RLG00000022991

NC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0003430
Physical Location & Seq
Reverse (-)
16319980 .. 16324423
4444 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022991

Sequence Viewer

Length: 759 bp
ATGGGTGTGCTGTCAAACAAGATCCACAGGGATAAACTCAAACCTGGTGATCATATCTATACATGGAGAAACGCTTACCTCTATGCCCATCACGGTATATATGTCTGTGAGGGAATGGTTATCCACTTCACTCGGGCAGCTGAGCGGGAAACTGGCACGGGAACTGTGTTAGACCGTTTCATTTTCAGCTCATCTCCATCCCATTCTTCGGAGAACCCCTGCACGACATGCGGTTATCCATCAGGGCGTGATGGTGGTGTCATGTCTTCTTGCCTTGATTGTTTTCTGTCTGGTGGTGATCTGTACTGCTTTGAATATGGTGTCAGTCCAGCCTTCTTTATTGCCAAAGCCAGAGGAGGTACCTGTACCCTTGCCTCATCTGATCCATCTGAAGATGTCCTTCACCGTGCATTTTACCTTCTCGAGTATGGTTTTGGCAGCTACAGCCTTTTCAAAAACAATTGTGAAGACTTTGCAATTTATTGCAAAACAGGTTTGCTTGTGAATAGTAACATTGGTTTGGGAAGGAGTGGGCAGGCATCCTCCGTTTTCTCTTTTGCAAGTGTTGCAAGTGCTGCAAGTGCTATTGGTTGTTCGTCAGCTCGATATTTGCCTACTATGAGTGGTCTGAGTGCTGTCGGTGCTTTCAGTGGTCTGGGTGCTGCTTTCGGTGCTGTAACTTATTCTCTCCATCGATTGGCTTATGATATTGGATTCCGCCGTGATGTTTCAAAAGTGCCAGTAGAGAAACTCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

253

Amino Acids

26.97

Weight (kDa)

