AT3G02700

NC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003430
Physical Location & Seq
Reverse (-)
581541 .. 582949
1409 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G02700.1

Sequence Viewer

Length: 759 bp
ATGGGATTCCTTTCCAATAAAATCTCCAGAGACGATGTGAAACCAGGCGATCACATCTATTCATGGCGTCAAGCCTACATTTACGCTCATCACGGAATCTATGTAGGTAATGGACAAGTCAACCATTTTACTCGTGGTGATGGTCAAGAGACTGGAACTGGGACTTTCTTGGACAACATCATTGTTAGTTCATCTCATAATCATGGAGACAACCCATGTCCTGATTGTGGAGATCGATCCAATCTTGGCGGTGTTATATCTTCCTGCCTTGAATGTTTCCTTGCCGGAGGTGATCTCTATGTCTTTGAGTACAGTGTTTCCCCTGCTATCTTTCTTGCCAAACCTCGAGGCGGCGTATGCACTATAGCATCTTCAGATCCTCCAGAAGAAGTCATCTATCGAGCAAATTTTCTCTTGCAAAATGGTTTTGGTGTGTACAATGTCTTCAAGAACAACTGTGAAGATTTTGCCATCTATTGCAAAACGGGTTTGCTAGTGGCAAACACCGACGTGGGAAGGAGTGGTCAAGCTGCTTCAATTGTTGCAGCTGCCAGTGTTCTTCTTTCTTCACCACTCAGGTTTGTAGCAGGTTTTGGTGGTTTGGCTGTGGCTGGCTATGGCATGTACTGCACCAGTCGCTTAGTTTCAGATATAGGCATGCGATGGGATGTGAGCAAGGTGCCTGTTGAGAGACTAGTTGCTGATGTGGCTTGTATGTCGGACATGGAAGCTAAACCAGAAGATGAGAAGACTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

252

Amino Acids

27.07

Weight (kDa)

