Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000935.1

Orthogroup ID

OG0004368

Physical Location & Seq

Genomic Coordinates Forward (+)

106212 .. 106833

Gene Structure 622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000935.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atggcttctgggtatgtgaaatctggtgacttggacaatgcacgccagatgtttgataaaatgctgagaggttgtgtctcgtatactactatgataatgggtctttctagaaatgggttttggagggaagctgttgaggcttttagggatatgaggaatgccggtagctggcagagtagaagcatgtccatgaaggcagatgttgtgatatggggcacattattggccacaagtacaacacatgggaatctagaaataggagaaatggctgaaaagaatttgaaactgttggatccatctcatggggcaagtacggttctcatgtccaacctacttgcagatgcagggaagtgggaggaagcctctttggaaaggcgagtaatgcagagcctaagactaacgagatcaccagggcacagtgatgttgtttggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

144

Amino Acids

16.05

Weight (kDa)

7.92

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46050
fragaria_vesca	FvH4_7g14820
malus_domestica	MD01G1066700.v1.1 MD11G1207600.v1.1
pyrus_communis	pycom01g09600 pycom01g22640 pycom17g24510
rosa_chinensis	RchiOBHm_Chr1g0356771 RchiOBHm_Chr1g0356781 RchiOBHm_Chr1g0375691 RchiOBHm_Chr2g0089631 RchiOBHm_Chr4g0418871
rosa_laevigata	RLG00000011901 RLG00000028084
rosa_multiflora	Rmu_co8104928.1_g000001 Rmu_co8368077.1_g000001 Rmu_sc0000517.1_g000030 Rmu_sc0000935.1_g000021 Rmu_sc0002219.1_g000014 Rmu_sc0005718.1_g000009
rosa_roxburghii	Rroxscaffold_4G00299370
rosa_rugosa	Rorug01G0251100
rosa_samantha	Rh1AG265300 Rh1AG265400 Rh1BG232700 Rh1BG232800 Rh1CG248800 Rh1CG248900 Rh1DG260300 Rh4BG214000 Rh6AG008500
rosa_wichuraiana	Rw4G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	302
AccI	GTMKAC	1 cut(s)	83
AclWI	GGATC	2 cut(s)	287, 300
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	277
AfaI	GTAC	2 cut(s)	235, 313
AfiI	CCNNNNNNNGG	2 cut(s)	168, 302
AgsI	TTSAA	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	409
AjuI	GAANNNNNNNTTGG	2 cut(s)	103, 135
AluBI	AGCT	2 cut(s)	131, 168
AluI	AGCT	2 cut(s)	131, 168
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	2 cut(s)	287, 300
AoxI	GGCC	1 cut(s)	225
ApoI	RAATTY	1 cut(s)	277
AsuHPI	GGTGA	2 cut(s)	38, 399
BaeGI	GKGCMC	2 cut(s)	218, 417
BalI	TGGCCA	1 cut(s)	227
BamHI	GGATCC	1 cut(s)	292
BccI	CCATC	1 cut(s)	304
BciT130I	CCWGG	1 cut(s)	411
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	2 cut(s)	108, 251
Bme1390I	CCNGG	1 cut(s)	411
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	411
BmsI	GCATC	1 cut(s)	331
BplI	GAGNNNNNCTC	2 cut(s)	347, 379
BsaJI	CCNNGG	1 cut(s)	410
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 302
Bse118I	RCCGGY	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	410
BseLI	CCNNNNNNNGG	2 cut(s)	168, 302
BseMII	CTCAG	1 cut(s)	56
BseSI	GKGCMC	2 cut(s)	218, 417
BshFI	GGCC	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	162
BslI	CCNNNNNNNGG	2 cut(s)	168, 302
BsmAI	GTCTC	1 cut(s)	82
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	227
Bsp1286I	GDGCHC	2 cut(s)	218, 417
Bsp143I	GATC	2 cut(s)	292, 404
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	294
BspPI	GGATC	2 cut(s)	287, 300
BsrFI	RCCGGY	1 cut(s)	161
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	410
BssMI	GATC	2 cut(s)	292, 404
BssNAI	GTATAC	1 cut(s)	84
Bst1107I	GTATAC	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	3 cut(s)	288, 316, 419
BstC8I	GCNNGC	2 cut(s)	43, 170
BstDEI	CTNAG	2 cut(s)	65, 392
BstKTI	GATC	2 cut(s)	295, 407
