Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004368

Physical Location & Seq

Genomic Coordinates Reverse (-)

18425542 .. 18426185

Gene Structure 644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028084

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAGTCGAATTTGTTTCTGGGTTTTTCTTATTTTAGGAGAATGTTGTTGGAAAAGAGCTGGTCCGGATGATATAACAGTTAATGGTTTGTTGCGTGGTTGCATAGAGTTGAAGGATGTAGAGTTTAGTAGACAATTGCATTGTTTAGCGGTGAAGTTAGGATTTGATTTGAGTTGCTTTGTGGGTAGCGCTCTTGTTGAAGGGGCCTTTGGGGTCTTCAATGTGATGAGGTTGGAAGGTGTTAAGGGGGATGAGTTTACATTTAGCAGCCTGCTCAGGTTTCCAGCGCACCTTTTTGACATGTATGTAAAGAAGGGTAACATAGGCAATGCTCGCAAGGCTTTTGATGCAATGTCCATCAAGAATGTTGTTTCTTGGAACACTATAATTGTGGGATATGGACAGCATGGAAAAGCCGAAAAGGGATTCAAGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

146

Amino Acids

16.21

Weight (kDa)

8.97

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46050
fragaria_vesca	FvH4_7g14820
malus_domestica	MD01G1066700.v1.1 MD11G1207600.v1.1
pyrus_communis	pycom01g09600 pycom01g22640 pycom17g24510
rosa_chinensis	RchiOBHm_Chr1g0356771 RchiOBHm_Chr1g0356781 RchiOBHm_Chr1g0375691 RchiOBHm_Chr2g0089631 RchiOBHm_Chr4g0418871
rosa_laevigata	RLG00000011901 RLG00000028084
rosa_multiflora	Rmu_co8104928.1_g000001 Rmu_co8368077.1_g000001 Rmu_sc0000517.1_g000030 Rmu_sc0000935.1_g000021 Rmu_sc0002219.1_g000014 Rmu_sc0005718.1_g000009
rosa_roxburghii	Rroxscaffold_4G00299370
rosa_rugosa	Rorug01G0251100
rosa_samantha	Rh1AG265300 Rh1AG265400 Rh1BG232700 Rh1BG232800 Rh1CG248800 Rh1CG248900 Rh1DG260300 Rh4BG214000 Rh6AG008500
rosa_wichuraiana	Rw4G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	130
AccIII	TCCGGA	1 cut(s)	64
AciI	CCGC	1 cut(s)	149
AcsI	RAATTY	1 cut(s)	9
AfeI	AGCGCT	1 cut(s)	190
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	4 cut(s)	112, 200, 220, 430
AjuI	GAANNNNNNNTTGG	2 cut(s)	192, 224
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
Aor13HI	TCCGGA	1 cut(s)	64
Aor51HI	AGCGCT	1 cut(s)	190
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	1 cut(s)	267
ApoI	RAATTY	1 cut(s)	9
AspLEI	GCGC	2 cut(s)	191, 289
AspS9I	GGNCC	2 cut(s)	62, 204
AsuHPI	GGTGA	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	62
BbsI	GAAGAC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	279
BccI	CCATC	1 cut(s)	365
BfoI	RGCGCY	1 cut(s)	192
BisI	GCNGC	1 cut(s)	268
BlsI	GCNGC	1 cut(s)	269
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	2 cut(s)	62, 204
BmiI	GGNNCC	1 cut(s)	205
BmsI	GCATC	1 cut(s)	337
BpiI	GAAGAC	1 cut(s)	208
Bpu10I	CCTNAGC	1 cut(s)	275
BsaWI	WCCGGW	1 cut(s)	64
Bse3DI	GCAATG	2 cut(s)	334, 357
BseAI	TCCGGA	1 cut(s)	64
BseGI	GGATG	3 cut(s)	73, 121, 256
BseMI	GCAATG	2 cut(s)	334, 357
BseMII	CTCAG	1 cut(s)	289
BseXI	GCAGC	1 cut(s)	279
BshFI	GGCC	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	65
BsnI	GGCC	1 cut(s)	206
Bsp13I	TCCGGA	1 cut(s)	64
BspACI	CCGC	1 cut(s)	149
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	288
BspEI	TCCGGA	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	205
BsrDI	GCAATG	2 cut(s)	334, 357
