FvH4_1g27240

NC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003430
Physical Location & Seq
Reverse (-)
18968293 .. 18973371
5079 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g27240.t2

Sequence Viewer

Length: 768 bp
ATGGGTTTGCTGTCAAACAAGATCGACAGGGACCATCTCAAACCTGGTGATCATATCTATTCATGGAGGAACGCTTACCTCTATGCCCATCACGGGATATATGTCGGTGATGGAAAGGTTATCCACTTCACTCGGGCAGCTGGGCGGGAAATTGGCACAGGAACTGTGTTAGACCGTTTCATTTTCAGCTCATCTCCATCCCATTCATCAGAGAATCCCTGCACTAGTTGTGATGAACCATCGGGGCGTGATGGTGGTGTCATGTCTTCTTGCCTAGACTGTTTTTTGTCCGGTGGCGATCTGTACCTCTTTGAATATGGTGTCAATCCAGCCTTTTTTATTGCCAAAGCCAGAGGAGGTACCTGTACCCTTGCCTCATCTGATCCATCTGAAGATGTCCTTCACCGTGCCTTTTTCCTTCTCCAGAATGGTTTTGGCAGCTACTGCCTTTTCAAAAATAATTGTGAAGACTTTGCAATTTATTGCAAAACAGGTTTGCTTGTGTTTACTAGCCTTAGTGTGGGAAGGAGCGGGCAGGCTGCCTCCATTTTCTCTGCAGCAAGTGCTATTGCTTGTTCACCGGCTCGATATTTGACTACTACTTTTAGTGGTCTGAGTGCTTTCGGTGCTGGAATTTACTGTCTCCACCGATTGGTTTGTGATATTGGAATCCGCCGTGATGTTTCAAAAGTCCCAGTGGAGAGGCTCGTTGATCGGGTTGGCTTAGTGGAGTCAGCGGTTGCAACTGACGTGGTCAAGCAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

256

Amino Acids

27.49

Weight (kDa)

