Rh3DG315600

NC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0003430
Physical Location & Seq
Forward (+)
33915433 .. 33921986
6554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG315600.1

Sequence Viewer

Length: 651 bp
ATGAGTGTGCTGTTAAACAAGATCCACAGGAATCAACTCAAACCTGGTGATCATATCTATACATGGAGAAACGCTGGCCTCTATGCCCATCACGGGATATATGTCGGTGAGGGAAAGGCTATCCACTTCACTCGGGCAGCTGGGCGGGAAGTTGGCACAGGAAACCGTTTCATTTTCAGCTCATCTTCATCCCATTCTTCGGAGAATCCCTGCATGACTTGCGGTGGTCCATCAAGGCGTGATGGTAGTGTCATGTCTTCTTGCTTAGATTGTTTTCTGTCTGGTGGTGATCTTTACTTCTTTGAGTATGGTGTCACTATAGCCGTCTTTATTGCCAAAGCCAGAGGAGGTACCTGTACCCTTGCTTCGTCTGATCCATCTGAAGATGTCCTTCACCGTGCATTTTACCTTCTCAAGAATGGTTTTGGCAGCTACAGCCTTTTCAAAAACAATTGTGAAGACTTTGCAATTTATTGCAAAACAGGTTTGCTTGTGAATAGCAGCATTGGTTTGGGGAGTGGGCAGGCATCCTCCGTTTGCTCTTTAGCATTCATTCCTCTGGGTGCTGTCGGTTATTCTCTCCATCGGTTGGCTTTTGATATTGGAGTCCGCCGTGATGTTTCAAAAGTGCCAGTAGAGAAACTCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

216

Amino Acids

23.25

Weight (kDa)