Bst4CI	ACNGT	1 cut(s)	79
BstC8I	GCNNGC	2 cut(s)	272, 334
BstDEI	CTNAG	1 cut(s)	275
BstF5I	GGATG	3 cut(s)	73, 121, 256
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	2 cut(s)	191, 289
BstMWI	GCNNNNNNNGC	3 cut(s)	333, 338, 347
BstNSI	RCATGY	1 cut(s)	304
BstV1I	GCAGC	1 cut(s)	279
BstV2I	GAAGAC	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	206
BtsCI	GGATG	3 cut(s)	73, 121, 256
Cac8I	GCNNGC	2 cut(s)	272, 334
CfoI	GCGC	2 cut(s)	191, 289
Cfr13I	GGNCC	2 cut(s)	62, 204
CviAII	CATG	2 cut(s)	301, 407
CviJI	RGCY	5 cut(s)	59, 206, 270, 341, 416
CviKI_1	RGCY	5 cut(s)	59, 206, 270, 341, 416
DdeI	CTNAG	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	62
Eco47III	AGCGCT	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	204
FaeI	CATG	2 cut(s)	304, 410
FaiI	YATR	8 cut(s)	74, 104, 302, 306, 323, 386, 399, 408
FatI	CATG	2 cut(s)	300, 406
FblI	GTMKAC	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	268
FokI	GGATG	3 cut(s)	80, 128, 263
Fsp4HI	GCNGC	1 cut(s)	268
GlaI	GCGC	2 cut(s)	190, 288
GluI	GCNGC	1 cut(s)	268
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	1 cut(s)	65
HhaI	GCGC	2 cut(s)	191, 289
Hin1II	CATG	2 cut(s)	304, 410
Hin6I	GCGC	2 cut(s)	189, 287
HinP1I	GCGC	2 cut(s)	189, 287
HinfI	GANTC	2 cut(s)	4, 426
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	2 cut(s)	131, 258
Hpy188III	TCNNGA	2 cut(s)	65, 361
Hpy8I	GTNNAC	2 cut(s)	131, 258
HpyAV	CCTTC	4 cut(s)	106, 194, 230, 307
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4V	TGCA	3 cut(s)	102, 139, 350
HpyF10VI	GCNNNNNNNGC	3 cut(s)	333, 338, 347
HpyF3I	CTNAG	1 cut(s)	275
Hsp92II	CATG	2 cut(s)	304, 410
HspAI	GCGC	2 cut(s)	189, 287
Kpn2I	TCCGGA	1 cut(s)	64
LpnPI	CCDG	6 cut(s)	4, 45, 78, 262, 284, 297
Lsp1109I	GCAGC	1 cut(s)	279
LweI	GCATC	1 cut(s)	337
MaeIII	GTNAC	1 cut(s)	317
MboII	GAAGA	1 cut(s)	208
MfeI	CAATTG	1 cut(s)	134
MluCI	AATT	3 cut(s)	9, 134, 387
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	2 cut(s)	29, 213
MnlI	CCTC	1 cut(s)	222
MroI	TCCGGA	1 cut(s)	64
MseI	TTAA	2 cut(s)	81, 243
MspI	CCGG	1 cut(s)	65
MunI	CAATTG	1 cut(s)	134
MwoI	GCNNNNNNNGC	3 cut(s)	333, 338, 347
NlaIII	CATG	2 cut(s)	304, 410
NlaIV	GGNNCC	1 cut(s)	205
NspI	RCATGY	1 cut(s)	304
PciI	ACATGT	1 cut(s)	300
PfeI	GAWTC	1 cut(s)	426
PkrI	GCNGC	1 cut(s)	269
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PscI	ACATGT	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	2 cut(s)	62, 204
SaqAI	TTAA	2 cut(s)	81, 243
SatI	GCNGC	1 cut(s)	268
Sau96I	GGNCC	2 cut(s)	62, 204
SchI	GAGTC	1 cut(s)	13
SetI	ASST	5 cut(s)	61, 233, 241, 281, 294
SfaNI	GCATC	1 cut(s)	337
SinI	GGWCC	1 cut(s)	62
Sse9I	AATT	3 cut(s)	9, 134, 387
SsiI	CCGC	1 cut(s)	149
TaaI	ACNGT	1 cut(s)	79
TaqI	TCGA	1 cut(s)	7
TasI	AATT	3 cut(s)	9, 134, 387
TfiI	GAWTC	1 cut(s)	426
Tru1I	TTAA	2 cut(s)	81, 243
Tru9I	TTAA	2 cut(s)	81, 243
TseI	GCWGC	1 cut(s)	267
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	1 cut(s)	9
XceI	RCATGY	1 cut(s)	304
XmiI	GTMKAC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.