FvH4_1g27210

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
18958442 .. 18962387
3946 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g27210.t1

Sequence Viewer

Length: 1593 bp
ATGGGTTGGCTTTCAAACAAGATCAACAGGGACCAACTCAAACCTGGTGATCATATCTATTCATGGAGGACGGGCTACCTCTATGCCCATCATGGGATATATGTCGGTGAGGGAAAGGTTATCCACTTCACTCAGGCAGCTAGGCAGGAAATTGGCACAGGAACTGTGTTAGACCGTTTCATTTTCAGCTCATCTCCATCCCATTCCTCACAGAATCCCTGCACGAGTTGTGATGAATCATTGGGGCATGGTGGTGGTGTGATATCTTCTTGCCTATATTGTTTTTTGTCTGGTGGTGATCTAAATCTCTTTGAATATGGTGTCAGTCGAACCTTTTTTATTGCGAAAGTCAGAGGGGGTACCTGTACCTTTGCCAAATCTGACCCACCTGAAGATGTCCTTCACCGTGCCCGTTACCTTGTCCAGAATGGTTTTGGCAACTACAGTCTTTTTGGAAACAATTGCGAAGACTTTGCAATTTATTGCAAAACAGAGTTGTGCGTTAGTAAGGGAAGGAGTGGGCAGGCAGCCTTGTTTTCCTCTTCTGTGAAAGGTGTTACTTTCTCTTCAGCTGCATATTTGGCTACTACTTTTAGTGGTCTGAGTGCTGCAACTGCTGGCATATATAGTTTCAATCGATACATTTGTGATATTGGTATCCGCAGTGATGCTTCAAGAGTGCCAGTAGAGAATCTTATCCCAGTTCCACCAGTAAGATCTGCACCCCAGCCTAGCAGCACTCGGTTTCTGGCATATGAAGAACTTGAACAAGCAACAAACAACTTTGAATCTGCAAATATACTTGGAGAGGGTTGTTTTGGCCAGGTTTTCAAAGGTGTTTTAACTAACGGTACAGCTGTAGCGATTAAAAGACTTAATAATGGAAGGAAACAAGGTGACAATGAGTTCTTAGTGGCGGTTGAGATGCTTAGTAGGCTGCATCATCGTAATCTTGTGAAGCTTGTCGGTTACTATAGCAGTCGTGACTCCTCACAAAACTTACTTTGCTATGAGCTTGTGCCAAATGGAAACTTGGAGGCTTGGCTCCATGGTCCCCTGGGATTGAATTGTCGTTTGGATTGGGACACCAGAATGAAGATTGCACTTGATGCTGCCAGAGGGCTTGCTTACCTTCACGAGGACTCACAACCTTGTGTTATCCACAGAGATTTTAAAGCATCCAATATATTGCTGGAGAAGGATTTTCATGCCAAAGTTGCTGATTTTGGCCTGGCTAAACTGGCACCTGAAGGCACATTTGGGTATGTTGCTCCAGAGCACACCATGACTGGAGACCTATTAGTTAAAACTGATGTTTACAGCTATGGGGTCGTCCTTCTTGAATTACTCAGCGGAAGAAGGCCTGTAGATGTGTCACAGCCATCTGGGAAGGAAAATGTTGTCACTTGGGCAAGGTCAATTCGTAGAGACAAGAATCAGCTGAAAGTGCTTGCTGATCCTAGTCTTGGCGCAAAGTTCCGAATGGAAGATTTTGAACGAGTTTGCTCCATTGCAGTAGCTTGTGTTGCCTCCGAGTCAAGCCAACGACCCACAATGGGTGAAGTGGTACAGTCACTGATGAGTCTGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

531

Amino Acids

58.13

Weight (kDa)

