Rroxscaffold_6G00394630

NC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003430
Physical Location & Seq
Reverse (-)
15389384 .. 15394021
4638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00394630.1

Sequence Viewer

Length: 1116 bp
ATGGGTGTGCTGTCAAACAAGATCCACAGGGATCAACTCAAACTTGGTGATCATATCTATACATGGAGATACGCTTACCTCTATGCCCATCATGGTATATATATCTGTGAGGGAATGGTTATCCACTTCACTCGGGCAGCTGGGCCGGAAATTGGCACAGGAACTGTGTTAGACCGTTTCATTTCCAGCTCATCTCCATCCCATTCTTCGGATAATCGCTGCACGACTTGCGGTTATCCATCAGGGCGTGATGATGGTGTCATGTCTTCTTGCCTAGATTGTTTTCTGTCTGGTGGTGATCTGTACCTCTTTGAATATGGTGTCAGTCCAGCCTTCTTTATTGCCAAAGCCAGAGGAGGTACCTGTACCCTTGCCTTGTCTGATCCATCTGAAGATGTCCTTCACCGTGCATTTTACCTTCTCCAGAATGGTTTTGGCAGCTACAGCCTTTCCAAAAACAATTGTGAAGACTTTGCAATTTATTGCAAAACTGGTTTGCTTGTGAATAGTAGCAATGGTTTGGGAAGGAGTGGGCAGGCATCCTCCATTTTATCTGTTGCAAATGCAAGTGCAAGTCAGGCATCCTCCATTTTATCTGTTGCAAATGCAAGTGCAAGTGGGCAGGCATCCTCCATTTTATCTGTTGCAAATGCAAGTGCAAGGCAGGTATCCTCCATTTTATCTGTTGCAAATGCAAGTGCAAGTGGGCAGGCATCCTCCATTTTATCTGTTGCAAATGCAAGTGCAAGGCAGGTATCCTCCATTTTATCTGTTGCAAATGCAAGTGCAAGTGGGCAGGCATCCTCCATTTTATCTGTTGCAAATGCAAGTGCAAGGCAGGTATCCTCCATTTTATCTGTTGCAAATGCAAGTGCAAGTGGGCAGGCATCCTCCATTTTATCTGTTGCAAATGCAAGTGCAAGTGCTATTGGTTATTCACCGGCTCAATATTTGCTTACTATGAGTGGTCTGAGTGCTTTCGGTGCTTTCAGTGGTCTGGGTGTTTTCGGTGCTGGAATTTATTCTCTCCATCGATTGGCTTATGACGTTGGAGTCCGCCGTGATGTTTCAAAAGTGCCAGTAGAGAAACTCGATCGGTTGATCGGGTTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

371

Amino Acids

38.13

Weight (kDa)