6.43

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 3 - 138 6.7e-21 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 359
AccB1I GGYRCC 1 cut(s) 359
AccB7I CCANNNNNTGG 1 cut(s) 652
AccBSI CCGCTC 1 cut(s) 531
AciI CCGC 4 cut(s) 145, 531, 673, 737
AclWI GGATC 1 cut(s) 377
AcsI RAATTY 1 cut(s) 633
AcuI CTGAAG 1 cut(s) 411
AfaI GTAC 3 cut(s) 305, 361, 367
AfiI CCNNNNNNNGG 3 cut(s) 93, 520, 652
AgsI TTSAA 3 cut(s) 314, 454, 687
AhlI ACTAGT 1 cut(s) 224
AjiI CACGTC 1 cut(s) 751
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 3 cut(s) 140, 189, 441
AluI AGCT 3 cut(s) 140, 189, 441
Alw26I GTCTC 1 cut(s) 647
AlwI GGATC 1 cut(s) 377
AlwNI CAGNNNCTG 2 cut(s) 164, 444
Ama87I CYCGRG 1 cut(s) 132
ApeKI GCWGC 4 cut(s) 137, 438, 539, 557
ApoI RAATTY 1 cut(s) 633
Asp718I GGTACC 1 cut(s) 359
AspS9I GGNCC 1 cut(s) 31
AsuHPI GGTGA 4 cut(s) 59, 119, 395, 570
AvaI CYCGRG 1 cut(s) 132
AvaII GGWCC 1 cut(s) 31
BanI GGYRCC 1 cut(s) 359
BbsI GAAGAC 2 cut(s) 258, 474
BbvI GCAGC 4 cut(s) 149, 450, 526, 569
BccI CCATC 7 cut(s) 42, 96, 104, 205, 245, 247, 394
BceAI ACGGC 1 cut(s) 660
BciT130I CCWGG 1 cut(s) 45
BclI TGATCA 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 647
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 3 cut(s) 225, 275, 510
BfmI CTRYAG 1 cut(s) 555
BisI GCNGC 4 cut(s) 138, 439, 540, 558
BlsI GCNGC 4 cut(s) 139, 440, 541, 559
Bme1390I CCNGG 1 cut(s) 45
Bme18I GGWCC 1 cut(s) 31
BmeT110I CYCGRG 1 cut(s) 132
BmgBI CACGTC 1 cut(s) 751
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 2 cut(s) 32, 361
BmrFI CCNGG 1 cut(s) 45
BmrI ACTGGG 1 cut(s) 689
BmuI ACTGGG 1 cut(s) 689
BpiI GAAGAC 2 cut(s) 258, 474
BpmI CTGGAG 1 cut(s) 407
BsaWI WCCGGW 1 cut(s) 290
Bsc4I CCNNNNNNNGG 3 cut(s) 93, 520, 652
Bse118I RCCGGY 1 cut(s) 580
Bse1I ACTGG 1 cut(s) 695
BseBI CCWGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 197
BseLI CCNNNNNNNGG 3 cut(s) 93, 520, 652
BseMII CTCAG 1 cut(s) 605
BseNI ACTGG 1 cut(s) 695
BseRI GAGGAG 1 cut(s) 369
BseXI GCAGC 4 cut(s) 149, 450, 526, 569
BseYI CCCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 205
BshNI GGYRCC 1 cut(s) 359
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 2 cut(s) 291, 581
BslFI GGGAC 2 cut(s) 44, 677
BslI CCNNNNNNNGG 3 cut(s) 93, 520, 652
BsmAI GTCTC 1 cut(s) 647
BsmFI GGGAC 2 cut(s) 44, 677
BsoBI CYCGRG 1 cut(s) 132
Bsp143I GATC 5 cut(s) 21, 49, 298, 382, 712
BspACI CCGC 4 cut(s) 145, 531, 673, 737
BspCNI CTCAG 1 cut(s) 606
BspLI GGNNCC 2 cut(s) 32, 361
BspMAI CTGCAG 1 cut(s) 559
BspPI GGATC 1 cut(s) 377
BspT107I GGYRCC 1 cut(s) 359
BsrBI CCGCTC 1 cut(s) 531
BsrFI RCCGGY 1 cut(s) 580
BsrI ACTGG 1 cut(s) 695
BssAI RCCGGY 1 cut(s) 580
BssMI GATC 5 cut(s) 21, 49, 298, 382, 712
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 5 cut(s) 166, 176, 281, 407, 641
BstAPI GCANNNNNTGC 2 cut(s) 444, 563
BstC8I GCNNGC 2 cut(s) 533, 537
BstDEI CTNAG 3 cut(s) 515, 614, 724
BstF5I GGATG 1 cut(s) 197
BstKTI GATC 5 cut(s) 24, 52, 301, 385, 715
BstMAI GTCTC 1 cut(s) 647
BstMBI GATC 5 cut(s) 21, 49, 298, 382, 712
BstMWI GCNNNNNNNGC 3 cut(s) 444, 563, 626
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 43
BstSFI CTRYAG 1 cut(s) 555
BstV1I GCAGC 4 cut(s) 149, 450, 526, 569
BstV2I GAAGAC 2 cut(s) 258, 474
BtrI CACGTC 1 cut(s) 751
BtsCI GGATG 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 702
Cac8I GCNNGC 2 cut(s) 533, 537
CaiI CAGNNNCTG 2 cut(s) 164, 444
Cfr10I RCCGGY 1 cut(s) 580
Cfr13I GGNCC 1 cut(s) 31
CsiI ACCWGGT 1 cut(s) 43
Csp6I GTAC 3 cut(s) 304, 360, 366
CspCI CAANNNNNGTGG 2 cut(s) 732, 767
CviAII CATG 2 cut(s) 63, 262
CviQI GTAC 3 cut(s) 304, 360, 366