7.52

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 12 - 165 3.7e-27 Lecithin retinol acyltransferase
Pkinase PF00069 263 - 525 1.5e-38 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 265 - 526 1.4e-40 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 359
AccB1I GGYRCC 2 cut(s) 359, 1243
AciI CCGC 3 cut(s) 661, 917, 1353
AclWI GGATC 1 cut(s) 1451
AcoI YGGCCR 1 cut(s) 820
AcuI CTGAAG 3 cut(s) 411, 552, 1269
AfaI GTAC 4 cut(s) 361, 367, 853, 1569
AfiI CCNNNNNNNGG 4 cut(s) 93, 1138, 1466, 1556
AjnI CCWGG 4 cut(s) 43, 822, 1056, 1230
AjuI GAANNNNNNNTTGG 4 cut(s) 1058, 1090, 1242, 1274
AluBI AGCT 9 cut(s) 140, 189, 572, 857, 961, 1015, 1323, 1441, 1520
AluI AGCT 9 cut(s) 140, 189, 572, 857, 961, 1015, 1323, 1441, 1520
Alw21I GWGCWC 1 cut(s) 1281
Alw26I GTCTC 2 cut(s) 1287, 1422
AlwI GGATC 1 cut(s) 1451
AlwNI CAGNNNCTG 2 cut(s) 164, 1576
AoxI GGCC 3 cut(s) 820, 1228, 1361
ApeKI GCWGC 7 cut(s) 137, 527, 572, 608, 735, 937, 1112
Asp718I GGTACC 1 cut(s) 359
AspLEI GCGC 1 cut(s) 1472
AspS9I GGNCC 2 cut(s) 31, 1052
AsuHPI GGTGA 6 cut(s) 59, 119, 308, 395, 908, 1571
AvaII GGWCC 2 cut(s) 31, 1052
BaeGI GKGCMC 1 cut(s) 412
BaeI ACNNNNGTAYC 4 cut(s) 631, 664, 843, 876
BalI TGGCCA 1 cut(s) 822
BanI GGYRCC 2 cut(s) 359, 1243
BauI CACGAG 2 cut(s) 223, 1136
BbsI GAAGAC 1 cut(s) 474
Bbv12I GWGCWC 1 cut(s) 1281
BbvI GCAGC 7 cut(s) 149, 539, 559, 595, 747, 924, 1099
BccI CCATC 3 cut(s) 96, 205, 1390
BcgI CGANNNNNNTGC 2 cut(s) 455, 489
BciT130I CCWGG 4 cut(s) 45, 824, 1058, 1232
BciVI GTATCC 1 cut(s) 668
BclI TGATCA 1 cut(s) 49
BcoDI GTCTC 2 cut(s) 1287, 1422
BfaI CTAG 3 cut(s) 141, 732, 1461
BfmI CTRYAG 4 cut(s) 442, 858, 973, 1365
BfuI GTATCC 1 cut(s) 668
BglII AGATCT 1 cut(s) 716
BisI GCNGC 7 cut(s) 138, 528, 573, 609, 736, 938, 1113
BlsI GCNGC 7 cut(s) 139, 529, 574, 610, 737, 939, 1114
Bme1390I CCNGG 4 cut(s) 45, 824, 1058, 1232
Bme18I GGWCC 2 cut(s) 31, 1052
BmgT120I GGNCC 2 cut(s) 31, 1052
BmiI GGNNCC 5 cut(s) 32, 361, 1046, 1054, 1245
BmrFI CCNGG 4 cut(s) 45, 824, 1058, 1232
BmrI ACTGGG 1 cut(s) 695
BmsI GCATC 5 cut(s) 658, 915, 949, 1099, 1187
BmuI ACTGGG 1 cut(s) 695
BpiI GAAGAC 1 cut(s) 474
BpmI CTGGAG 3 cut(s) 1214, 1257, 1311
Bsa29I ATCGAT 1 cut(s) 637
BsaBI GATNNNNATC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 1287
