Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G46050 |
| fragaria_vesca | FvH4_7g14820 |
| malus_domestica | MD01G1066700.v1.1 MD11G1207600.v1.1 |
| pyrus_communis | pycom01g09600 pycom01g22640 pycom17g24510 |
| rosa_chinensis | RchiOBHm_Chr1g0356771 RchiOBHm_Chr1g0356781 RchiOBHm_Chr1g0375691 RchiOBHm_Chr2g0089631 RchiOBHm_Chr4g0418871 |
| rosa_laevigata | RLG00000011901 RLG00000028084 |
| rosa_multiflora | Rmu_co8104928.1_g000001 Rmu_co8368077.1_g000001 Rmu_sc0000517.1_g000030 Rmu_sc0000935.1_g000021 Rmu_sc0002219.1_g000014 Rmu_sc0005718.1_g000009 |
| rosa_roxburghii | Rroxscaffold_4G00299370 |
| rosa_rugosa | Rorug01G0251100 |
| rosa_samantha | Rh1AG265300 Rh1AG265400 Rh1BG232700 Rh1BG232800 Rh1CG248800 Rh1CG248900 Rh1DG260300 Rh4BG214000 Rh6AG008500 |
| rosa_wichuraiana | Rw4G018520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1392, 1429 |
| AccBSI | CCGCTC | 1 cut(s) | 453 |
| AccI | GTMKAC | 1 cut(s) | 394 |
| AccII | CGCG | 3 cut(s) | 69, 71, 360 |
| AccIII | TCCGGA | 1 cut(s) | 328 |
| AciI | CCGC | 7 cut(s) | 71, 258, 358, 360, 413, 453, 907 |
| AclI | AACGTT | 2 cut(s) | 147, 925 |
| AclWI | GGATC | 2 cut(s) | 537, 1439 |
| AcsI | RAATTY | 3 cut(s) | 138, 274, 571 |
| AcuI | CTGAAG | 2 cut(s) | 1137, 1608 |
| AcvI | CACGTG | 1 cut(s) | 10 |
| AfaI | GTAC | 6 cut(s) | 673, 757, 981, 1076, 1617, 1634 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1257 |
| AflIII | ACRYGT | 1 cut(s) | 768 |
| AgsI | TTSAA | 7 cut(s) | 274, 436, 491, 526, 570, 604, 890 |
| AjiI | CACGTC | 1 cut(s) | 94 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 576, 608 |
| AluBI | AGCT | 7 cut(s) | 893, 966, 1196, 1391, 1525, 1652, 1665 |
| AluI | AGCT | 7 cut(s) | 893, 966, 1196, 1391, 1525, 1652, 1665 |
| Alw26I | GTCTC | 3 cut(s) | 9, 1373, 1568 |
| AlwI | GGATC | 2 cut(s) | 537, 1439 |
| Aor13HI | TCCGGA | 1 cut(s) | 328 |
| AoxI | GGCC | 3 cut(s) | 12, 588, 1300 |
| ApeKI | GCWGC | 3 cut(s) | 651, 871, 1514 |
| ApoI | RAATTY | 3 cut(s) | 138, 274, 571 |
| AseI | ATTAAT | 1 cut(s) | 1319 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 915 |
| AspLEI | GCGC | 1 cut(s) | 71 |
| AspS9I | GGNCC | 2 cut(s) | 326, 588 |
| AsuC2I | CCSGG | 1 cut(s) | 1656 |
| AsuHPI | GGTGA | 2 cut(s) | 427, 806 |
| AvaII | GGWCC | 1 cut(s) | 326 |
| BaeGI | GKGCMC | 2 cut(s) | 37, 93 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1624, 1657 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1081, 1113 |
| BbrPI | CACGTG | 1 cut(s) | 10 |
| BbsI | GAAGAC | 1 cut(s) | 592 |
| BbvI | GCAGC | 3 cut(s) | 663, 883, 1501 |
| BccI | CCATC | 2 cut(s) | 326, 991 |
| BclI | TGATCA | 1 cut(s) | 1642 |
