FvH4_7g14820

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
13001999 .. 13004724
2726 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g14820.t1

Sequence Viewer

Length: 1686 bp
ATGTCTCACGTGGCCTATTCCTTATGCTCCAGTGCCCTCAAACTCTCGGCTAAACTGGGTTTTGTTCGCGCGGGAAAGCAACTACATGGGCACGTCTTAAAGTTGGGAATGTATAACTTACAGTCCTTGCAAATCCAAATTCTCAACGTTTACGTCAAATGCAAGGATTTAAATCATGCACAGAAGGTGTTTGATGAAATGCGTGTGAGAAATGTGGTGGCTTGGAATGCAATGATTACTGGGTTTGTTAACTGTAGCGGTAATCATGAGTTGAATTTGTATCTGGGTTTTTGTTATTTTAGGAGAATGTTGGTGGAGAGAGGTGGTCCGGATGGTATAACATTTAATGGTTTGTTCCGCGGTTGCGTGAAGTCAAAGGATGTAGAGATTGGTAGACAATTACATTGTTTTGCGGTGAAATTAGGATTTGGTTTGAATTGTTTTGTGGGGAGCGGAATTGTTGGTTTGTATGCGAAGTTTGGTTTAGTTGAAGATGCAAGGTGTGCTTTCGATTGTGTGTTGTTCAAGGATCAGGTTTTGTGGAATGTTATGGTAAATTGCTATGCTTCAAATTCTTTGGCAGAAAGGGCCTTTGGGGTCTTCAATGTGATGAGGTTGGAGGGTGTTAAGGGGGATGAGTTTACGTTTAGCAGCCTACTCAGTGCATGTAGTACTTGGGGGTCTTGTGAACTTGGAATGCAGATTCATGGCAGTGTTATTAGACAGTTGTTTGATTATGATGTTCAGGTTTCCAGTACACTTGTTGACATGTATGCAAAGAATGGTAACATAGGTGATGCTCGCAAGGCTTTTGATGCAATGTTCATCAAGAATGTCGTTTCTTGGAACACTATAATTGTGGGATATGGGCAGCATGGGCAAGGGATTGAAGCTATAAAAGTTCTGCGGGAAATGTTTCGGGAACGTTTTTATCCTGATGAGTTTACTCTGGCAAGCATTGTTAGCTCATGTGGTAATGTACCATCTGCTAATGAACTTATGCAAGTTCATGCTTACATTATTAAATTGGGGTTCCATTTGTTTTCATCAATTGCTAATGCTCTAATAAATGCGTACTCCAAATGTGGTAGTATTGCTTCTGCATCTAAATGTTTTGACTTGGTTACTGAACCTGACCTAGTTACATGGACTTCAGTTATATGTGCCTATGCATTCCATGGTCTTGCCAAAGAAGCTACTCAGATTTTCGACAATATGTTAACTTATGGCATAAGACCTGACGGAATTGCCTTTCTTGGGGTTCTTTCTGCATGTAGTCATGGAGGGTTAGTAAAGAAAGGCCTTCATTACTTTAAATTAATGACTGATGACTATCAAGTTTTTCCAGATTCCGAGCATTATACCTGTCTCATTGACCTTCTTGGACGAGCTGGTCTTTTGGATGAGGCTTCCATTGTTTTGACCTCGATGTCAATTAAAGCCGATCCCAATACATTTGGAGCATTCATAGGGGCGTGTAAAGTCAATGGAAATGTAGGATTAGCAAAATGGGCTGCAGAAAAGCTTTTCACATTAGAAGCAAACAAACCTGTGAATTATAGTCTCATTTCTAACATCTATTCTACTGAAGGTCACTGGGCTGATGTTGCAAAAGTACGCCAAATGATGAGGTACAATTGTGATCAGAAAGCTCCCGGTTGTAGCTGGCTGGAGGTAGGCAACTAG

Protein Analysis

562

Amino Acids

61.91

Weight (kDa)

7.97

Isoelectric Point (pI)