8.78

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 12 - 164 2.2e-27 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 350
AccB1I GGYRCC 1 cut(s) 350
AccB7I CCANNNNNTGG 1 cut(s) 589
AciI CCGC 3 cut(s) 145, 222, 610
AclWI GGATC 2 cut(s) 16, 368
AcuI CTGAAG 1 cut(s) 402
AfaI GTAC 2 cut(s) 352, 358
AfiI CCNNNNNNNGG 3 cut(s) 93, 199, 589
AgsI TTSAA 2 cut(s) 445, 624
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 3 cut(s) 140, 180, 432
AluI AGCT 3 cut(s) 140, 180, 432
AlwI GGATC 2 cut(s) 16, 368
Ama87I CYCGRG 1 cut(s) 132
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 3 cut(s) 137, 429, 501
Asp718I GGTACC 1 cut(s) 350
AspS9I GGNCC 1 cut(s) 227
AsuHPI GGTGA 4 cut(s) 59, 119, 299, 386
AvaI CYCGRG 1 cut(s) 132
AvaII GGWCC 1 cut(s) 227
BanI GGYRCC 1 cut(s) 350
BarI GAAGNNNNNNTAC 2 cut(s) 349, 381
BbsI GAAGAC 2 cut(s) 249, 465
BbvI GCAGC 3 cut(s) 149, 441, 513
BccI CCATC 5 cut(s) 96, 236, 238, 385, 591
BceAI ACGGC 2 cut(s) 308, 597
BciT130I CCWGG 1 cut(s) 45
BclI TGATCA 1 cut(s) 49
BfmI CTRYAG 2 cut(s) 318, 433
BisI GCNGC 3 cut(s) 138, 430, 502
BlsI GCNGC 3 cut(s) 139, 431, 503
Bme1390I CCNGG 1 cut(s) 45
Bme18I GGWCC 1 cut(s) 227
BmeT110I CYCGRG 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 1 cut(s) 352
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 1 cut(s) 536
BpiI GAAGAC 2 cut(s) 249, 465
BpuEI CTTGAG 1 cut(s) 398
Bsc4I CCNNNNNNNGG 3 cut(s) 93, 199, 589
Bse1I ACTGG 1 cut(s) 632
BseBI CCWGG 1 cut(s) 45
BseGI GGATG 2 cut(s) 188, 527
BseLI CCNNNNNNNGG 3 cut(s) 93, 199, 589
BseNI ACTGG 1 cut(s) 632
BseRI GAGGAG 1 cut(s) 360
BseXI GCAGC 3 cut(s) 149, 441, 513
BseYI CCCAGC 1 cut(s) 140
BshFI GGCC 1 cut(s) 78
BshNI GGYRCC 1 cut(s) 350
BsiHKCI CYCGRG 1 cut(s) 132
BslI CCNNNNNNNGG 3 cut(s) 93, 199, 589
BsmI GAATGC 1 cut(s) 548
BsnI GGCC 1 cut(s) 78
BsoBI CYCGRG 1 cut(s) 132
Bsp143I GATC 4 cut(s) 21, 49, 289, 373
BspACI CCGC 3 cut(s) 145, 222, 610
BspANI GGCC 1 cut(s) 78
BspLI GGNNCC 1 cut(s) 352
BspPI GGATC 2 cut(s) 16, 368
BspT107I GGYRCC 1 cut(s) 350
BsrI ACTGG 1 cut(s) 632
BssMI GATC 4 cut(s) 21, 49, 289, 373
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 2 cut(s) 167, 398
BstAPI GCANNNNNTGC 1 cut(s) 219
BstC8I GCNNGC 2 cut(s) 76, 525
BstDEI CTNAG 1 cut(s) 265
BstF5I GGATG 2 cut(s) 188, 527
BstKTI GATC 4 cut(s) 24, 52, 292, 376
BstMBI GATC 4 cut(s) 21, 49, 289, 373
BstMWI GCNNNNNNNGC 2 cut(s) 219, 435
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 43
BstSFI CTRYAG 2 cut(s) 318, 433
BstV1I GCAGC 3 cut(s) 149, 441, 513
BstV2I GAAGAC 2 cut(s) 249, 465
BstX2I RGATCY 1 cut(s) 21
BstYI RGATCY 1 cut(s) 21
BsuRI GGCC 1 cut(s) 78
BtsCI GGATG 2 cut(s) 188, 527
Cac8I GCNNGC 2 cut(s) 76, 525
Cfr13I GGNCC 1 cut(s) 227
CsiI ACCWGGT 1 cut(s) 43
Csp6I GTAC 2 cut(s) 351, 357
CviAII CATG 3 cut(s) 63, 214, 253
CviJI RGCY 9 cut(s) 78, 119, 140, 180, 323, 341, 432, 438, 593
CviKI_1 RGCY 9 cut(s) 78, 119, 140, 180, 323, 341, 432, 438, 593
CviQI GTAC 2 cut(s) 351, 357
DdeI CTNAG 1 cut(s) 265
DpnI GATC 4 cut(s) 23, 51, 291, 375
DpnII GATC 4 cut(s) 21, 49, 289, 373
EciI GGCGGA 1 cut(s) 599
Eco47I GGWCC 1 cut(s) 227
Eco57I CTGAAG 1 cut(s) 402
Eco88I CYCGRG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 43
FaeI CATG 3 cut(s) 66, 217, 256
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FatI CATG 3 cut(s) 62, 213, 252
FauI CCCGC 1 cut(s) 138
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 3 cut(s) 138, 430, 502
FokI GGATG 2 cut(s) 175, 514
Fsp4HI GCNGC 3 cut(s) 138, 430, 502
GluI GCNGC 3 cut(s) 138, 430, 502
GsaI CCCAGC 1 cut(s) 144
HaeIII GGCC 1 cut(s) 78
Hin1II CATG 3 cut(s) 66, 217, 256
HinfI GANTC 3 cut(s) 31, 205, 606
HphI GGTGA 4 cut(s) 59, 119, 299, 386
Hpy188I TCNGA 3 cut(s) 202, 373, 382
Hpy188III TCNNGA 1 cut(s) 415
HpyAV CCTTC 2 cut(s) 401, 419
HpyCH4III ACNGT 2 cut(s) 167, 398
HpyCH4V TGCA 4 cut(s) 213, 401, 467, 477
HpyF10VI GCNNNNNNNGC 2 cut(s) 219, 435
HpyF3I CTNAG 1 cut(s) 265
Hsp92II CATG 3 cut(s) 66, 217, 256
KpnI GGTACC 1 cut(s) 354
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 4 cut(s) 21, 49, 289, 373
Lsp1109I GCAGC 3 cut(s) 149, 441, 513
LweI GCATC 1 cut(s) 536
MabI ACCWGGT 1 cut(s) 43
MaeIII GTNAC 1 cut(s) 313
MalI GATC 4 cut(s) 23, 51, 291, 375
MboI GATC 4 cut(s) 21, 49, 289, 373
MboII GAAGA 5 cut(s) 177, 189, 249, 395, 470
MfeI CAATTG 1 cut(s) 451
MflI RGATCY 1 cut(s) 21
MluCI AATT 2 cut(s) 451, 468
MlyI GAGTC 1 cut(s) 615
MnlI CCTC 6 cut(s) 89, 103, 338, 341, 541, 567
MseI TTAA 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 45
MunI CAATTG 1 cut(s) 451
Mva1269I GAATGC 1 cut(s) 548
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 2 cut(s) 219, 435
NdeII GATC 4 cut(s) 21, 49, 289, 373
NlaIII CATG 3 cut(s) 66, 217, 256
NlaIV GGNNCC 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 313
PctI GAATGC 1 cut(s) 548
PfeI GAWTC 2 cut(s) 31, 205
PflMI CCANNNNNTGG 1 cut(s) 589
PkrI GCNGC 3 cut(s) 139, 431, 503
PleI GAGTC 1 cut(s) 614
PpsI GAGTC 1 cut(s) 614
Psp6I CCWGG 1 cut(s) 43
PspFI CCCAGC 1 cut(s) 140
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 352
PspPI GGNCC 1 cut(s) 227
PsuI RGATCY 1 cut(s) 21
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 2 cut(s) 352, 358
RsaNI GTAC 2 cut(s) 351, 357
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 3 cut(s) 138, 430, 502
Sau3AI GATC 4 cut(s) 21, 49, 289, 373
Sau96I GGNCC 1 cut(s) 227
SchI GAGTC 1 cut(s) 615
ScrFI CCNGG 1 cut(s) 45
SetI ASST 8 cut(s) 46, 142, 182, 352, 356, 411, 434, 487
SexAI ACCWGGT 1 cut(s) 43
SfaNI GCATC 1 cut(s) 536
SfcI CTRYAG 2 cut(s) 318, 433
SinI GGWCC 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
Sse9I AATT 2 cut(s) 451, 468
SsiI CCGC 3 cut(s) 145, 222, 610
StyD4I CCNGG 1 cut(s) 43
TaaI ACNGT 2 cut(s) 167, 398
TasI AATT 2 cut(s) 451, 468
TfiI GAWTC 2 cut(s) 31, 205
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 3 cut(s) 137, 429, 501
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 3 cut(s) 160, 177, 541
TspGWI ACGGA 1 cut(s) 523
Van91I CCANNNNNTGG 1 cut(s) 589
VpaK11BI GGWCC 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.