| BcnI | CCSGG | 1 cut(s) | 1656 |
| BcoDI | GTCTC | 3 cut(s) | 9, 1373, 1568 |
| BfaI | CTAG | 2 cut(s) | 1139, 1684 |
| BfmI | CTRYAG | 2 cut(s) | 253, 1515 |
| BisI | GCNGC | 3 cut(s) | 652, 872, 1515 |
| BlsI | GCNGC | 3 cut(s) | 653, 873, 1516 |
| BmcAI | AGTACT | 1 cut(s) | 673 |
| Bme1390I | CCNGG | 1 cut(s) | 1656 |
| Bme18I | GGWCC | 1 cut(s) | 326 |
| BmgBI | CACGTC | 1 cut(s) | 94 |
| BmgT120I | GGNCC | 2 cut(s) | 326, 588 |
| BmiI | GGNNCC | 1 cut(s) | 1034 |
| BmrFI | CCNGG | 1 cut(s) | 1656 |
| BmrI | ACTGGG | 3 cut(s) | 65, 249, 1606 |
| BmsI | GCATC | 4 cut(s) | 484, 787, 805, 1112 |
| BmuI | ACTGGG | 3 cut(s) | 65, 249, 1606 |
| BpiI | GAAGAC | 1 cut(s) | 592 |
| BpmI | CTGGAG | 1 cut(s) | 13 |
| BpuMI | CCSGG | 1 cut(s) | 1656 |
| BsaAI | YACGTR | 1 cut(s) | 10 |
| BsaBI | GATNNNNATC | 2 cut(s) | 171, 1332 |
| BsaJI | CCNNGG | 2 cut(s) | 358, 1177 |
| BsaWI | WCCGGW | 1 cut(s) | 328 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1275, 1305 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1257 |
| Bse1I | ACTGG | 5 cut(s) | 30, 60, 244, 753, 1601 |
| Bse3DI | GCAATG | 2 cut(s) | 237, 825 |
| Bse8I | GATNNNNATC | 2 cut(s) | 171, 1332 |
| BseAI | TCCGGA | 1 cut(s) | 328 |
| BseDI | CCNNGG | 2 cut(s) | 358, 1177 |
| BseGI | GGATG | 4 cut(s) | 337, 385, 640, 1408 |
| BseJI | GATNNNNATC | 2 cut(s) | 171, 1332 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1257 |
| BseMI | GCAATG | 2 cut(s) | 237, 825 |
| BseMII | CTCAG | 2 cut(s) | 673, 1214 |
| BseNI | ACTGG | 5 cut(s) | 30, 60, 244, 753, 1601 |
| BseSI | GKGCMC | 2 cut(s) | 37, 93 |
| BseXI | GCAGC | 3 cut(s) | 663, 883, 1501 |
| Bsh1236I | CGCG | 3 cut(s) | 69, 71, 360 |
| BshFI | GGCC | 3 cut(s) | 14, 590, 1302 |
| BsiSI | CCGG | 2 cut(s) | 329, 1656 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1257 |
| BsmAI | GTCTC | 3 cut(s) | 9, 1373, 1568 |
| BsmI | GAATGC | 4 cut(s) | 232, 702, 1172, 1463 |
| BsnI | GGCC | 3 cut(s) | 14, 590, 1302 |
| Bsp1286I | GDGCHC | 2 cut(s) | 37, 93 |
| Bsp13I | TCCGGA | 1 cut(s) | 328 |
| Bsp143I | GATC | 3 cut(s) | 529, 1444, 1642 |
| Bsp19I | CCATGG | 1 cut(s) | 1177 |
| BspACI | CCGC | 7 cut(s) | 71, 258, 358, 360, 413, 453, 907 |
| BspANI | GGCC | 3 cut(s) | 14, 590, 1302 |
| BspCNI | CTCAG | 2 cut(s) | 672, 1213 |
| BspEI | TCCGGA | 1 cut(s) | 328 |
| BspFNI | CGCG | 3 cut(s) | 69, 71, 360 |
| BspHI | TCATGA | 1 cut(s) | 265 |
| BspLI | GGNNCC | 1 cut(s) | 1034 |
| BspMAI | CTGCAG | 1 cut(s) | 1519 |
| BspPI | GGATC | 2 cut(s) | 537, 1439 |
| BsrBI | CCGCTC | 1 cut(s) | 453 |
| BsrDI | GCAATG | 2 cut(s) | 237, 825 |
| BsrI | ACTGG | 5 cut(s) | 30, 60, 244, 753, 1601 |