23.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 177 - 224 1.2e-09 PPR repeat family
PPR_2 PF13041 277 - 324 1.2e-09 PPR repeat family
PPR PF01535 280 - 309 1.2e-06 PPR repeat
PPR_2 PF13041 378 - 426 1.8e-07 PPR repeat family
E_motif PF20431 498 - 558 5.2e-18 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1392, 1429
AccBSI CCGCTC 1 cut(s) 453
AccI GTMKAC 1 cut(s) 394
AccII CGCG 3 cut(s) 69, 71, 360
AccIII TCCGGA 1 cut(s) 328
AciI CCGC 7 cut(s) 71, 258, 358, 360, 413, 453, 907
AclI AACGTT 2 cut(s) 147, 925
AclWI GGATC 2 cut(s) 537, 1439
AcsI RAATTY 3 cut(s) 138, 274, 571
AcuI CTGAAG 2 cut(s) 1137, 1608
AcvI CACGTG 1 cut(s) 10
AfaI GTAC 6 cut(s) 673, 757, 981, 1076, 1617, 1634
AfiI CCNNNNNNNGG 1 cut(s) 1257
AflIII ACRYGT 1 cut(s) 768
AgsI TTSAA 7 cut(s) 274, 436, 491, 526, 570, 604, 890
AjiI CACGTC 1 cut(s) 94
AjuI GAANNNNNNNTTGG 2 cut(s) 576, 608
AluBI AGCT 7 cut(s) 893, 966, 1196, 1391, 1525, 1652, 1665
AluI AGCT 7 cut(s) 893, 966, 1196, 1391, 1525, 1652, 1665
Alw26I GTCTC 3 cut(s) 9, 1373, 1568
AlwI GGATC 2 cut(s) 537, 1439
Aor13HI TCCGGA 1 cut(s) 328
AoxI GGCC 3 cut(s) 12, 588, 1300
ApeKI GCWGC 3 cut(s) 651, 871, 1514
ApoI RAATTY 3 cut(s) 138, 274, 571
AseI ATTAAT 1 cut(s) 1319
Asp700I GAANNNNTTC 1 cut(s) 915
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 2 cut(s) 326, 588
AsuC2I CCSGG 1 cut(s) 1656
AsuHPI GGTGA 2 cut(s) 427, 806
AvaII GGWCC 1 cut(s) 326
BaeGI GKGCMC 2 cut(s) 37, 93
BaeI ACNNNNGTAYC 2 cut(s) 1624, 1657
BarI GAAGNNNNNNTAC 2 cut(s) 1081, 1113
BbrPI CACGTG 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 592
BbvI GCAGC 3 cut(s) 663, 883, 1501
BccI CCATC 2 cut(s) 326, 991
BclI TGATCA 1 cut(s) 1642
BcnI CCSGG 1 cut(s) 1656
BcoDI GTCTC 3 cut(s) 9, 1373, 1568
BfaI CTAG 2 cut(s) 1139, 1684
BfmI CTRYAG 2 cut(s) 253, 1515
BisI GCNGC 3 cut(s) 652, 872, 1515
BlsI GCNGC 3 cut(s) 653, 873, 1516
BmcAI AGTACT 1 cut(s) 673
Bme1390I CCNGG 1 cut(s) 1656
Bme18I GGWCC 1 cut(s) 326
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 326, 588
BmiI GGNNCC 1 cut(s) 1034
BmrFI CCNGG 1 cut(s) 1656
BmrI ACTGGG 3 cut(s) 65, 249, 1606
BmsI GCATC 4 cut(s) 484, 787, 805, 1112
BmuI ACTGGG 3 cut(s) 65, 249, 1606
BpiI GAAGAC 1 cut(s) 592
BpmI CTGGAG 1 cut(s) 13
BpuMI CCSGG 1 cut(s) 1656
BsaAI YACGTR 1 cut(s) 10
BsaBI GATNNNNATC 2 cut(s) 171, 1332
BsaJI CCNNGG 2 cut(s) 358, 1177
BsaWI WCCGGW 1 cut(s) 328
BsaXI ACNNNNNCTCC 2 cut(s) 1275, 1305
Bsc4I CCNNNNNNNGG 1 cut(s) 1257
