Rw3G025070

NC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0003430
Physical Location & Seq
Forward (+)
32883747 .. 32887189
3443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G025070.1

Sequence Viewer

Length: 717 bp
ATGGGTGTGCTGTCAAACAAGATCGACAGGGATCAACTCAAACCTGGTGATCATATCTATACATGGAGAAACGCCTACCTCTATGCCCATCACGGGATATATGTCGGTGAGGGAAAGGTTATCCACTTCACTCGGGCAGCTGGGCGGGAAATTGGCACAGGAACTGTGTTAGACCGTTTCATTTTCAGCTCATCTCCATCCCATTCTTCAGAGAATCCCTGCACGAATTGCGATGATCCATCAGGGCGTGATGGCGGTGTCATGTCTTCTTGCCTAGATTGTTTTCTGTCTGGTGGTGATCTGTACCGCTTTGAATATGGAGGTACCTGTACCCTTGCCTCGTCTGACCCATCTGAAGATGTCCTTCACCGTGCCTTTTTCCTTCTCCAGAATGGTTTTGGGAGCTACTGCCTTTTCAAAAACAATTGTGAAGACTTTGCAATTTATTGCAAAACAGGTTTGCTTGTGAAAAGTAGCACTAGTTTGGGAAGGAGTGGGCAGGCATCCTCCGGTTTCTCTTTTGCAGGTGTTGCAAGTGGTATTGGTGTTGCAGCAGGTTCGTCAGCTCGATATTTGCCGATTGTGGGTTTCGGTGCTTTCAGTGGTCTGGGTGCTGCTTTCGGTGTTGGAATTTATTCTTACCAGCGATTAACTTATGATATTGGATTCCGCAGTGATGTTTCAAAAGTGCCAGTGGAGGAACTCTGGACTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

238

Amino Acids

25.52

Weight (kDa)

6.05

Isoelectric Point (pI)

