Rw3G025080

NC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0003430
Physical Location & Seq
Forward (+)
32918435 .. 32922424
3990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G025080.1

Sequence Viewer

Length: 768 bp
ATGGGTTTGCTGTCAAACAAGATCCACAGGGACCAACTCAAACCTGGTGATCATATCTATACATGGAGGAACGCCTACCTCTATGCCCATCACGGGATATATGTTGGTGAGGGAAAGGTAATCCACTTCACTCGGGCGGCTGGGCGGGAAATTGGCACAGGAACTGTGTTAGACCGTTTCATTTTCAGCTCATCTCCATCCCATTCTTCAGAGAATCCCTGCACAAGTTGCGATGATCCATCAGGGCGTGATGGCGGTGTCATGTCTTCTTGCCTAGATTGTTTTCTGTCTGGTGGTGATCTGTACCGCTTTGAATATGGTGTCAATCCAGCTTTCTTTATTGCCAAAGCCAGAGGAGGTACCTGTACCCTTGCCTCATCTGACCCATTTGAAGATGTCCTTCACCGTGCCTTTTTCCTTCTCCAGAATGGTTTTGGGAGCTACTGCCTTTTCAAAAACAATTGTGAAGACTTTGCAATTTATTGCAAAACAGGTTTGCTTGTGTTCACTAGCATTAGTGTGGGAAGGAGTGGGCAGGCAGCCTCCATTTTCTCTGCTGCAAGTGCTATTGCTTGTTCACCGGCTCGATATTTGACTACTACTTTTAGTGGTCTGAGTGCTTTCGGTGCTGGAATTTATTGTCTCCATCGATTGGTTTGTGATATTGGAATCCGCCGTGATGTTTCAAAAGTGCCAGTTGAGAGACTAGTTGATCGGGTAGGCTTCGTCGAGTCGGTGGTTGCAACTGAGATGGTCAAGCGACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

255

Amino Acids

27.77

Weight (kDa)