Bse1I ACTGG 5 cut(s) 30, 60, 244, 753, 1601
Bse3DI GCAATG 2 cut(s) 237, 825
Bse8I GATNNNNATC 2 cut(s) 171, 1332
BseAI TCCGGA 1 cut(s) 328
BseDI CCNNGG 2 cut(s) 358, 1177
BseGI GGATG 4 cut(s) 337, 385, 640, 1408
BseJI GATNNNNATC 2 cut(s) 171, 1332
BseLI CCNNNNNNNGG 1 cut(s) 1257
BseMI GCAATG 2 cut(s) 237, 825
BseMII CTCAG 2 cut(s) 673, 1214
BseNI ACTGG 5 cut(s) 30, 60, 244, 753, 1601
BseSI GKGCMC 2 cut(s) 37, 93
BseXI GCAGC 3 cut(s) 663, 883, 1501
Bsh1236I CGCG 3 cut(s) 69, 71, 360
BshFI GGCC 3 cut(s) 14, 590, 1302
BsiSI CCGG 2 cut(s) 329, 1656
BslI CCNNNNNNNGG 1 cut(s) 1257
BsmAI GTCTC 3 cut(s) 9, 1373, 1568
BsmI GAATGC 4 cut(s) 232, 702, 1172, 1463
BsnI GGCC 3 cut(s) 14, 590, 1302
Bsp1286I GDGCHC 2 cut(s) 37, 93
Bsp13I TCCGGA 1 cut(s) 328
Bsp143I GATC 3 cut(s) 529, 1444, 1642
Bsp19I CCATGG 1 cut(s) 1177
BspACI CCGC 7 cut(s) 71, 258, 358, 360, 413, 453, 907
BspANI GGCC 3 cut(s) 14, 590, 1302
BspCNI CTCAG 2 cut(s) 672, 1213
BspEI TCCGGA 1 cut(s) 328
BspFNI CGCG 3 cut(s) 69, 71, 360
BspHI TCATGA 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 1034
BspMAI CTGCAG 1 cut(s) 1519
BspPI GGATC 2 cut(s) 537, 1439
BsrBI CCGCTC 1 cut(s) 453
BsrDI GCAATG 2 cut(s) 237, 825
BsrI ACTGG 5 cut(s) 30, 60, 244, 753, 1601
BssECI CCNNGG 2 cut(s) 358, 1177
BssMI GATC 3 cut(s) 529, 1444, 1642
BssT1I CCWWGG 1 cut(s) 1177
Bst4CI ACNGT 3 cut(s) 123, 254, 726
BstAPI GCANNNNNTGC 1 cut(s) 503
BstBAI YACGTR 1 cut(s) 10
BstC8I GCNNGC 3 cut(s) 802, 955, 1667
BstDEI CTNAG 2 cut(s) 659, 1200
BstDSI CCRYGG 2 cut(s) 358, 1177
BstF5I GGATG 4 cut(s) 337, 385, 640, 1408
BstFNI CGCG 3 cut(s) 69, 71, 360
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 3 cut(s) 532, 1447, 1645
BstMAI GTCTC 3 cut(s) 9, 1373, 1568
BstMBI GATC 3 cut(s) 529, 1444, 1642
BstNSI RCATGY 3 cut(s) 669, 772, 1275
BstSCI CCNGG 1 cut(s) 1654
BstSFI CTRYAG 2 cut(s) 253, 1515
BstSLI GKGCMC 2 cut(s) 37, 93
BstUI CGCG 3 cut(s) 69, 71, 360
BstV1I GCAGC 3 cut(s) 663, 883, 1501
BstV2I GAAGAC 1 cut(s) 592
BsuRI GGCC 3 cut(s) 14, 590, 1302
BtgI CCRYGG 2 cut(s) 358, 1177
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 4 cut(s) 337, 385, 640, 1408
BtsI GCAGTG 1 cut(s) 718
BtsIMutI CAGTG 4 cut(s) 37, 667, 718, 1594
Cac8I GCNNGC 3 cut(s) 802, 955, 1667
CciI TCATGA 1 cut(s) 265
CfoI GCGC 1 cut(s) 71
Cfr13I GGNCC 2 cut(s) 326, 588
Cfr42I CCGCGG 1 cut(s) 361
Csp6I GTAC 6 cut(s) 672, 756, 980, 1075, 1616, 1633
CviQI GTAC 6 cut(s) 672, 756, 980, 1075, 1616, 1633