35.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 12 - 155 3.3e-28 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 515
Acc36I ACCTGC 2 cut(s) 515, 545
Acc65I GGTACC 1 cut(s) 323
AccB1I GGYRCC 1 cut(s) 323
AciI CCGC 4 cut(s) 145, 255, 307, 670
AclWI GGATC 2 cut(s) 39, 230
AcsI RAATTY 1 cut(s) 630
AcuI CTGAAG 2 cut(s) 192, 375
AfaI GTAC 3 cut(s) 305, 325, 331
AfiI CCNNNNNNNGG 2 cut(s) 93, 584
AgsI TTSAA 3 cut(s) 314, 418, 684
AhlI ACTAGT 1 cut(s) 479
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 4 cut(s) 140, 189, 405, 566
AluI AGCT 4 cut(s) 140, 189, 405, 566
AlwI GGATC 2 cut(s) 39, 230
AlwNI CAGNNNCTG 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 132
ApeKI GCWGC 3 cut(s) 137, 551, 614
ApoI RAATTY 1 cut(s) 630
Asp700I GAANNNNTTC 1 cut(s) 634
Asp718I GGTACC 1 cut(s) 323
AsuHPI GGTGA 4 cut(s) 59, 119, 308, 359
AvaI CYCGRG 1 cut(s) 132
BanI GGYRCC 1 cut(s) 323
BbsI GAAGAC 2 cut(s) 258, 438
BbvI GCAGC 3 cut(s) 149, 563, 601
BccI CCATC 5 cut(s) 96, 205, 245, 247, 358
BcgI CGANNNNNNTGC 2 cut(s) 540, 574
BciT130I CCWGG 1 cut(s) 45
BclI TGATCA 1 cut(s) 49
BcuI ACTAGT 1 cut(s) 479
BfaI CTAG 2 cut(s) 275, 480
BfuAI ACCTGC 2 cut(s) 515, 545
BisI GCNGC 3 cut(s) 138, 552, 615
BlsI GCNGC 3 cut(s) 139, 553, 616
Bme1390I CCNGG 1 cut(s) 45
BmeT110I CYCGRG 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 325
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 1 cut(s) 512
BpiI GAAGAC 2 cut(s) 258, 438
BpmI CTGGAG 1 cut(s) 371
BsaWI WCCGGW 1 cut(s) 509
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 584
Bse1I ACTGG 1 cut(s) 692
BseBI CCWGG 1 cut(s) 45
BseGI GGATG 2 cut(s) 197, 503
BseLI CCNNNNNNNGG 2 cut(s) 93, 584
BseNI ACTGG 1 cut(s) 692
BseXI GCAGC 3 cut(s) 149, 563, 601
BseYI CCCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 205
BshNI GGYRCC 1 cut(s) 323
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 1 cut(s) 510
BslI CCNNNNNNNGG 2 cut(s) 93, 584
BsoBI CYCGRG 1 cut(s) 132
Bsp143I GATC 5 cut(s) 21, 31, 49, 235, 298
BspACI CCGC 4 cut(s) 145, 255, 307, 670
BspLI GGNNCC 1 cut(s) 325
BspMI ACCTGC 2 cut(s) 515, 545
BspPI GGATC 2 cut(s) 39, 230
BspT107I GGYRCC 1 cut(s) 323
BsrI ACTGG 1 cut(s) 692
BssMI GATC 5 cut(s) 21, 31, 49, 235, 298
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 3 cut(s) 166, 176, 371
BstAPI GCANNNNNTGC 2 cut(s) 228, 530
BstC8I GCNNGC 1 cut(s) 501
BstF5I GGATG 2 cut(s) 197, 503
BstKTI GATC 5 cut(s) 24, 34, 52, 238, 301
BstMBI GATC 5 cut(s) 21, 31, 49, 235, 298
BstMWI GCNNNNNNNGC 2 cut(s) 228, 530
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 43
BstV1I GCAGC 3 cut(s) 149, 563, 601
BstV2I GAAGAC 2 cut(s) 258, 438
BtgZI GCGATG 1 cut(s) 246
BtsCI GGATG 2 cut(s) 197, 503
BtsI GCAGTG 1 cut(s) 679
BtsIMutI CAGTG 3 cut(s) 607, 679, 699
BveI ACCTGC 2 cut(s) 515, 545
Cac8I GCNNGC 1 cut(s) 501
CaiI CAGNNNCTG 1 cut(s) 164
CsiI ACCWGGT 1 cut(s) 43
Csp6I GTAC 3 cut(s) 304, 324, 330
CviAII CATG 2 cut(s) 63, 262
CviJI RGCY 4 cut(s) 140, 189, 405, 566
CviKI_1 RGCY 4 cut(s) 140, 189, 405, 566