7.56

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 12 - 167 5.8e-27 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 359
AccB1I GGYRCC 1 cut(s) 359
AccB7I CCANNNNNTGG 1 cut(s) 697
AccBSI CCGCTC 1 cut(s) 145
AciI CCGC 3 cut(s) 145, 231, 718
AclWI GGATC 2 cut(s) 16, 377
AcuI CTGAAG 1 cut(s) 411
AfaI GTAC 3 cut(s) 305, 361, 367
AfiI CCNNNNNNNGG 2 cut(s) 208, 697
AgsI TTSAA 3 cut(s) 314, 454, 732
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 4 cut(s) 140, 189, 441, 602
AluI AGCT 4 cut(s) 140, 189, 441, 602
AlwI GGATC 2 cut(s) 16, 377
Ama87I CYCGRG 2 cut(s) 132, 422
ApeKI GCWGC 4 cut(s) 137, 438, 575, 662
Asp718I GGTACC 1 cut(s) 359
AsuHPI GGTGA 3 cut(s) 59, 308, 395
AvaI CYCGRG 2 cut(s) 132, 422
BanI GGYRCC 1 cut(s) 359
BbsI GAAGAC 2 cut(s) 258, 474
BbvI GCAGC 4 cut(s) 149, 450, 562, 649
BccI CCATC 6 cut(s) 96, 205, 245, 247, 394, 699
BceAI ACGGC 1 cut(s) 705
BciT130I CCWGG 1 cut(s) 45
BclI TGATCA 1 cut(s) 49
BfmI CTRYAG 1 cut(s) 442
BisI GCNGC 4 cut(s) 138, 439, 576, 663
BlpI GCTNAGC 1 cut(s) 141
BlsI GCNGC 4 cut(s) 139, 440, 577, 664
Bme1390I CCNGG 1 cut(s) 45
BmeT110I CYCGRG 2 cut(s) 132, 422
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 1 cut(s) 548
BpiI GAAGAC 2 cut(s) 258, 474
Bpu1102I GCTNAGC 1 cut(s) 141
Bsa29I ATCGAT 1 cut(s) 694
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 697
Bse1I ACTGG 2 cut(s) 157, 740
BseBI CCWGG 1 cut(s) 45
BseCI ATCGAT 1 cut(s) 694
BseGI GGATG 2 cut(s) 197, 539
BseLI CCNNNNNNNGG 2 cut(s) 208, 697
BseMII CTCAG 2 cut(s) 132, 620
BseNI ACTGG 2 cut(s) 157, 740
BseRI GAGGAG 1 cut(s) 369
BseXI GCAGC 4 cut(s) 149, 450, 562, 649
BsgI GTGCAG 1 cut(s) 205
BshNI GGYRCC 1 cut(s) 359
BshVI ATCGAT 1 cut(s) 694
BsiHKCI CYCGRG 2 cut(s) 132, 422
BslI CCNNNNNNNGG 2 cut(s) 208, 697
BsoBI CYCGRG 2 cut(s) 132, 422
Bsp143I GATC 4 cut(s) 21, 49, 298, 382
Bsp1720I GCTNAGC 1 cut(s) 141
BspACI CCGC 3 cut(s) 145, 231, 718
BspCNI CTCAG 2 cut(s) 133, 621
BspDI ATCGAT 1 cut(s) 694
BspLI GGNNCC 1 cut(s) 361
BspPI GGATC 2 cut(s) 16, 377
BspT107I GGYRCC 1 cut(s) 359
BsrBI CCGCTC 1 cut(s) 145
BsrI ACTGG 2 cut(s) 157, 740
BssMI GATC 4 cut(s) 21, 49, 298, 382
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 4 cut(s) 95, 166, 176, 407
BstAPI GCANNNNNTGC 3 cut(s) 228, 566, 575
BstC8I GCNNGC 1 cut(s) 537
BstDEI CTNAG 2 cut(s) 141, 629
BstF5I GGATG 2 cut(s) 197, 539
BstKTI GATC 4 cut(s) 24, 52, 301, 385
BstMBI GATC 4 cut(s) 21, 49, 298, 382
BstMWI GCNNNNNNNGC 7 cut(s) 228, 444, 566, 575, 581, 641, 671
BstNI CCWGG 1 cut(s) 45
BstNSI RCATGY 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 43
BstSFI CTRYAG 1 cut(s) 442
BstV1I GCAGC 4 cut(s) 149, 450, 562, 649
BstV2I GAAGAC 2 cut(s) 258, 474
BstX2I RGATCY 1 cut(s) 21
BstYI RGATCY 1 cut(s) 21
Bsu15I ATCGAT 1 cut(s) 694
BsuTUI ATCGAT 1 cut(s) 694
BtsCI GGATG 2 cut(s) 197, 539
BtsIMutI CAGTG 1 cut(s) 655
Cac8I GCNNGC 1 cut(s) 537
ClaI ATCGAT 1 cut(s) 694
CsiI ACCWGGT 1 cut(s) 43
Csp6I GTAC 3 cut(s) 304, 360, 366
CviAII CATG 3 cut(s) 63, 228, 262
