s) 53, 107, 140, 265
CviKI_1 RGCY 4 cut(s) 53, 107, 140, 265
CviQI GTAC 1 cut(s) 176
DdeI CTNAG 1 cut(s) 108
DpnI GATC 2 cut(s) 129, 243
DpnII GATC 2 cut(s) 127, 241
Ecl136II GAGCTC 1 cut(s) 53
Eco24I GRGCYC 1 cut(s) 55
Eco53kI GAGCTC 1 cut(s) 53
EcoICRI GAGCTC 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 55
FaeI CATG 3 cut(s) 88, 169, 284
FaqI GGGAC 1 cut(s) 289
FatI CATG 3 cut(s) 84, 165, 280
FokI GGATG 3 cut(s) 91, 261, 294
FriOI GRGCYC 1 cut(s) 55
Hin1II CATG 3 cut(s) 88, 169, 284
HphI GGTGA 1 cut(s) 244
Hpy188I TCNGA 2 cut(s) 324, 348
Hpy188III TCNNGA 2 cut(s) 14, 76
HpyCH4V TGCA 1 cut(s) 173
HpyF3I CTNAG 1 cut(s) 108
Hsp92II CATG 3 cut(s) 88, 169, 284
Kzo9I GATC 2 cut(s) 127, 241
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 9 cut(s) 31, 45, 61, 77, 150, 164, 231, 256, 258
MalI GATC 2 cut(s) 129, 243
MboI GATC 2 cut(s) 127, 241
MboII GAAGA 2 cut(s) 208, 308
MfeI CAATTG 1 cut(s) 24
MflI RGATCY 2 cut(s) 127, 241
MhlI GDGCHC 1 cut(s) 55
MluCI AATT 1 cut(s) 24
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 5 cut(s) 93, 151, 201, 223, 321
MseI TTAA 1 cut(s) 119
MspR9I CCNGG 1 cut(s) 246
MunI CAATTG 1 cut(s) 24
MvaI CCWGG 1 cut(s) 246
MvnI CGCG 1 cut(s) 206
NdeII GATC 2 cut(s) 127, 241
NlaIII CATG 3 cut(s) 88, 169, 284
NlaIV GGNNCC 2 cut(s) 129, 243
NspI RCATGY 1 cut(s) 169
PciI ACATGT 1 cut(s) 165
PfoI TCCNGGA 1 cut(s) 244
PscI ACATGT 1 cut(s) 165
Psp124BI GAGCTC 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 2 cut(s) 129, 243
PsuI RGATCY 2 cut(s) 127, 241
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
SacI GAGCTC 1 cut(s) 55
SaqAI TTAA 1 cut(s) 119
Sau3AI GATC 2 cut(s) 127, 241
ScaI AGTACT 1 cut(s) 177
ScrFI CCNGG 1 cut(s) 246
SduI GDGCHC 1 cut(s) 55
SetI ASST 3 cut(s) 55, 234, 267
Sse9I AATT 1 cut(s) 24
SsiI CCGC 1 cut(s) 144
SstI GAGCTC 1 cut(s) 55
StyD4I CCNGG 1 cut(s) 244
TaqI TCGA 1 cut(s) 161
TasI AATT 1 cut(s) 24
TatI WGTACW 1 cut(s) 175
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TspDTI ATGAA 3 cut(s) 215, 269, 345
XceI RCATGY 1 cut(s) 169
ZrmI AGTACT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.