DdeI CTNAG 2 cut(s) 659, 1200
DpnI GATC 3 cut(s) 531, 1446, 1644
DpnII GATC 3 cut(s) 529, 1444, 1642
DraI TTTAAA 2 cut(s) 171, 1315
DrdI GACNNNNNNGTC 2 cut(s) 1392, 1429
DseDI GACNNNNNNGTC 2 cut(s) 1392, 1429
Eco130I CCWWGG 1 cut(s) 1177
Eco147I AGGCCT 1 cut(s) 1302
Eco47I GGWCC 1 cut(s) 326
Eco57I CTGAAG 2 cut(s) 1137, 1608
Eco72I CACGTG 1 cut(s) 10
EcoO109I RGGNCCY 1 cut(s) 588
EcoT14I CCWWGG 1 cut(s) 1177
EcoT22I ATGCAT 1 cut(s) 1174
ErhI CCWWGG 1 cut(s) 1177
FalI AAGNNNNNCTT 2 cut(s) 490, 522
FauI CCCGC 2 cut(s) 64, 900
FbaI TGATCA 1 cut(s) 1642
FblI GTMKAC 1 cut(s) 394
Fnu4HI GCNGC 3 cut(s) 652, 872, 1515
FokI GGATG 4 cut(s) 344, 392, 647, 1415
Fsp4HI GCNGC 3 cut(s) 652, 872, 1515
FspBI CTAG 2 cut(s) 1139, 1684
GlaI GCGC 1 cut(s) 70
GluI GCNGC 3 cut(s) 652, 872, 1515
GsuI CTGGAG 1 cut(s) 13
HaeIII GGCC 3 cut(s) 14, 590, 1302
HapII CCGG 2 cut(s) 329, 1656
HhaI GCGC 1 cut(s) 71
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HincII GTYRAC 3 cut(s) 250, 766, 1221
HindII GTYRAC 3 cut(s) 250, 766, 1221
HindIII AAGCTT 1 cut(s) 1523
HinfI GANTC 2 cut(s) 703, 1349
HpaI GTTAAC 2 cut(s) 250, 1221
HpaII CCGG 2 cut(s) 329, 1656
HphI GGTGA 2 cut(s) 427, 806
Hpy166II GTNNAC 9 cut(s) 151, 250, 395, 642, 689, 758, 766, 945, 1221
Hpy188I TCNGA 3 cut(s) 1203, 1354, 1647
Hpy188III TCNNGA 6 cut(s) 266, 329, 829, 920, 935, 1346
Hpy8I GTNNAC 9 cut(s) 151, 250, 395, 642, 689, 758, 766, 945, 1221
HpyAV CCTTC 4 cut(s) 178, 1313, 1388, 1583
HpyCH4III ACNGT 3 cut(s) 123, 254, 726
HpyCH4IV ACGT 6 cut(s) 9, 93, 147, 153, 644, 925
HpyF3I CTNAG 2 cut(s) 659, 1200
HpySE526I ACGT 6 cut(s) 9, 93, 147, 153, 644, 925
HspAI GCGC 1 cut(s) 69
Kpn2I TCCGGA 1 cut(s) 328
Ksp22I TGATCA 1 cut(s) 1642
KspAI GTTAAC 2 cut(s) 250, 1221
KspI CCGCGG 1 cut(s) 361
Kzo9I GATC 3 cut(s) 529, 1444, 1642
LmnI GCTCC 4 cut(s) 32, 450, 1460, 1657
Lsp1109I GCAGC 3 cut(s) 663, 883, 1501
LweI GCATC 4 cut(s) 484, 787, 805, 1112
MaeI CTAG 2 cut(s) 1139, 1684
MaeII ACGT 6 cut(s) 9, 93, 147, 153, 644, 925
MaeIII GTNAC 4 cut(s) 785, 1123, 1141, 1592
MalI GATC 3 cut(s) 531, 1446, 1644
MbiI CCGCTC 1 cut(s) 453
MboI GATC 3 cut(s) 529, 1444, 1642
MboII GAAGA 2 cut(s) 503, 592
MfeI CAATTG 2 cut(s) 1050, 1636
MhlI GDGCHC 2 cut(s) 37, 93
MmeI TCCRAC 1 cut(s) 597
MnlI CCTC 9 cut(s) 47, 314, 606, 613, 1277, 1399, 1435, 1623, 1666
Mph1103I ATGCAT 1 cut(s) 1174
MroI TCCGGA 1 cut(s) 328
MroXI GAANNNNTTC 1 cut(s) 915
MslI CAYNNNNRTG 2 cut(s) 711, 1108