CviQI GTAC 3 cut(s) 304, 324, 330
DpnI GATC 5 cut(s) 23, 33, 51, 237, 300
DpnII GATC 5 cut(s) 21, 31, 49, 235, 298
Eco57I CTGAAG 2 cut(s) 192, 375
Eco88I CYCGRG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 43
FaeI CATG 2 cut(s) 66, 265
FalI AAGNNNNNCTT 2 cut(s) 348, 380
FatI CATG 2 cut(s) 62, 261
FauI CCCGC 1 cut(s) 138
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 3 cut(s) 138, 552, 615
FokI GGATG 2 cut(s) 184, 490
Fsp4HI GCNGC 3 cut(s) 138, 552, 615
FspBI CTAG 2 cut(s) 275, 480
GluI GCNGC 3 cut(s) 138, 552, 615
GsaI CCCAGC 1 cut(s) 144
GsuI CTGGAG 1 cut(s) 371
HapII CCGG 1 cut(s) 510
Hin1II CATG 2 cut(s) 66, 265
HinfI GANTC 2 cut(s) 214, 666
HpaII CCGG 1 cut(s) 510
HphI GGTGA 4 cut(s) 59, 119, 308, 359
Hpy188I TCNGA 3 cut(s) 211, 346, 355
Hpy188III TCNNGA 2 cut(s) 388, 706
HpyAV CCTTC 3 cut(s) 374, 392, 483
HpyCH4III ACNGT 3 cut(s) 166, 176, 371
HpyCH4V TGCA 6 cut(s) 222, 440, 450, 524, 533, 551
HpyF10VI GCNNNNNNNGC 2 cut(s) 228, 530
Hsp92II CATG 2 cut(s) 66, 265
KpnI GGTACC 1 cut(s) 327
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 5 cut(s) 21, 31, 49, 235, 298
LmnI GCTCC 1 cut(s) 402
Lsp1109I GCAGC 3 cut(s) 149, 563, 601
LweI GCATC 1 cut(s) 512
MabI ACCWGGT 1 cut(s) 43
MaeI CTAG 2 cut(s) 275, 480
MalI GATC 5 cut(s) 23, 33, 51, 237, 300
MboI GATC 5 cut(s) 21, 31, 49, 235, 298
MboII GAAGA 4 cut(s) 198, 258, 368, 443
MfeI CAATTG 1 cut(s) 424
MluCI AATT 5 cut(s) 150, 226, 424, 441, 630
MmeI TCCRAC 1 cut(s) 607
MnlI CCTC 6 cut(s) 89, 103, 314, 349, 517, 691
MroXI GAANNNNTTC 1 cut(s) 634
MseI TTAA 1 cut(s) 650
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 1 cut(s) 510
MspR9I CCNGG 1 cut(s) 45
MunI CAATTG 1 cut(s) 424
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 2 cut(s) 228, 530
NdeII GATC 5 cut(s) 21, 31, 49, 235, 298
NlaIII CATG 2 cut(s) 66, 265
NlaIV GGNNCC 1 cut(s) 325
PaqCI CACCTGC 1 cut(s) 515
PdmI GAANNNNTTC 1 cut(s) 634
PfeI GAWTC 2 cut(s) 214, 666
PkrI GCNGC 3 cut(s) 139, 553, 616
Psp6I CCWGG 1 cut(s) 43
PspFI CCCAGC 1 cut(s) 140
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 325
PstNI CAGNNNCTG 1 cut(s) 164
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 3 cut(s) 305, 325, 331
RsaNI GTAC 3 cut(s) 304, 324, 330
SaqAI TTAA 1 cut(s) 650
SatI GCNGC 3 cut(s) 138, 552, 615
Sau3AI GATC 5 cut(s) 21, 31, 49, 235, 298
ScrFI CCNGG 1 cut(s) 45
SexAI ACCWGGT 1 cut(s) 43
SfaNI GCATC 1 cut(s) 512
SpeI ACTAGT 1 cut(s) 479
Sse9I AATT 5 cut(s) 150, 226, 424, 441, 630
SsiI CCGC 4 cut(s) 145, 255, 307, 670
SspMI CTAG 2 cut(s) 275, 480
StyD4I CCNGG 1 cut(s) 43
TaaI ACNGT 3 cut(s) 166, 176, 371
TaqI TCGA 2 cut(s) 24, 568
TasI AATT 5 cut(s) 150, 226, 424, 441, 630
TfiI GAWTC 2 cut(s) 214, 666
Tru1I TTAA 1 cut(s) 650
Tru9I TTAA 1 cut(s) 650
TscAI CASTG 3 cut(s) 607, 679, 699
TseI GCWGC 3 cut(s) 137, 551, 614
TspDTI ATGAA 1 cut(s) 169
TspRI CASTG 3 cut(s) 607, 679, 699
XapI RAATTY 1 cut(s) 630
XcmI CCANNNNNNNNNTGG 1 cut(s) 395
XmnI GAANNNNTTC 1 cut(s) 634
XspI CTAG 2 cut(s) 275, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.