8.0

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 12 - 167 2.6e-27 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 359
AccB1I GGYRCC 1 cut(s) 359
AccB7I CCANNNNNTGG 1 cut(s) 652
AciI CCGC 5 cut(s) 137, 145, 255, 307, 673
AclWI GGATC 2 cut(s) 16, 230
AcsI RAATTY 1 cut(s) 633
AcuI CTGAAG 1 cut(s) 192
AfaI GTAC 3 cut(s) 305, 361, 367
AfiI CCNNNNNNNGG 2 cut(s) 93, 652
AgsI TTSAA 4 cut(s) 314, 392, 454, 687
AhlI ACTAGT 1 cut(s) 706
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 3 cut(s) 189, 332, 441
AluI AGCT 3 cut(s) 189, 332, 441
Alw26I GTCTC 2 cut(s) 647, 697
AlwI GGATC 2 cut(s) 16, 230
AlwNI CAGNNNCTG 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 132
ApeKI GCWGC 2 cut(s) 539, 557
ApoI RAATTY 1 cut(s) 633
Asp718I GGTACC 1 cut(s) 359
AspS9I GGNCC 1 cut(s) 31
AsuHPI GGTGA 5 cut(s) 59, 119, 308, 395, 570
AvaI CYCGRG 1 cut(s) 132
AvaII GGWCC 1 cut(s) 31
BanI GGYRCC 1 cut(s) 359
BbsI GAAGAC 2 cut(s) 258, 474
BbvI GCAGC 2 cut(s) 544, 551
BccI CCATC 6 cut(s) 96, 205, 245, 247, 654, 745
BceAI ACGGC 1 cut(s) 660
BciT130I CCWGG 1 cut(s) 45
BclI TGATCA 1 cut(s) 49
BcoDI GTCTC 2 cut(s) 647, 697
BcuI ACTAGT 1 cut(s) 706
BfaI CTAG 3 cut(s) 275, 510, 707
BisI GCNGC 3 cut(s) 138, 540, 558
BlsI GCNGC 3 cut(s) 139, 541, 559
Bme1390I CCNGG 1 cut(s) 45
Bme18I GGWCC 1 cut(s) 31
BmeT110I CYCGRG 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 2 cut(s) 32, 361
BmrFI CCNGG 1 cut(s) 45
BpiI GAAGAC 2 cut(s) 258, 474
BpmI CTGGAG 1 cut(s) 407
Bsa29I ATCGAT 1 cut(s) 649
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 652
Bse118I RCCGGY 1 cut(s) 580
Bse1I ACTGG 1 cut(s) 695
BseBI CCWGG 1 cut(s) 45
BseCI ATCGAT 1 cut(s) 649
BseGI GGATG 1 cut(s) 197
BseLI CCNNNNNNNGG 2 cut(s) 93, 652
BseMII CTCAG 2 cut(s) 605, 738
BseNI ACTGG 1 cut(s) 695
BseRI GAGGAG 1 cut(s) 369
BseXI GCAGC 2 cut(s) 544, 551
BseYI CCCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 205
BshNI GGYRCC 1 cut(s) 359
BshVI ATCGAT 1 cut(s) 649
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 1 cut(s) 581
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 2 cut(s) 93, 652
BsmAI GTCTC 2 cut(s) 647, 697
BsmFI GGGAC 1 cut(s) 44
BsoBI CYCGRG 1 cut(s) 132
Bsp143I GATC 5 cut(s) 21, 49, 235, 298, 712
BspACI CCGC 5 cut(s) 137, 145, 255, 307, 673
BspCNI CTCAG 2 cut(s) 606, 739
BspDI ATCGAT 1 cut(s) 649
BspLI GGNNCC 2 cut(s) 32, 361
BspPI GGATC 2 cut(s) 16, 230
BspT107I GGYRCC 1 cut(s) 359
BsrFI RCCGGY 1 cut(s) 580
BsrI ACTGG 1 cut(s) 695
BssAI RCCGGY 1 cut(s) 580
BssMI GATC 5 cut(s) 21, 49, 235, 298, 712
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 4 cut(s) 166, 176, 407, 765
BstAPI GCANNNNNTGC 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 537
BstDEI CTNAG 2 cut(s) 614, 747
BstF5I GGATG 1 cut(s) 197
BstKTI GATC 5 cut(s) 24, 52, 238, 301, 715
BstMAI GTCTC 2 cut(s) 647, 697
BstMBI GATC 5 cut(s) 21, 49, 235, 298, 712
BstMWI GCNNNNNNNGC 3 cut(s) 228, 563, 626
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 43
BstV1I GCAGC 2 cut(s) 544, 551
BstV2I GAAGAC 2 cut(s) 258, 474
BstX2I RGATCY 1 cut(s) 21
BstYI RGATCY 1 cut(s) 21
Bsu15I ATCGAT 1 cut(s) 649
BsuTUI ATCGAT 1 cut(s) 649
BtgZI GCGATG 1 cut(s) 246
BtsCI GGATG 1 cut(s) 197
Cac8I GCNNGC 1 cut(s) 537
CaiI CAGNNNCTG 1 cut(s) 164
Cfr10I RCCGGY 1 cut(s) 580
Cfr13I GGNCC 1 cut(s) 31
ClaI ATCGAT 1 cut(s) 649
CsiI ACCWGGT 1 cut(s) 43
Csp6I GTAC 3 cut(s) 304, 360, 366
CviAII CATG 2 cut(s) 63, 262
CviJI RGCY 8 cut(s) 140, 189, 332, 350, 441, 542, 584, 723
CviKI_1 RGCY 8 cut(s) 140, 189, 332, 350, 441, 542, 584, 723