5.17

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 13 - 165 1.7e-31 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 345
Acc36I ACCTGC 1 cut(s) 578
AccB1I GGYRCC 1 cut(s) 679
AciI CCGC 2 cut(s) 249, 351
AclWI GGATC 2 cut(s) 231, 371
AcsI RAATTY 1 cut(s) 406
AcuI CTGAAG 1 cut(s) 357
AcyI GRCGYC 1 cut(s) 67
AfaI GTAC 3 cut(s) 311, 437, 626
AfiI CCNNNNNNNGG 2 cut(s) 227, 350
AgsI TTSAA 3 cut(s) 272, 448, 537
AhlI ACTAGT 1 cut(s) 694
AjiI CACGTC 1 cut(s) 511
AjnI CCWGG 1 cut(s) 43
AleI CACNNNNGTG 1 cut(s) 509
AluBI AGCT 3 cut(s) 530, 548, 731
AluI AGCT 3 cut(s) 530, 548, 731
Alw26I GTCTC 4 cut(s) 24, 143, 201, 685
AlwI GGATC 2 cut(s) 231, 371
Ama87I CYCGRG 1 cut(s) 345
ApeKI GCWGC 3 cut(s) 530, 545, 548
ApoI RAATTY 1 cut(s) 406
AsuHPI GGTGA 3 cut(s) 149, 302, 561
AvaI CYCGRG 1 cut(s) 345
BanI GGYRCC 1 cut(s) 679
BarI GAAGNNNNNNTAC 2 cut(s) 428, 460
BauI CACGAG 1 cut(s) 132
BbsI GAAGAC 2 cut(s) 436, 755
BbvI GCAGC 3 cut(s) 517, 535, 557
BccI CCATC 3 cut(s) 134, 479, 657
BciT130I CCWGG 1 cut(s) 45
BcoDI GTCTC 4 cut(s) 24, 143, 201, 685
BcuI ACTAGT 1 cut(s) 694
BfaI CTAG 2 cut(s) 494, 695
BfmI CTRYAG 1 cut(s) 363
BfuAI ACCTGC 1 cut(s) 578
BisI GCNGC 4 cut(s) 352, 531, 546, 549
BlsI GCNGC 4 cut(s) 353, 532, 547, 550
Bme1390I CCNGG 1 cut(s) 45
BmeT110I CYCGRG 1 cut(s) 345
BmgBI CACGTC 1 cut(s) 511
BmiI GGNNCC 1 cut(s) 681
BmrFI CCNGG 1 cut(s) 45
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 377
BmuI ACTGGG 1 cut(s) 168
BpiI GAAGAC 2 cut(s) 436, 755
BplI GAGNNNNNCTC 2 cut(s) 279, 311
BpmI CTGGAG 2 cut(s) 10, 366
Bsa29I ATCGAT 1 cut(s) 235
BsaHI GRCGYC 1 cut(s) 67
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 350
Bse1I ACTGG 4 cut(s) 157, 163, 552, 633
BseBI CCWGG 1 cut(s) 45
BseCI ATCGAT 1 cut(s) 235
BseGI GGATG 1 cut(s) 673
BseLI CCNNNNNNNGG 2 cut(s) 227, 350
BseMII CTCAG 1 cut(s) 589
BseNI ACTGG 4 cut(s) 157, 163, 552, 633
BseXI GCAGC 3 cut(s) 517, 535, 557
BsgI GTGCAG 1 cut(s) 613
BshNI GGYRCC 1 cut(s) 679
BshVI ATCGAT 1 cut(s) 235
BsiHKCI CYCGRG 1 cut(s) 345
BsiSI CCGG 1 cut(s) 285
BslFI GGGAC 1 cut(s) 175
BslI CCNNNNNNNGG 2 cut(s) 227, 350
BsmAI GTCTC 4 cut(s) 24, 143, 201, 685
BsmBI CGTCTC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 175
BsoBI CYCGRG 1 cut(s) 345
Bsp1407I TGTACA 1 cut(s) 435
Bsp143I GATC 5 cut(s) 49, 232, 236, 292, 376
BspACI CCGC 2 cut(s) 249, 351
BspCNI CTCAG 1 cut(s) 588
BspDI ATCGAT 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 681
BspMI ACCTGC 1 cut(s) 578
BspPI GGATC 2 cut(s) 231, 371
BspT107I GGYRCC 1 cut(s) 679
BsrGI TGTACA 1 cut(s) 435
BsrI ACTGG 4 cut(s) 157, 163, 552, 633
BssMI GATC 5 cut(s) 49, 232, 236, 292, 376
BssNI GRCGYC 1 cut(s) 67
BssSI CACGAG 1 cut(s) 132
Bst2BI CACGAG 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 2 cut(s) 314, 458
BstACI GRCGYC 1 cut(s) 67
BstAPI GCANNNNNTGC 1 cut(s) 627
BstAUI TGTACA 1 cut(s) 435
BstC8I GCNNGC 2 cut(s) 613, 659
BstDEI CTNAG 2 cut(s) 575, 640
BstF5I GGATG 1 cut(s) 673
BstKTI GATC 5 cut(s) 52, 235, 239, 295, 379
BstMAI GTCTC 4 cut(s) 24, 143, 201, 685
BstMBI GATC 5 cut(s) 49, 232, 236, 292, 376
BstMWI GCNNNNNNNGC 4 cut(s) 357, 627, 636, 707
BstNI CCWGG 1 cut(s) 45
BstNSI RCATGY 2 cut(s) 625, 661
BstSCI CCNGG 1 cut(s) 43
BstSFI CTRYAG 1 cut(s) 363
BstV1I GCAGC 3 cut(s) 517, 535, 557
BstV2I GAAGAC 2 cut(s) 436, 755
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
Bsu15I ATCGAT 1 cut(s) 235
BsuTUI ATCGAT 1 cut(s) 235
BtgZI GCGATG 1 cut(s) 676
BtrI CACGTC 1 cut(s) 511
BtsCI GGATG 1 cut(s) 673
BtsIMutI CAGTG 2 cut(s) 319, 559
BveI ACCTGC 1 cut(s) 578
Cac8I GCNNGC 2 cut(s) 613, 659
ClaI ATCGAT 1 cut(s) 235
CseI GACGC 1 cut(s) 56
Csp6I GTAC 3 cut(s) 310, 436, 625
CviAII CATG 6 cut(s) 63, 203, 216, 622, 658, 724
CviJI RGCY 8 cut(s) 74, 530, 548, 605, 611, 615, 710, 731