CviJI RGCY 8 cut(s) 140, 189, 332, 350, 441, 447, 602, 701
CviKI_1 RGCY 8 cut(s) 140, 189, 332, 350, 441, 447, 602, 701
CviQI GTAC 3 cut(s) 304, 360, 366
DdeI CTNAG 2 cut(s) 141, 629
DpnI GATC 4 cut(s) 23, 51, 300, 384
DpnII GATC 4 cut(s) 21, 49, 298, 382
EciI GGCGGA 1 cut(s) 707
Eco57I CTGAAG 1 cut(s) 411
Eco88I CYCGRG 2 cut(s) 132, 422
EcoRII CCWGG 1 cut(s) 43
FaeI CATG 3 cut(s) 66, 231, 265
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FatI CATG 3 cut(s) 62, 227, 261
FauI CCCGC 1 cut(s) 138
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 4 cut(s) 138, 439, 576, 663
FokI GGATG 2 cut(s) 184, 526
Fsp4HI GCNGC 4 cut(s) 138, 439, 576, 663
GluI GCNGC 4 cut(s) 138, 439, 576, 663
Hin1II CATG 3 cut(s) 66, 231, 265
HinfI GANTC 1 cut(s) 714
HphI GGTGA 3 cut(s) 59, 308, 395
Hpy188I TCNGA 4 cut(s) 211, 382, 391, 630
Hpy188III TCNNGA 1 cut(s) 422
HpyAV CCTTC 4 cut(s) 343, 410, 428, 519
HpyCH4III ACNGT 4 cut(s) 95, 166, 176, 407
HpyCH4V TGCA 7 cut(s) 222, 410, 476, 486, 560, 569, 578
HpyF10VI GCNNNNNNNGC 7 cut(s) 228, 444, 566, 575, 581, 641, 671
HpyF3I CTNAG 2 cut(s) 141, 629
Hsp92II CATG 3 cut(s) 66, 231, 265
KpnI GGTACC 1 cut(s) 363
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 4 cut(s) 21, 49, 298, 382
Lsp1109I GCAGC 4 cut(s) 149, 450, 562, 649
LweI GCATC 1 cut(s) 548
MabI ACCWGGT 1 cut(s) 43
MaeIII GTNAC 2 cut(s) 509, 676
MalI GATC 4 cut(s) 23, 51, 300, 384
MbiI CCGCTC 1 cut(s) 145
MboI GATC 4 cut(s) 21, 49, 298, 382
MboII GAAGA 4 cut(s) 198, 258, 404, 479
MfeI CAATTG 1 cut(s) 460
MflI RGATCY 1 cut(s) 21
MluCI AATT 2 cut(s) 460, 477
MnlI CCTC 6 cut(s) 89, 103, 347, 350, 385, 553
MspA1I CMGCKG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 45
MunI CAATTG 1 cut(s) 460
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 7 cut(s) 228, 444, 566, 575, 581, 641, 671
NdeII GATC 4 cut(s) 21, 49, 298, 382
NlaIII CATG 3 cut(s) 66, 231, 265
NlaIV GGNNCC 1 cut(s) 361
NspI RCATGY 1 cut(s) 231
PaeR7I CTCGAG 1 cut(s) 422
PfeI GAWTC 1 cut(s) 714
PflMI CCANNNNNTGG 1 cut(s) 697
PkrI GCNGC 4 cut(s) 139, 440, 577, 664
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 361
PsuI RGATCY 1 cut(s) 21
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 3 cut(s) 305, 361, 367
RsaNI GTAC 3 cut(s) 304, 360, 366
SatI GCNGC 4 cut(s) 138, 439, 576, 663
Sau3AI GATC 4 cut(s) 21, 49, 298, 382
ScrFI CCNGG 1 cut(s) 45
SexAI ACCWGGT 1 cut(s) 43
SfaNI GCATC 1 cut(s) 548
SfcI CTRYAG 1 cut(s) 442
Sfr274I CTCGAG 1 cut(s) 422
SlaI CTCGAG 1 cut(s) 422
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 2 cut(s) 460, 477
SsiI CCGC 3 cut(s) 145, 231, 718
StyD4I CCNGG 1 cut(s) 43
TaaI ACNGT 4 cut(s) 95, 166, 176, 407
TaqI TCGA 3 cut(s) 423, 604, 694
TasI AATT 2 cut(s) 460, 477
TatI WGTACW 1 cut(s) 303
TfiI GAWTC 1 cut(s) 714
TscAI CASTG 1 cut(s) 655
TseI GCWGC 4 cut(s) 137, 438, 575, 662
TspDTI ATGAA 1 cut(s) 169
TspGWI ACGGA 1 cut(s) 535
TspRI CASTG 1 cut(s) 655
Van91I CCANNNNNTGG 1 cut(s) 697
XceI RCATGY 1 cut(s) 231
XhoI CTCGAG 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.