| BssECI | CCNNGG | 2 cut(s) | 358, 1177 |
| BssMI | GATC | 3 cut(s) | 529, 1444, 1642 |
| BssT1I | CCWWGG | 1 cut(s) | 1177 |
| Bst4CI | ACNGT | 3 cut(s) | 123, 254, 726 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 503 |
| BstBAI | YACGTR | 1 cut(s) | 10 |
| BstC8I | GCNNGC | 3 cut(s) | 802, 955, 1667 |
| BstDEI | CTNAG | 2 cut(s) | 659, 1200 |
| BstDSI | CCRYGG | 2 cut(s) | 358, 1177 |
| BstF5I | GGATG | 4 cut(s) | 337, 385, 640, 1408 |
| BstFNI | CGCG | 3 cut(s) | 69, 71, 360 |
| BstHHI | GCGC | 1 cut(s) | 71 |
| BstKTI | GATC | 3 cut(s) | 532, 1447, 1645 |
| BstMAI | GTCTC | 3 cut(s) | 9, 1373, 1568 |
| BstMBI | GATC | 3 cut(s) | 529, 1444, 1642 |
| BstNSI | RCATGY | 3 cut(s) | 669, 772, 1275 |
| BstSCI | CCNGG | 1 cut(s) | 1654 |
| BstSFI | CTRYAG | 2 cut(s) | 253, 1515 |
| BstSLI | GKGCMC | 2 cut(s) | 37, 93 |
| BstUI | CGCG | 3 cut(s) | 69, 71, 360 |
| BstV1I | GCAGC | 3 cut(s) | 663, 883, 1501 |
| BstV2I | GAAGAC | 1 cut(s) | 592 |
| BsuRI | GGCC | 3 cut(s) | 14, 590, 1302 |
| BtgI | CCRYGG | 2 cut(s) | 358, 1177 |
| BtrI | CACGTC | 1 cut(s) | 94 |
| BtsCI | GGATG | 4 cut(s) | 337, 385, 640, 1408 |
| BtsI | GCAGTG | 1 cut(s) | 718 |
| BtsIMutI | CAGTG | 4 cut(s) | 37, 667, 718, 1594 |
| Cac8I | GCNNGC | 3 cut(s) | 802, 955, 1667 |
| CciI | TCATGA | 1 cut(s) | 265 |
| CfoI | GCGC | 1 cut(s) | 71 |
| Cfr13I | GGNCC | 2 cut(s) | 326, 588 |
| Cfr42I | CCGCGG | 1 cut(s) | 361 |
| Csp6I | GTAC | 6 cut(s) | 672, 756, 980, 1075, 1616, 1633 |
| CviQI | GTAC | 6 cut(s) | 672, 756, 980, 1075, 1616, 1633 |
| DdeI | CTNAG | 2 cut(s) | 659, 1200 |
| DpnI | GATC | 3 cut(s) | 531, 1446, 1644 |
| DpnII | GATC | 3 cut(s) | 529, 1444, 1642 |
| DraI | TTTAAA | 2 cut(s) | 171, 1315 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1392, 1429 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1392, 1429 |
| Eco130I | CCWWGG | 1 cut(s) | 1177 |
| Eco147I | AGGCCT | 1 cut(s) | 1302 |
| Eco47I | GGWCC | 1 cut(s) | 326 |
| Eco57I | CTGAAG | 2 cut(s) | 1137, 1608 |
| Eco72I | CACGTG | 1 cut(s) | 10 |
| EcoO109I | RGGNCCY | 1 cut(s) | 588 |
| EcoT14I | CCWWGG | 1 cut(s) | 1177 |
| EcoT22I | ATGCAT | 1 cut(s) | 1174 |
| ErhI | CCWWGG | 1 cut(s) | 1177 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 490, 522 |
| FauI | CCCGC | 2 cut(s) | 64, 900 |
| FbaI | TGATCA | 1 cut(s) | 1642 |
| FblI | GTMKAC | 1 cut(s) | 394 |
| Fnu4HI | GCNGC | 3 cut(s) | 652, 872, 1515 |
| FokI | GGATG | 4 cut(s) | 344, 392, 647, 1415 |
| Fsp4HI | GCNGC | 3 cut(s) | 652, 872, 1515 |
| FspBI | CTAG | 2 cut(s) | 1139, 1684 |
| GlaI | GCGC | 1 cut(s) | 70 |
| GluI | GCNGC | 3 cut(s) | 652, 872, 1515 |