MspA1I CMGCKG 1 cut(s) 360
MspI CCGG 2 cut(s) 329, 1656
MspR9I CCNGG 1 cut(s) 1656
MunI CAATTG 2 cut(s) 1050, 1636
Mva1269I GAATGC 4 cut(s) 232, 702, 1172, 1463
MvnI CGCG 3 cut(s) 69, 71, 360
NciI CCSGG 1 cut(s) 1656
NcoI CCATGG 1 cut(s) 1177
NdeII GATC 3 cut(s) 529, 1444, 1642
NlaIV GGNNCC 1 cut(s) 1034
NmeAIII GCCGAG 1 cut(s) 26
NmuCI GTSAC 1 cut(s) 1592
NsiI ATGCAT 1 cut(s) 1174
NspI RCATGY 3 cut(s) 669, 772, 1275
PagI TCATGA 1 cut(s) 265
PceI AGGCCT 1 cut(s) 1302
PciI ACATGT 1 cut(s) 768
PctI GAATGC 4 cut(s) 232, 702, 1172, 1463
PdmI GAANNNNTTC 1 cut(s) 915
PfeI GAWTC 2 cut(s) 703, 1349
PkrI GCNGC 3 cut(s) 653, 873, 1516
PmaCI CACGTG 1 cut(s) 10
PmlI CACGTG 1 cut(s) 10
Ppu21I YACGTR 1 cut(s) 10
PscI ACATGT 1 cut(s) 768
PshBI ATTAAT 1 cut(s) 1319
Psp1406I AACGTT 2 cut(s) 147, 925
PspCI CACGTG 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 1034
PspPI GGNCC 2 cut(s) 326, 588
PstI CTGCAG 1 cut(s) 1519
RsaI GTAC 6 cut(s) 673, 757, 981, 1076, 1617, 1634
RsaNI GTAC 6 cut(s) 672, 756, 980, 1075, 1616, 1633
RseI CAYNNNNRTG 2 cut(s) 711, 1108
SacII CCGCGG 1 cut(s) 361
SatI GCNGC 3 cut(s) 652, 872, 1515
Sau3AI GATC 3 cut(s) 529, 1444, 1642
Sau96I GGNCC 2 cut(s) 326, 588
ScaI AGTACT 1 cut(s) 673
ScrFI CCNGG 1 cut(s) 1656
SduI GDGCHC 2 cut(s) 37, 93
SfaNI GCATC 4 cut(s) 484, 787, 805, 1112
SfcI CTRYAG 2 cut(s) 253, 1515
Sfr303I CCGCGG 1 cut(s) 361
SgrBI CCGCGG 1 cut(s) 361
SinI GGWCC 1 cut(s) 326
SmiI ATTTAAAT 1 cut(s) 171
SmiMI CAYNNNNRTG 2 cut(s) 711, 1108
SseBI AGGCCT 1 cut(s) 1302
SsiI CCGC 7 cut(s) 71, 258, 358, 360, 413, 453, 907
SspMI CTAG 2 cut(s) 1139, 1684
StuI AGGCCT 1 cut(s) 1302
StyD4I CCNGG 1 cut(s) 1654
StyI CCWWGG 1 cut(s) 1177
SwaI ATTTAAAT 1 cut(s) 171
TaaI ACNGT 3 cut(s) 123, 254, 726
TaiI ACGT 6 cut(s) 12, 96, 150, 156, 647, 928
TaqI TCGA 3 cut(s) 510, 1209, 1427
TatI WGTACW 2 cut(s) 671, 755
TfiI GAWTC 2 cut(s) 703, 1349
TscAI CASTG 4 cut(s) 37, 667, 718, 1601
TseFI GTSAC 1 cut(s) 1592
TseI GCWGC 3 cut(s) 651, 871, 1514
Tsp45I GTSAC 1 cut(s) 1592
TspDTI ATGAA 8 cut(s) 210, 695, 814, 998, 1008, 1035, 1295, 1456
TspGWI ACGGA 1 cut(s) 1257
TspRI CASTG 4 cut(s) 37, 667, 718, 1601
VpaK11BI GGWCC 1 cut(s) 326
VspI ATTAAT 1 cut(s) 1319
XapI RAATTY 3 cut(s) 138, 274, 571
XceI RCATGY 3 cut(s) 669, 772, 1275
XmiI GTMKAC 1 cut(s) 394
XmnI GAANNNNTTC 1 cut(s) 915
XspI CTAG 2 cut(s) 1139, 1684
ZrmI AGTACT 1 cut(s) 673
Zsp2I ATGCAT 1 cut(s) 1174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.