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	2 cut(s)	292, 404
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 382
BstNI	CCWGG	1 cut(s)	411
BstNSI	RCATGY	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	409
BstSLI	GKGCMC	2 cut(s)	218, 417
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BstZ17I	GTATAC	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	424
Cac8I	GCNNGC	2 cut(s)	43, 170
Cfr10I	RCCGGY	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	234, 312
CviAII	CATG	5 cut(s)	184, 190, 242, 302, 322
CviJI	RGCY	8 cut(s)	5, 131, 140, 168, 227, 269, 362, 390
CviKI_1	RGCY	8 cut(s)	5, 131, 140, 168, 227, 269, 362, 390
CviQI	GTAC	2 cut(s)	234, 312
DdeI	CTNAG	2 cut(s)	65, 392
DpnI	GATC	2 cut(s)	294, 406
DpnII	GATC	2 cut(s)	292, 404
EaeI	YGGCCR	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	409
FaeI	CATG	5 cut(s)	187, 193, 245, 305, 325
FatI	CATG	5 cut(s)	183, 189, 241, 301, 321
FblI	GTMKAC	1 cut(s)	83
FspBI	CTAG	2 cut(s)	108, 251
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	1 cut(s)	162
Hin1II	CATG	5 cut(s)	187, 193, 245, 305, 325
HinfI	GANTC	1 cut(s)	247
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	2 cut(s)	38, 399
Hpy166II	GTNNAC	1 cut(s)	84
Hpy188III	TCNNGA	2 cut(s)	108, 251
Hpy8I	GTNNAC	1 cut(s)	84
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	3 cut(s)	288, 316, 419
HpyCH4V	TGCA	4 cut(s)	41, 338, 344, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 382
HpyF3I	CTNAG	2 cut(s)	65, 392
Hsp92II	CATG	5 cut(s)	187, 193, 245, 305, 325
Kzo9I	GATC	2 cut(s)	292, 404
LpnPI	CCDG	7 cut(s)	9, 59, 154, 175, 330, 396, 423
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	2 cut(s)	108, 251
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	2 cut(s)	294, 406
MboI	GATC	2 cut(s)	292, 404
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	2 cut(s)	218, 417
MlsI	TGGCCA	1 cut(s)	227
MluCI	AATT	1 cut(s)	277
MluNI	TGGCCA	1 cut(s)	227
MmeI	TCCRAC	2 cut(s)	270, 351
MnlI	CCTC	6 cut(s)	62, 117, 130, 147, 349, 373
Mox20I	TGGCCA	1 cut(s)	227
MscI	TGGCCA	1 cut(s)	227
MslI	CAYNNNNRTG	2 cut(s)	188, 420
Msp20I	TGGCCA	1 cut(s)	227
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	411
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	411
MwoI	GCNNNNNNNGC	2 cut(s)	137, 382
NdeII	GATC	2 cut(s)	292, 404
NlaIII	CATG	5 cut(s)	187, 193, 245, 305, 325
NlaIV	GGNNCC	1 cut(s)	294
NmuCI	GTSAC	1 cut(s)	26
NspI	RCATGY	1 cut(s)	187
PctI	GAATGC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	247
PflMI	CCANNNNNTGG	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	409
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	1 cut(s)	294
PsuI	RGATCY	1 cut(s)	292
RsaI	GTAC	2 cut(s)	235, 313
RsaNI	GTAC	2 cut(s)	234, 312
RseI	CAYNNNNRTG	2 cut(s)	188, 420
Sau3AI	GATC	2 cut(s)	292, 404
ScrFI	CCNGG	1 cut(s)	411
SduI	GDGCHC	2 cut(s)	218, 417
SetI	ASST	4 cut(s)	73, 133, 170, 333
SfaNI	GCATC	1 cut(s)	331
SmiMI	CAYNNNNRTG	2 cut(s)	188, 420
Sse9I	AATT	1 cut(s)	277
SspMI	CTAG	2 cut(s)	108, 251
StyD4I	CCNGG	1 cut(s)	409
TaaI	ACNGT	3 cut(s)	288, 316, 419
TasI	AATT	1 cut(s)	277
TatI	WGTACW	1 cut(s)	233
TfiI	GAWTC	1 cut(s)	247
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	26
TspDTI	ATGAA	1 cut(s)	206
TspRI	CASTG	1 cut(s)	424
Van91I	CCANNNNNTGG	1 cut(s)	302
XapI	RAATTY	1 cut(s)	277
XbaI	TCTAGA	2 cut(s)	107, 250
XceI	RCATGY	1 cut(s)	187
XmiI	GTMKAC	1 cut(s)	83
XspI	CTAG	2 cut(s)	108, 251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.