Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012412.1

Orthogroup ID

OG0003430

Physical Location & Seq

Genomic Coordinates Forward (+)

96231 .. 99881

Gene Structure 3651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012412.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

atgaatcagaattgggtcttcggaattcattcccatttgcagaaatcgaaatcgaaagcaatgggtgtgctgtcaaacaagatcgacagggatcaactcaaacctggtgatcatatctatacatggagaaacgcctacctctatgcccatcacgggatatatgtcggtgagggaaaggttatccacttcactcgggcagctgggcgggaaattggcacaggaactgtgttagaccgtttcattttcagctcatctccatcccattcttcagagaatccctgcacgaattgcgatgatccatcagggcgtgatggcggtgtcatgtcttcttgcctagattgttttctgtctggtggtgatctgtaccgctttgaatatggtgtcaatccagctttctttattgccaaagccagaggaggtacctgtacccttgcctcatctgacccatctgaagatgtccttcaccgtgcctttttccttctccagaatggttttgggagctactgccttttcaaaaacaattgtgaagactttgcaatttattgcaaaacaggtttgcttgtgaaaagtagcactagtttgggaaggagtgggcaggcatcctccggtttctcttttgcaggtgttgcaagtggtattggtgttgcagcaggttcgtcagctcgatatttgccgattgtgggtttcggtgctttcagtggtctgggtgctgctttcggtgttggaatttattcttaccagcgattaacttatgatattggattccgcagtgatgtttcaaaagtgccagtggaggaactctggactatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRAT

Protein Analysis

270

Amino Acids

29.11

Weight (kDa)

8.08

Isoelectric Point (pI)