CviKI_1 RGCY 8 cut(s) 74, 530, 548, 605, 611, 615, 710, 731
CviQI GTAC 3 cut(s) 310, 436, 625
DdeI CTNAG 2 cut(s) 575, 640
DpnI GATC 5 cut(s) 51, 234, 238, 294, 378
DpnII GATC 5 cut(s) 49, 232, 236, 292, 376
Eco57I CTGAAG 1 cut(s) 357
Eco88I CYCGRG 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 43
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 6 cut(s) 66, 206, 219, 625, 661, 727
FaqI GGGAC 1 cut(s) 175
FatI CATG 6 cut(s) 62, 202, 215, 621, 657, 723
Fnu4HI GCNGC 4 cut(s) 352, 531, 546, 549
FokI GGATG 1 cut(s) 680
Fsp4HI GCNGC 4 cut(s) 352, 531, 546, 549
FspBI CTAG 2 cut(s) 494, 695
GluI GCNGC 4 cut(s) 352, 531, 546, 549
GsuI CTGGAG 2 cut(s) 10, 366
HapII CCGG 1 cut(s) 285
HgaI GACGC 1 cut(s) 56
Hin1I GRCGYC 1 cut(s) 67
Hin1II CATG 6 cut(s) 66, 206, 219, 625, 661, 727
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 2 cut(s) 6, 96
HpaII CCGG 1 cut(s) 285
HphI GGTGA 3 cut(s) 149, 302, 561
Hpy166II GTNNAC 2 cut(s) 121, 436
Hpy188I TCNGA 3 cut(s) 376, 649, 721
Hpy188III TCNNGA 5 cut(s) 27, 146, 221, 383, 448
Hpy8I GTNNAC 2 cut(s) 121, 436
Hpy99I CGWCG 1 cut(s) 512
HpyAV CCTTC 1 cut(s) 510
HpyCH4III ACNGT 2 cut(s) 314, 458
HpyCH4IV ACGT 1 cut(s) 510
HpyCH4V TGCA 5 cut(s) 360, 418, 480, 545, 630
HpyF10VI GCNNNNNNNGC 4 cut(s) 357, 627, 636, 707
HpyF3I CTNAG 2 cut(s) 575, 640
HpySE526I ACGT 1 cut(s) 510
Hsp92I GRCGYC 1 cut(s) 67
Hsp92II CATG 6 cut(s) 66, 206, 219, 625, 661, 727
Kzo9I GATC 5 cut(s) 49, 232, 236, 292, 376
Lsp1109I GCAGC 3 cut(s) 517, 535, 557
LweI GCATC 1 cut(s) 377
MaeI CTAG 2 cut(s) 494, 695
MaeII ACGT 1 cut(s) 510
MalI GATC 5 cut(s) 51, 234, 238, 294, 378
MboI GATC 5 cut(s) 49, 232, 236, 292, 376
MboII GAAGA 8 cut(s) 252, 363, 398, 436, 473, 551, 558, 752
MfeI CAATTG 1 cut(s) 537
MflI RGATCY 1 cut(s) 376
MluCI AATT 2 cut(s) 406, 537
MmeI TCCRAC 1 cut(s) 699
MnlI CCTC 4 cut(s) 281, 341, 354, 390
MseI TTAA 1 cut(s) 757
MslI CAYNNNNRTG 2 cut(s) 201, 509
MspA1I CMGCKG 1 cut(s) 548
MspI CCGG 1 cut(s) 285
MspR9I CCNGG 1 cut(s) 45
MunI CAATTG 1 cut(s) 537
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 4 cut(s) 357, 627, 636, 707
NdeII GATC 5 cut(s) 49, 232, 236, 292, 376
NlaIII CATG 6 cut(s) 66, 206, 219, 625, 661, 727
NlaIV GGNNCC 1 cut(s) 681
NspI RCATGY 2 cut(s) 625, 661
OliI CACNNNNGTG 1 cut(s) 509
PaeI GCATGC 1 cut(s) 661
PaeR7I CTCGAG 1 cut(s) 345
PfeI GAWTC 2 cut(s) 6, 96
PkrI GCNGC 4 cut(s) 353, 532, 547, 550
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 681
PspXI VCTCGAGB 1 cut(s) 345
PsuI RGATCY 1 cut(s) 376
PvuII CAGCTG 1 cut(s) 548
RsaI GTAC 3 cut(s) 311, 437, 626
RsaNI GTAC 3 cut(s) 310, 436, 625
RseI CAYNNNNRTG 2 cut(s) 201, 509
SaqAI TTAA 1 cut(s) 757
SatI GCNGC 4 cut(s) 352, 531, 546, 549
Sau3AI GATC 5 cut(s) 49, 232, 236, 292, 376
ScrFI CCNGG 1 cut(s) 45
SfaNI GCATC 1 cut(s) 377
SfcI CTRYAG 1 cut(s) 363
Sfr274I CTCGAG 1 cut(s) 345
SlaI CTCGAG 1 cut(s) 345
SmiMI CAYNNNNRTG 2 cut(s) 201, 509
SmlI CTYRAG 1 cut(s) 345
SmoI CTYRAG 1 cut(s) 345
SpeI ACTAGT 1 cut(s) 694
SphI GCATGC 1 cut(s) 661
Sse9I AATT 2 cut(s) 406, 537
SsiI CCGC 2 cut(s) 249, 351
SspMI CTAG 2 cut(s) 494, 695
StyD4I CCNGG 1 cut(s) 43
TaaI ACNGT 2 cut(s) 314, 458
TaiI ACGT 1 cut(s) 513
TaqI TCGA 3 cut(s) 235, 346, 400
TasI AATT 2 cut(s) 406, 537
TatI WGTACW 3 cut(s) 309, 435, 624
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 2 cut(s) 6, 96
Tru1I TTAA 1 cut(s) 757
Tru9I TTAA 1 cut(s) 757
TscAI CASTG 2 cut(s) 319, 559
TseI GCWGC 3 cut(s) 530, 545, 548
TspDTI ATGAA 2 cut(s) 51, 180
TspGWI ACGGA 1 cut(s) 108
TspRI CASTG 2 cut(s) 319, 559
XapI RAATTY 1 cut(s) 406
XceI RCATGY 2 cut(s) 625, 661
XcmI CCANNNNNNNNNTGG 1 cut(s) 131
XhoI CTCGAG 1 cut(s) 345
XspI CTAG 2 cut(s) 494, 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.