8.38

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 12 - 167 1.5e-25 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1052
Acc36I ACCTGC 3 cut(s) 655, 742, 829
Acc65I GGTACC 1 cut(s) 359
AccB1I GGYRCC 1 cut(s) 359
AccB7I CCANNNNNTGG 1 cut(s) 1036
AciI CCGC 2 cut(s) 231, 1057
AclWI GGATC 3 cut(s) 16, 39, 377
AcsI RAATTY 1 cut(s) 1017
AcuI CTGAAG 1 cut(s) 411
AfaI GTAC 3 cut(s) 305, 361, 367
AfiI CCNNNNNNNGG 3 cut(s) 152, 208, 1036
AgsI TTSAA 2 cut(s) 314, 1071
AluBI AGCT 3 cut(s) 140, 189, 441
AluI AGCT 3 cut(s) 140, 189, 441
AlwI GGATC 3 cut(s) 16, 39, 377
AlwNI CAGNNNCTG 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 132
AoxI GGCC 1 cut(s) 143
ApeKI GCWGC 3 cut(s) 137, 219, 438
ApoI RAATTY 1 cut(s) 1017
Asp700I GAANNNNTTC 1 cut(s) 1021
Asp718I GGTACC 1 cut(s) 359
AspS9I GGNCC 1 cut(s) 143
AsuHPI GGTGA 4 cut(s) 59, 308, 395, 930
AvaI CYCGRG 1 cut(s) 132
BanI GGYRCC 1 cut(s) 359
BbsI GAAGAC 2 cut(s) 258, 474
BbvI GCAGC 3 cut(s) 149, 206, 450
BccI CCATC 6 cut(s) 96, 205, 247, 248, 394, 1038
BceAI ACGGC 1 cut(s) 1044
BciVI GTATCC 3 cut(s) 679, 766, 853
BclI TGATCA 1 cut(s) 49
BfaI CTAG 1 cut(s) 275
BfmI CTRYAG 1 cut(s) 442
BfuAI ACCTGC 3 cut(s) 655, 742, 829
BfuI GTATCC 3 cut(s) 679, 766, 853
BisI GCNGC 3 cut(s) 138, 220, 439
BlsI GCNGC 3 cut(s) 139, 221, 440
BmeT110I CYCGRG 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 361
BmsI GCATC 6 cut(s) 548, 590, 635, 722, 809, 896
BpiI GAAGAC 2 cut(s) 258, 474
BpmI CTGGAG 1 cut(s) 407
Bsa29I ATCGAT 1 cut(s) 1033
Bsc4I CCNNNNNNNGG 3 cut(s) 152, 208, 1036
Bse118I RCCGGY 1 cut(s) 940
Bse1I ACTGG 2 cut(s) 496, 1079
Bse3DI GCAATG 1 cut(s) 520
BseCI ATCGAT 1 cut(s) 1033
BseGI GGATG 7 cut(s) 197, 539, 581, 626, 713, 800, 887
BseLI CCNNNNNNNGG 3 cut(s) 152, 208, 1036
BseMI GCAATG 1 cut(s) 520
BseMII CTCAG 1 cut(s) 962
BseNI ACTGG 2 cut(s) 496, 1079
BseRI GAGGAG 1 cut(s) 369
BseXI GCAGC 3 cut(s) 149, 206, 450
BseYI CCCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 205
Bsh1285I CGRYCG 1 cut(s) 1096
BshFI GGCC 1 cut(s) 145
BshNI GGYRCC 1 cut(s) 359
BshVI ATCGAT 1 cut(s) 1033
BsiEI CGRYCG 1 cut(s) 1096
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 2 cut(s) 146, 941
BslI CCNNNNNNNGG 3 cut(s) 152, 208, 1036
BsnI GGCC 1 cut(s) 145
BsoBI CYCGRG 1 cut(s) 132
Bsp143I GATC 7 cut(s) 21, 31, 49, 298, 382, 1093, 1101
BspACI CCGC 2 cut(s) 231, 1057
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 1 cut(s) 963
BspDI ATCGAT 1 cut(s) 1033
BspLI GGNNCC 1 cut(s) 361
BspMI ACCTGC 3 cut(s) 655, 742, 829
BspPI GGATC 3 cut(s) 16, 39, 377
BspT107I GGYRCC 1 cut(s) 359
BsrDI GCAATG 1 cut(s) 520
BsrFI RCCGGY 1 cut(s) 940
BsrI ACTGG 2 cut(s) 496, 1079
BssAI RCCGGY 1 cut(s) 940
BssMI GATC 7 cut(s) 21, 31, 49, 298, 382, 1093, 1101
Bst4CI ACNGT 3 cut(s) 166, 176, 407
BstAPI GCANNNNNTGC 1 cut(s) 228
BstC8I GCNNGC 5 cut(s) 537, 624, 711, 798, 885
BstDEI CTNAG 2 cut(s) 971, 1113
BstF5I GGATG 7 cut(s) 197, 539, 581, 626, 713, 800, 887
BstKTI GATC 7 cut(s) 24, 34, 52, 301, 385, 1096, 1104
BstMBI GATC 7 cut(s) 21, 31, 49, 298, 382, 1093, 1101
BstMCI CGRYCG 1 cut(s) 1096
BstMWI GCNNNNNNNGC 4 cut(s) 228, 444, 578, 983
BstSFI CTRYAG 1 cut(s) 442
BstV1I GCAGC 3 cut(s) 149, 206, 450
BstV2I GAAGAC 2 cut(s) 258, 474
BstX2I RGATCY 1 cut(s) 21
BstYI RGATCY 1 cut(s) 21
Bsu15I ATCGAT 1 cut(s) 1033
BsuI GTATCC 3 cut(s) 679, 766, 853
BsuRI GGCC 1 cut(s) 145
BsuTUI ATCGAT 1 cut(s) 1033
BtsCI GGATG 7 cut(s) 197, 539, 581, 626, 713, 800, 887
BtsIMutI CAGTG 1 cut(s) 997
BveI ACCTGC 3 cut(s) 655, 742, 829