32.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02700
fragaria_vesca	FvH4_1g27210 FvH4_1g27210 FvH4_1g27240 FvH4_1g27240
malus_domestica	MD09G1282900.v1.1 MD17G1272600.v1.1
prunus_persica	Prupe.3G011400_v2.0.a1
pyrus_communis	pycom09g19080 pycom17g27140
rosa_chinensis	RchiOBHm_Chr3g0487631 RchiOBHm_Chr3g0487641 RchiOBHm_Chr3g0487651
rosa_laevigata	RLG00000022986 RLG00000022987 RLG00000022991 RLG00000022994
rosa_multiflora	Rmu_sc0002995.1_g000025 Rmu_sc0012412.1_g000016 Rmu_sc0012412.1_g000021
rosa_roxburghii	Rroxscaffold_6G00394620 Rroxscaffold_6G00394630 Rroxscaffold_6G00394640
rosa_rugosa	Rorug03G0235100 Rorug03G0235200
rosa_samantha	Rh3AG283500 Rh3AG283600 Rh3BG319900 Rh3BG320000 Rh3BG320100 Rh3CG317700 Rh3DG315600 Rh3DG315800
rosa_wichuraiana	Rw3G025060 Rw3G025070 Rw3G025080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	611
Acc36I	ACCTGC	2 cut(s)	611, 641
Acc65I	GGTACC	1 cut(s)	419
AccB1I	GGYRCC	1 cut(s)	419
AciI	CCGC	4 cut(s)	205, 315, 367, 766
AclWI	GGATC	2 cut(s)	99, 290
AcsI	RAATTY	2 cut(s)	24, 726
AcuI	CTGAAG	2 cut(s)	252, 471
AfaI	GTAC	3 cut(s)	365, 421, 427
AfiI	CCNNNNNNNGG	2 cut(s)	153, 680
AgsI	TTSAA	3 cut(s)	374, 514, 780
AhlI	ACTAGT	1 cut(s)	575
AjnI	CCWGG	1 cut(s)	103
AluBI	AGCT	5 cut(s)	200, 249, 392, 501, 662
AluI	AGCT	5 cut(s)	200, 249, 392, 501, 662
AlwI	GGATC	2 cut(s)	99, 290
AlwNI	CAGNNNCTG	1 cut(s)	224
Ama87I	CYCGRG	1 cut(s)	192
ApeKI	GCWGC	3 cut(s)	197, 647, 710
ApoI	RAATTY	2 cut(s)	24, 726
Asp700I	GAANNNNTTC	2 cut(s)	28, 730
Asp718I	GGTACC	1 cut(s)	419
AsuHPI	GGTGA	4 cut(s)	119, 179, 368, 455
AvaI	CYCGRG	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	419
BbsI	GAAGAC	3 cut(s)	10, 318, 534
BbvI	GCAGC	3 cut(s)	209, 659, 697
BccI	CCATC	5 cut(s)	156, 265, 305, 307, 454
BcgI	CGANNNNNNTGC	2 cut(s)	636, 670
BciT130I	CCWGG	1 cut(s)	105
BclI	TGATCA	1 cut(s)	109
BcuI	ACTAGT	1 cut(s)	575
BfaI	CTAG	2 cut(s)	335, 576
BfuAI	ACCTGC	2 cut(s)	611, 641
BisI	GCNGC	3 cut(s)	198, 648, 711
BlsI	GCNGC	3 cut(s)	199, 649, 712
Bme1390I	CCNGG	1 cut(s)	105
BmeT110I	CYCGRG	1 cut(s)	192
BmiI	GGNNCC	1 cut(s)	421
BmrFI	CCNGG	1 cut(s)	105
BmsI	GCATC	1 cut(s)	608
BpiI	GAAGAC	3 cut(s)	10, 318, 534
BpmI	CTGGAG	1 cut(s)	467
BsaWI	WCCGGW	1 cut(s)	605
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 680
Bse1I	ACTGG	1 cut(s)	788
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	105
BseGI	GGATG	2 cut(s)	257, 599
BseLI	CCNNNNNNNGG	2 cut(s)	153, 680
BseMI	GCAATG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	788
BseRI	GAGGAG	1 cut(s)	429
BseXI	GCAGC	3 cut(s)	209, 659, 697
BseYI	CCCAGC	1 cut(s)	200
BsgI	GTGCAG	1 cut(s)	265
BshNI	GGYRCC	1 cut(s)	419
BsiHKCI	CYCGRG	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	606
BslI	CCNNNNNNNGG	2 cut(s)	153, 680
BsoBI	CYCGRG	1 cut(s)	192
Bsp143I	GATC	5 cut(s)	81, 91, 109, 295, 358
BspACI	CCGC	4 cut(s)	205, 315, 367, 766
BspLI	GGNNCC	1 cut(s)	421
BspMI	ACCTGC	2 cut(s)	611, 641
BspPI	GGATC	2 cut(s)	99, 290
BspT107I	GGYRCC	1 cut(s)	419
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	788
BssMI	GATC	5 cut(s)	81, 91, 109, 295, 358
Bst2UI	CCWGG	1 cut(s)	105
Bst4CI	ACNGT	3 cut(s)	226, 236, 467
BstAPI	GCANNNNNTGC	2 cut(s)	288, 626
BstC8I	GCNNGC	1 cut(s)	597
BstF5I	GGATG	2 cut(s)	257, 599
BstKTI	GATC	5 cut(s)	84, 94, 112, 298, 361
BstMBI	GATC	5 cut(s)	81, 91, 109, 295, 358
BstMWI	GCNNNNNNNGC	2 cut(s)	288, 626
BstNI	CCWGG	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	103
BstV1I	GCAGC	3 cut(s)	209, 659, 697
BstV2I	GAAGAC	3 cut(s)	10, 318, 534
BtgZI	GCGATG	1 cut(s)	306
BtsCI	GGATG	2 cut(s)	257, 599