| GsuI | CTGGAG | 1 cut(s) | 13 |
| HaeIII | GGCC | 3 cut(s) | 14, 590, 1302 |
| HapII | CCGG | 2 cut(s) | 329, 1656 |
| HhaI | GCGC | 1 cut(s) | 71 |
| Hin6I | GCGC | 1 cut(s) | 69 |
| HinP1I | GCGC | 1 cut(s) | 69 |
| HincII | GTYRAC | 3 cut(s) | 250, 766, 1221 |
| HindII | GTYRAC | 3 cut(s) | 250, 766, 1221 |
| HindIII | AAGCTT | 1 cut(s) | 1523 |
| HinfI | GANTC | 2 cut(s) | 703, 1349 |
| HpaI | GTTAAC | 2 cut(s) | 250, 1221 |
| HpaII | CCGG | 2 cut(s) | 329, 1656 |
| HphI | GGTGA | 2 cut(s) | 427, 806 |
| Hpy166II | GTNNAC | 9 cut(s) | 151, 250, 395, 642, 689, 758, 766, 945, 1221 |
| Hpy188I | TCNGA | 3 cut(s) | 1203, 1354, 1647 |
| Hpy188III | TCNNGA | 6 cut(s) | 266, 329, 829, 920, 935, 1346 |
| Hpy8I | GTNNAC | 9 cut(s) | 151, 250, 395, 642, 689, 758, 766, 945, 1221 |
| HpyAV | CCTTC | 4 cut(s) | 178, 1313, 1388, 1583 |
| HpyCH4III | ACNGT | 3 cut(s) | 123, 254, 726 |
| HpyCH4IV | ACGT | 6 cut(s) | 9, 93, 147, 153, 644, 925 |
| HpyF3I | CTNAG | 2 cut(s) | 659, 1200 |
| HpySE526I | ACGT | 6 cut(s) | 9, 93, 147, 153, 644, 925 |
| HspAI | GCGC | 1 cut(s) | 69 |
| Kpn2I | TCCGGA | 1 cut(s) | 328 |
| Ksp22I | TGATCA | 1 cut(s) | 1642 |
| KspAI | GTTAAC | 2 cut(s) | 250, 1221 |
| KspI | CCGCGG | 1 cut(s) | 361 |
| Kzo9I | GATC | 3 cut(s) | 529, 1444, 1642 |
| LmnI | GCTCC | 4 cut(s) | 32, 450, 1460, 1657 |
| Lsp1109I | GCAGC | 3 cut(s) | 663, 883, 1501 |
| LweI | GCATC | 4 cut(s) | 484, 787, 805, 1112 |
| MaeI | CTAG | 2 cut(s) | 1139, 1684 |
| MaeII | ACGT | 6 cut(s) | 9, 93, 147, 153, 644, 925 |
| MaeIII | GTNAC | 4 cut(s) | 785, 1123, 1141, 1592 |
| MalI | GATC | 3 cut(s) | 531, 1446, 1644 |
| MbiI | CCGCTC | 1 cut(s) | 453 |
| MboI | GATC | 3 cut(s) | 529, 1444, 1642 |
| MboII | GAAGA | 2 cut(s) | 503, 592 |
| MfeI | CAATTG | 2 cut(s) | 1050, 1636 |
| MhlI | GDGCHC | 2 cut(s) | 37, 93 |
| MmeI | TCCRAC | 1 cut(s) | 597 |
| MnlI | CCTC | 9 cut(s) | 47, 314, 606, 613, 1277, 1399, 1435, 1623, 1666 |
| Mph1103I | ATGCAT | 1 cut(s) | 1174 |
| MroI | TCCGGA | 1 cut(s) | 328 |
| MroXI | GAANNNNTTC | 1 cut(s) | 915 |
| MslI | CAYNNNNRTG | 2 cut(s) | 711, 1108 |
| MspA1I | CMGCKG | 1 cut(s) | 360 |
| MspI | CCGG | 2 cut(s) | 329, 1656 |
| MspR9I | CCNGG | 1 cut(s) | 1656 |
| MunI | CAATTG | 2 cut(s) | 1050, 1636 |
| Mva1269I | GAATGC | 4 cut(s) | 232, 702, 1172, 1463 |
| MvnI | CGCG | 3 cut(s) | 69, 71, 360 |
| NciI | CCSGG | 1 cut(s) | 1656 |
| NcoI | CCATGG | 1 cut(s) | 1177 |
| NdeII | GATC | 3 cut(s) | 529, 1444, 1642 |
| NlaIV | GGNNCC | 1 cut(s) | 1034 |
| NmeAIII | GCCGAG | 1 cut(s) | 26 |
| NmuCI | GTSAC | 1 cut(s) | 1592 |
| NsiI | ATGCAT | 1 cut(s) | 1174 |