Cac8I GCNNGC 5 cut(s) 537, 624, 711, 798, 885
CaiI CAGNNNCTG 1 cut(s) 164
Cfr10I RCCGGY 1 cut(s) 940
Cfr13I GGNCC 1 cut(s) 143
ClaI ATCGAT 1 cut(s) 1033
Csp6I GTAC 3 cut(s) 304, 360, 366
CviAII CATG 3 cut(s) 63, 92, 262
CviQI GTAC 3 cut(s) 304, 360, 366
DdeI CTNAG 2 cut(s) 971, 1113
DpnI GATC 7 cut(s) 23, 33, 51, 300, 384, 1095, 1103
DpnII GATC 7 cut(s) 21, 31, 49, 298, 382, 1093, 1101
DrdI GACNNNNNNGTC 1 cut(s) 1052
DseDI GACNNNNNNGTC 1 cut(s) 1052
EciI GGCGGA 1 cut(s) 1046
Eco57I CTGAAG 1 cut(s) 411
Eco88I CYCGRG 1 cut(s) 132
FaeI CATG 3 cut(s) 66, 95, 265
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FatI CATG 3 cut(s) 62, 91, 261
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 3 cut(s) 138, 220, 439
FokI GGATG 7 cut(s) 184, 526, 568, 613, 700, 787, 874
Fsp4HI GCNGC 3 cut(s) 138, 220, 439
FspBI CTAG 1 cut(s) 275
GluI GCNGC 3 cut(s) 138, 220, 439
GsaI CCCAGC 1 cut(s) 144
GsuI CTGGAG 1 cut(s) 407
HaeIII GGCC 1 cut(s) 145
HapII CCGG 2 cut(s) 146, 941
Hin1II CATG 3 cut(s) 66, 95, 265
HinfI GANTC 1 cut(s) 1053
HpaII CCGG 2 cut(s) 146, 941
HphI GGTGA 4 cut(s) 59, 308, 395, 930
Hpy188I TCNGA 4 cut(s) 211, 382, 391, 972
Hpy188III TCNNGA 1 cut(s) 424
HpyAV CCTTC 4 cut(s) 343, 410, 428, 519
HpyCH4III ACNGT 3 cut(s) 166, 176, 407
HpyCH4IV ACGT 1 cut(s) 1047
HpyF10VI GCNNNNNNNGC 4 cut(s) 228, 444, 578, 983
HpyF3I CTNAG 2 cut(s) 971, 1113
HpySE526I ACGT 1 cut(s) 1047
Hsp92II CATG 3 cut(s) 66, 95, 265
KpnI GGTACC 1 cut(s) 363
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 7 cut(s) 21, 31, 49, 298, 382, 1093, 1101
Lsp1109I GCAGC 3 cut(s) 149, 206, 450
LweI GCATC 6 cut(s) 548, 590, 635, 722, 809, 896
MaeI CTAG 1 cut(s) 275
MaeII ACGT 1 cut(s) 1047
MalI GATC 7 cut(s) 23, 33, 51, 300, 384, 1095, 1103
MboI GATC 7 cut(s) 21, 31, 49, 298, 382, 1093, 1101
MboII GAAGA 4 cut(s) 198, 258, 404, 479
MfeI CAATTG 1 cut(s) 460
MflI RGATCY 1 cut(s) 21
MluCI AATT 4 cut(s) 150, 460, 477, 1017
MlyI GAGTC 1 cut(s) 1062
MmeI TCCRAC 1 cut(s) 1030
MroXI GAANNNNTTC 1 cut(s) 1021
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 2 cut(s) 146, 941
MunI CAATTG 1 cut(s) 460
MwoI GCNNNNNNNGC 4 cut(s) 228, 444, 578, 983
NdeII GATC 7 cut(s) 21, 31, 49, 298, 382, 1093, 1101
NlaIII CATG 3 cut(s) 66, 95, 265
NlaIV GGNNCC 1 cut(s) 361
PdmI GAANNNNTTC 1 cut(s) 1021
PflMI CCANNNNNTGG 1 cut(s) 1036
PkrI GCNGC 3 cut(s) 139, 221, 440
Ple19I CGATCG 1 cut(s) 1096
PleI GAGTC 1 cut(s) 1061
PpsI GAGTC 1 cut(s) 1061
PspFI CCCAGC 1 cut(s) 140
PspN4I GGNNCC 1 cut(s) 361
PspPI GGNCC 1 cut(s) 143
PstNI CAGNNNCTG 1 cut(s) 164
PsuI RGATCY 1 cut(s) 21
PvuI CGATCG 1 cut(s) 1096
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 3 cut(s) 305, 361, 367
RsaNI GTAC 3 cut(s) 304, 360, 366
SatI GCNGC 3 cut(s) 138, 220, 439
Sau3AI GATC 7 cut(s) 21, 31, 49, 298, 382, 1093, 1101
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 1 cut(s) 1062
SfaNI GCATC 6 cut(s) 548, 590, 635, 722, 809, 896
SfcI CTRYAG 1 cut(s) 442
Sse9I AATT 4 cut(s) 150, 460, 477, 1017
SsiI CCGC 2 cut(s) 231, 1057
SspI AATATT 1 cut(s) 950
SspMI CTAG 1 cut(s) 275
TaaI ACNGT 3 cut(s) 166, 176, 407
TaiI ACGT 1 cut(s) 1050
TaqI TCGA 2 cut(s) 1033, 1092
TasI AATT 4 cut(s) 150, 460, 477, 1017
TscAI CASTG 1 cut(s) 997
TseI GCWGC 3 cut(s) 137, 219, 438
TspDTI ATGAA 1 cut(s) 169
TspRI CASTG 1 cut(s) 997
Van91I CCANNNNNTGG 1 cut(s) 1036
XapI RAATTY 1 cut(s) 1017
XcmI CCANNNNNNNNNTGG 1 cut(s) 431
XmnI GAANNNNTTC 1 cut(s) 1021
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.