BtsI	GCAGTG	1 cut(s)	775
BtsIMutI	CAGTG	3 cut(s)	703, 775, 795
BveI	ACCTGC	2 cut(s)	611, 641
Cac8I	GCNNGC	1 cut(s)	597
CaiI	CAGNNNCTG	1 cut(s)	224
CsiI	ACCWGGT	1 cut(s)	103
Csp6I	GTAC	3 cut(s)	364, 420, 426
CviAII	CATG	2 cut(s)	123, 322
CviJI	RGCY	6 cut(s)	200, 249, 392, 410, 501, 662
CviKI_1	RGCY	6 cut(s)	200, 249, 392, 410, 501, 662
CviQI	GTAC	3 cut(s)	364, 420, 426
DpnI	GATC	5 cut(s)	83, 93, 111, 297, 360
DpnII	GATC	5 cut(s)	81, 91, 109, 295, 358
Eco57I	CTGAAG	2 cut(s)	252, 471
Eco88I	CYCGRG	1 cut(s)	192
EcoRI	GAATTC	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	103
FaeI	CATG	2 cut(s)	126, 325
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FatI	CATG	2 cut(s)	122, 321
FauI	CCCGC	1 cut(s)	198
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	3 cut(s)	198, 648, 711
FokI	GGATG	2 cut(s)	244, 586
Fsp4HI	GCNGC	3 cut(s)	198, 648, 711
FspBI	CTAG	2 cut(s)	335, 576
GluI	GCNGC	3 cut(s)	198, 648, 711
GsaI	CCCAGC	1 cut(s)	204
GsuI	CTGGAG	1 cut(s)	467
HapII	CCGG	1 cut(s)	606
Hin1II	CATG	2 cut(s)	126, 325
HinfI	GANTC	3 cut(s)	4, 274, 762
HpaII	CCGG	1 cut(s)	606
HphI	GGTGA	4 cut(s)	119, 179, 368, 455
Hpy188I	TCNGA	5 cut(s)	9, 23, 271, 442, 451
Hpy188III	TCNNGA	2 cut(s)	484, 802
HpyAV	CCTTC	3 cut(s)	470, 488, 579
HpyCH4III	ACNGT	3 cut(s)	226, 236, 467
HpyCH4V	TGCA	7 cut(s)	40, 282, 536, 546, 620, 629, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	288, 626
Hsp92II	CATG	2 cut(s)	126, 325
KpnI	GGTACC	1 cut(s)	423
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	5 cut(s)	81, 91, 109, 295, 358
LmnI	GCTCC	1 cut(s)	498
Lsp1109I	GCAGC	3 cut(s)	209, 659, 697
LweI	GCATC	1 cut(s)	608
MabI	ACCWGGT	1 cut(s)	103
MaeI	CTAG	2 cut(s)	335, 576
MalI	GATC	5 cut(s)	83, 93, 111, 297, 360
MboI	GATC	5 cut(s)	81, 91, 109, 295, 358
MboII	GAAGA	5 cut(s)	10, 258, 318, 464, 539
MfeI	CAATTG	1 cut(s)	520
MluCI	AATT	7 cut(s)	10, 24, 210, 286, 520, 537, 726
MmeI	TCCRAC	1 cut(s)	703
MnlI	CCTC	7 cut(s)	149, 163, 407, 410, 445, 613, 787
MroXI	GAANNNNTTC	2 cut(s)	28, 730
MseI	TTAA	1 cut(s)	746
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	1 cut(s)	606
MspR9I	CCNGG	1 cut(s)	105
MunI	CAATTG	1 cut(s)	520
MvaI	CCWGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	2 cut(s)	288, 626
NdeII	GATC	5 cut(s)	81, 91, 109, 295, 358
NlaIII	CATG	2 cut(s)	126, 325
NlaIV	GGNNCC	1 cut(s)	421
PaqCI	CACCTGC	1 cut(s)	611
PdmI	GAANNNNTTC	2 cut(s)	28, 730
PfeI	GAWTC	3 cut(s)	4, 274, 762
PkrI	GCNGC	3 cut(s)	199, 649, 712
Psp6I	CCWGG	1 cut(s)	103
PspFI	CCCAGC	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	421
PstNI	CAGNNNCTG	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	3 cut(s)	365, 421, 427
RsaNI	GTAC	3 cut(s)	364, 420, 426
SaqAI	TTAA	1 cut(s)	746
SatI	GCNGC	3 cut(s)	198, 648, 711
Sau3AI	GATC	5 cut(s)	81, 91, 109, 295, 358
ScrFI	CCNGG	1 cut(s)	105
SexAI	ACCWGGT	1 cut(s)	103
SfaNI	GCATC	1 cut(s)	608
SpeI	ACTAGT	1 cut(s)	575
Sse9I	AATT	7 cut(s)	10, 24, 210, 286, 520, 537, 726
SsiI	CCGC	4 cut(s)	205, 315, 367, 766
SspMI	CTAG	2 cut(s)	335, 576
StyD4I	CCNGG	1 cut(s)	103
TaaI	ACNGT	3 cut(s)	226, 236, 467
TaqI	TCGA	4 cut(s)	47, 53, 84, 664
TasI	AATT	7 cut(s)	10, 24, 210, 286, 520, 537, 726
TfiI	GAWTC	3 cut(s)	4, 274, 762
Tru1I	TTAA	1 cut(s)	746
Tru9I	TTAA	1 cut(s)	746
TscAI	CASTG	3 cut(s)	703, 775, 795
TseI	GCWGC	3 cut(s)	197, 647, 710
TspDTI	ATGAA	3 cut(s)	17, 17, 229
TspRI	CASTG	3 cut(s)	703, 775, 795
XapI	RAATTY	2 cut(s)	24, 726
XcmI	CCANNNNNNNNNTGG	1 cut(s)	491
XmnI	GAANNNNTTC	2 cut(s)	28, 730
XspI	CTAG	2 cut(s)	335, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.