| NspI | RCATGY | 3 cut(s) | 669, 772, 1275 |
| PagI | TCATGA | 1 cut(s) | 265 |
| PceI | AGGCCT | 1 cut(s) | 1302 |
| PciI | ACATGT | 1 cut(s) | 768 |
| PctI | GAATGC | 4 cut(s) | 232, 702, 1172, 1463 |
| PdmI | GAANNNNTTC | 1 cut(s) | 915 |
| PfeI | GAWTC | 2 cut(s) | 703, 1349 |
| PkrI | GCNGC | 3 cut(s) | 653, 873, 1516 |
| PmaCI | CACGTG | 1 cut(s) | 10 |
| PmlI | CACGTG | 1 cut(s) | 10 |
| Ppu21I | YACGTR | 1 cut(s) | 10 |
| PscI | ACATGT | 1 cut(s) | 768 |
| PshBI | ATTAAT | 1 cut(s) | 1319 |
| Psp1406I | AACGTT | 2 cut(s) | 147, 925 |
| PspCI | CACGTG | 1 cut(s) | 10 |
| PspN4I | GGNNCC | 1 cut(s) | 1034 |
| PspPI | GGNCC | 2 cut(s) | 326, 588 |
| PstI | CTGCAG | 1 cut(s) | 1519 |
| RsaI | GTAC | 6 cut(s) | 673, 757, 981, 1076, 1617, 1634 |
| RsaNI | GTAC | 6 cut(s) | 672, 756, 980, 1075, 1616, 1633 |
| RseI | CAYNNNNRTG | 2 cut(s) | 711, 1108 |
| SacII | CCGCGG | 1 cut(s) | 361 |
| SatI | GCNGC | 3 cut(s) | 652, 872, 1515 |
| Sau3AI | GATC | 3 cut(s) | 529, 1444, 1642 |
| Sau96I | GGNCC | 2 cut(s) | 326, 588 |
| ScaI | AGTACT | 1 cut(s) | 673 |
| ScrFI | CCNGG | 1 cut(s) | 1656 |
| SduI | GDGCHC | 2 cut(s) | 37, 93 |
| SfaNI | GCATC | 4 cut(s) | 484, 787, 805, 1112 |
| SfcI | CTRYAG | 2 cut(s) | 253, 1515 |
| Sfr303I | CCGCGG | 1 cut(s) | 361 |
| SgrBI | CCGCGG | 1 cut(s) | 361 |
| SinI | GGWCC | 1 cut(s) | 326 |
| SmiI | ATTTAAAT | 1 cut(s) | 171 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 711, 1108 |
| SseBI | AGGCCT | 1 cut(s) | 1302 |
| SsiI | CCGC | 7 cut(s) | 71, 258, 358, 360, 413, 453, 907 |
| SspMI | CTAG | 2 cut(s) | 1139, 1684 |
| StuI | AGGCCT | 1 cut(s) | 1302 |
| StyD4I | CCNGG | 1 cut(s) | 1654 |
| StyI | CCWWGG | 1 cut(s) | 1177 |
| SwaI | ATTTAAAT | 1 cut(s) | 171 |
| TaaI | ACNGT | 3 cut(s) | 123, 254, 726 |
| TaiI | ACGT | 6 cut(s) | 12, 96, 150, 156, 647, 928 |
| TaqI | TCGA | 3 cut(s) | 510, 1209, 1427 |
| TatI | WGTACW | 2 cut(s) | 671, 755 |
| TfiI | GAWTC | 2 cut(s) | 703, 1349 |
| TscAI | CASTG | 4 cut(s) | 37, 667, 718, 1601 |
| TseFI | GTSAC | 1 cut(s) | 1592 |
| TseI | GCWGC | 3 cut(s) | 651, 871, 1514 |
| Tsp45I | GTSAC | 1 cut(s) | 1592 |
| TspDTI | ATGAA | 8 cut(s) | 210, 695, 814, 998, 1008, 1035, 1295, 1456 |
| TspGWI | ACGGA | 1 cut(s) | 1257 |
| TspRI | CASTG | 4 cut(s) | 37, 667, 718, 1601 |
| VpaK11BI | GGWCC | 1 cut(s) | 326 |
| VspI | ATTAAT | 1 cut(s) | 1319 |
| XapI | RAATTY | 3 cut(s) | 138, 274, 571 |
| XceI | RCATGY | 3 cut(s) | 669, 772, 1275 |
| XmiI | GTMKAC | 1 cut(s) | 394 |
| XmnI | GAANNNNTTC | 1 cut(s) | 915 |
| XspI | CTAG | 2 cut(s) | 1139, 1684 |
| ZrmI | AGTACT | 1 cut(s) | 673 |
| Zsp2I | ATGCAT | 1 cut(s) | 1174 |