DdeI CTNAG 3 cut(s) 515, 614, 724
DpnI GATC 5 cut(s) 23, 51, 300, 384, 714
DpnII GATC 5 cut(s) 21, 49, 298, 382, 712
EciI GGCGGA 1 cut(s) 662
Eco47I GGWCC 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 411
Eco88I CYCGRG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 43
FaeI CATG 2 cut(s) 66, 265
FaiI YATR 7 cut(s) 54, 64, 84, 100, 102, 263, 318
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FaqI GGGAC 2 cut(s) 44, 677
FatI CATG 2 cut(s) 62, 261
FauI CCCGC 2 cut(s) 138, 524
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 4 cut(s) 138, 439, 540, 558
FokI GGATG 1 cut(s) 184
Fsp4HI GCNGC 4 cut(s) 138, 439, 540, 558
FspBI CTAG 3 cut(s) 225, 275, 510
GluI GCNGC 4 cut(s) 138, 439, 540, 558
GsaI CCCAGC 1 cut(s) 144
GsuI CTGGAG 1 cut(s) 407
HapII CCGG 2 cut(s) 291, 581
Hin1II CATG 2 cut(s) 66, 265
HinfI GANTC 3 cut(s) 214, 669, 731
HpaII CCGG 2 cut(s) 291, 581
HphI GGTGA 4 cut(s) 59, 119, 395, 570
Hpy166II GTNNAC 2 cut(s) 507, 578
Hpy188I TCNGA 4 cut(s) 211, 382, 391, 615
Hpy188III TCNNGA 1 cut(s) 424
Hpy8I GTNNAC 2 cut(s) 507, 578
HpyAV CCTTC 3 cut(s) 410, 428, 519
HpyCH4III ACNGT 5 cut(s) 166, 176, 281, 407, 641
HpyCH4IV ACGT 1 cut(s) 750
HpyCH4V TGCA 5 cut(s) 222, 476, 486, 557, 743
HpyF10VI GCNNNNNNNGC 3 cut(s) 444, 563, 626
HpyF3I CTNAG 3 cut(s) 515, 614, 724
HpySE526I ACGT 1 cut(s) 750
Hsp92II CATG 2 cut(s) 66, 265
KpnI GGTACC 1 cut(s) 363
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 5 cut(s) 21, 49, 298, 382, 712
LmnI GCTCC 1 cut(s) 528
Lsp1109I GCAGC 4 cut(s) 149, 450, 526, 569
MabI ACCWGGT 1 cut(s) 43
MaeI CTAG 3 cut(s) 225, 275, 510
MaeII ACGT 1 cut(s) 750
MalI GATC 5 cut(s) 23, 51, 300, 384, 714
MbiI CCGCTC 1 cut(s) 531
MboI GATC 5 cut(s) 21, 49, 298, 382, 712
MboII GAAGA 3 cut(s) 258, 404, 479
MluCI AATT 4 cut(s) 150, 460, 477, 633
MlyI GAGTC 1 cut(s) 740
MnlI CCTC 8 cut(s) 60, 89, 317, 347, 350, 385, 553, 696
MspA1I CMGCKG 2 cut(s) 140, 737
MspI CCGG 2 cut(s) 291, 581
MspR9I CCNGG 1 cut(s) 45
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 3 cut(s) 444, 563, 626
NdeII GATC 5 cut(s) 21, 49, 298, 382, 712
NlaIII CATG 2 cut(s) 66, 265
NlaIV GGNNCC 2 cut(s) 32, 361
PfeI GAWTC 2 cut(s) 214, 669
PflFI GACNNNGTC 1 cut(s) 752
PflMI CCANNNNNTGG 1 cut(s) 652
PkrI GCNGC 4 cut(s) 139, 440, 541, 559
PleI GAGTC 1 cut(s) 739
PpsI GAGTC 1 cut(s) 739
Psp6I CCWGG 1 cut(s) 43
PspFI CCCAGC 1 cut(s) 140
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 2 cut(s) 32, 361
PspPI GGNCC 1 cut(s) 31
PstI CTGCAG 1 cut(s) 559
PstNI CAGNNNCTG 2 cut(s) 164, 444
PsyI GACNNNGTC 1 cut(s) 752
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 3 cut(s) 305, 361, 367
RsaNI GTAC 3 cut(s) 304, 360, 366
SatI GCNGC 4 cut(s) 138, 439, 540, 558
Sau3AI GATC 5 cut(s) 21, 49, 298, 382, 712
Sau96I GGNCC 1 cut(s) 31
SchI GAGTC 1 cut(s) 740
ScrFI CCNGG 1 cut(s) 45
SexAI ACCWGGT 1 cut(s) 43
SfcI CTRYAG 1 cut(s) 555
SinI GGWCC 1 cut(s) 31
SpeI ACTAGT 1 cut(s) 224
Sse9I AATT 4 cut(s) 150, 460, 477, 633
SsiI CCGC 4 cut(s) 145, 531, 673, 737
SspMI CTAG 3 cut(s) 225, 275, 510
StyD4I CCNGG 1 cut(s) 43
TaaI ACNGT 5 cut(s) 166, 176, 281, 407, 641
TaiI ACGT 1 cut(s) 753
TaqI TCGA 2 cut(s) 24, 586
TasI AATT 4 cut(s) 150, 460, 477, 633
TfiI GAWTC 2 cut(s) 214, 669
TscAI CASTG 1 cut(s) 702
TseI GCWGC 4 cut(s) 137, 438, 539, 557
TspDTI ATGAA 4 cut(s) 51, 169, 195, 249
TspRI CASTG 1 cut(s) 702
Tth111I GACNNNGTC 1 cut(s) 752
Van91I CCANNNNNTGG 1 cut(s) 652
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 1 cut(s) 633
XcmI CCANNNNNNNNNTGG 2 cut(s) 41, 431
XspI CTAG 3 cut(s) 225, 275, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.