CviQI GTAC 3 cut(s) 304, 360, 366
DdeI CTNAG 2 cut(s) 614, 747
DpnI GATC 5 cut(s) 23, 51, 237, 300, 714
DpnII GATC 5 cut(s) 21, 49, 235, 298, 712
EciI GGCGGA 1 cut(s) 662
Eco47I GGWCC 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 192
Eco88I CYCGRG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 43
FaeI CATG 2 cut(s) 66, 265
FaiI YATR 8 cut(s) 54, 60, 64, 84, 100, 102, 263, 318
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FaqI GGGAC 1 cut(s) 44
FatI CATG 2 cut(s) 62, 261
FauI CCCGC 1 cut(s) 138
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 3 cut(s) 138, 540, 558
FokI GGATG 1 cut(s) 184
Fsp4HI GCNGC 3 cut(s) 138, 540, 558
FspBI CTAG 3 cut(s) 275, 510, 707
GluI GCNGC 3 cut(s) 138, 540, 558
GsaI CCCAGC 1 cut(s) 144
GsuI CTGGAG 1 cut(s) 407
HapII CCGG 1 cut(s) 581
Hin1II CATG 2 cut(s) 66, 265
HinfI GANTC 3 cut(s) 214, 669, 731
HpaII CCGG 1 cut(s) 581
HphI GGTGA 5 cut(s) 59, 119, 308, 395, 570
Hpy166II GTNNAC 2 cut(s) 507, 578
Hpy188I TCNGA 3 cut(s) 211, 382, 615
Hpy188III TCNNGA 1 cut(s) 424
Hpy8I GTNNAC 2 cut(s) 507, 578
Hpy99I CGWCG 1 cut(s) 731
HpyAV CCTTC 3 cut(s) 410, 428, 519
HpyCH4III ACNGT 4 cut(s) 166, 176, 407, 765
HpyCH4V TGCA 5 cut(s) 222, 476, 486, 560, 743
HpyF10VI GCNNNNNNNGC 3 cut(s) 228, 563, 626
HpyF3I CTNAG 2 cut(s) 614, 747
Hsp92II CATG 2 cut(s) 66, 265
KpnI GGTACC 1 cut(s) 363
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 5 cut(s) 21, 49, 235, 298, 712
LmnI GCTCC 1 cut(s) 438
Lsp1109I GCAGC 2 cut(s) 544, 551
MabI ACCWGGT 1 cut(s) 43
MaeI CTAG 3 cut(s) 275, 510, 707
MalI GATC 5 cut(s) 23, 51, 237, 300, 714
MboI GATC 5 cut(s) 21, 49, 235, 298, 712
MboII GAAGA 4 cut(s) 198, 258, 404, 479
MfeI CAATTG 1 cut(s) 460
MflI RGATCY 1 cut(s) 21
MluCI AATT 4 cut(s) 150, 460, 477, 633
MlyI GAGTC 1 cut(s) 740
MnlI CCTC 7 cut(s) 60, 89, 103, 347, 350, 385, 553
MslI CAYNNNNRTG 1 cut(s) 518
MspI CCGG 1 cut(s) 581
MspR9I CCNGG 1 cut(s) 45
MunI CAATTG 1 cut(s) 460
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 3 cut(s) 228, 563, 626
NdeII GATC 5 cut(s) 21, 49, 235, 298, 712
NlaIII CATG 2 cut(s) 66, 265
NlaIV GGNNCC 2 cut(s) 32, 361
PfeI GAWTC 2 cut(s) 214, 669
PflMI CCANNNNNTGG 1 cut(s) 652
PkrI GCNGC 3 cut(s) 139, 541, 559
PleI GAGTC 1 cut(s) 739
PpsI GAGTC 1 cut(s) 739
Psp6I CCWGG 1 cut(s) 43
PspFI CCCAGC 1 cut(s) 140
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 2 cut(s) 32, 361
PspPI GGNCC 1 cut(s) 31
PstNI CAGNNNCTG 1 cut(s) 164
PsuI RGATCY 1 cut(s) 21
RsaI GTAC 3 cut(s) 305, 361, 367
RsaNI GTAC 3 cut(s) 304, 360, 366
RseI CAYNNNNRTG 1 cut(s) 518
SatI GCNGC 3 cut(s) 138, 540, 558
Sau3AI GATC 5 cut(s) 21, 49, 235, 298, 712
Sau96I GGNCC 1 cut(s) 31
SchI GAGTC 1 cut(s) 740
ScrFI CCNGG 1 cut(s) 45
SetI ASST 9 cut(s) 46, 81, 120, 191, 334, 361, 365, 443, 496
SexAI ACCWGGT 1 cut(s) 43
SinI GGWCC 1 cut(s) 31
SmiMI CAYNNNNRTG 1 cut(s) 518
SpeI ACTAGT 1 cut(s) 706
Sse9I AATT 4 cut(s) 150, 460, 477, 633
SsiI CCGC 5 cut(s) 137, 145, 255, 307, 673
SspMI CTAG 3 cut(s) 275, 510, 707
StyD4I CCNGG 1 cut(s) 43
TaaI ACNGT 4 cut(s) 166, 176, 407, 765
TaqI TCGA 3 cut(s) 586, 649, 729
TasI AATT 4 cut(s) 150, 460, 477, 633
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 2 cut(s) 214, 669
TseI GCWGC 2 cut(s) 539, 557
TspDTI ATGAA 1 cut(s) 169
Van91I CCANNNNNTGG 1 cut(s) 652
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 1 cut(s) 633
XcmI CCANNNNNNNNNTGG 2 cut(s) 41, 431
XspI CTAG 3 cut(s) 275, 510, 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.