BsaJI CCNNGG 3 cut(s) 1048, 1056, 1057
Bsc4I CCNNNNNNNGG 4 cut(s) 93, 1138, 1466, 1556
Bse1I ACTGG 5 cut(s) 683, 701, 710, 1245, 1294
Bse3DI GCAATG 1 cut(s) 1509
Bse8I GATNNNNATC 1 cut(s) 303
BseBI CCWGG 4 cut(s) 45, 824, 1058, 1232
BseCI ATCGAT 1 cut(s) 637
BseDI CCNNGG 3 cut(s) 1048, 1056, 1057
BseGI GGATG 2 cut(s) 197, 1178
BseJI GATNNNNATC 1 cut(s) 303
BseLI CCNNNNNNNGG 4 cut(s) 93, 1138, 1466, 1556
BseMI GCAATG 1 cut(s) 1509
BseMII CTCAG 3 cut(s) 146, 593, 1363
BseNI ACTGG 5 cut(s) 683, 701, 710, 1245, 1294
BseRI GAGGAG 1 cut(s) 979
BseSI GKGCMC 1 cut(s) 412
BseXI GCAGC 7 cut(s) 149, 539, 559, 595, 747, 924, 1099
BseYI CCCAGC 1 cut(s) 726
BsgI GTGCAG 2 cut(s) 205, 705
BshFI GGCC 3 cut(s) 822, 1230, 1363
BshNI GGYRCC 2 cut(s) 359, 1243
BshVI ATCGAT 1 cut(s) 637
BsiHKAI GWGCWC 1 cut(s) 1281
BslFI GGGAC 3 cut(s) 44, 1038, 1097
BslI CCNNNNNNNGG 4 cut(s) 93, 1138, 1466, 1556
BsmAI GTCTC 2 cut(s) 1287, 1422
BsmFI GGGAC 3 cut(s) 44, 1038, 1097
BsnI GGCC 3 cut(s) 822, 1230, 1363
Bso31I GGTCTC 1 cut(s) 1287
Bsp1286I GDGCHC 2 cut(s) 412, 1281
Bsp143I GATC 5 cut(s) 21, 49, 298, 716, 1456
Bsp19I CCATGG 1 cut(s) 1048
BspACI CCGC 3 cut(s) 661, 917, 1353
BspANI GGCC 3 cut(s) 822, 1230, 1363
BspCNI CTCAG 3 cut(s) 145, 594, 1362
BspDI ATCGAT 1 cut(s) 637
BspLI GGNNCC 5 cut(s) 32, 361, 1046, 1054, 1245
BspPI GGATC 1 cut(s) 1451
BspT107I GGYRCC 2 cut(s) 359, 1243
BspTNI GGTCTC 1 cut(s) 1287
BsrDI GCAATG 1 cut(s) 1509
BsrI ACTGG 5 cut(s) 683, 701, 710, 1245, 1294
BssECI CCNNGG 3 cut(s) 1048, 1056, 1057
BssMI GATC 5 cut(s) 21, 49, 298, 716, 1456
BssSI CACGAG 2 cut(s) 223, 1136
BssT1I CCWWGG 1 cut(s) 1048
Bst2BI CACGAG 2 cut(s) 223, 1136
Bst2UI CCWGG 4 cut(s) 45, 824, 1058, 1232
Bst4CI ACNGT 6 cut(s) 166, 176, 407, 446, 851, 1572
Bst6I CTCTTC 2 cut(s) 547, 571
BstAPI GCANNNNNTGC 1 cut(s) 1109
BstC8I GCNNGC 4 cut(s) 525, 619, 1125, 1452
BstDEI CTNAG 5 cut(s) 132, 602, 910, 929, 1349
BstDSI CCRYGG 1 cut(s) 1048
BstENI CCTNNNNNAGG 1 cut(s) 1136
BstF5I GGATG 2 cut(s) 197, 1178
BstHHI GCGC 1 cut(s) 1472
BstKTI GATC 5 cut(s) 24, 52, 301, 719, 1459
BstMAI GTCTC 2 cut(s) 1287, 1422
BstMBI GATC 5 cut(s) 21, 49, 298, 716, 1456
BstMWI GCNNNNNNNGC 8 cut(s) 581, 614, 934, 1109, 1217, 1241, 1447, 1526
BstNI CCWGG 4 cut(s) 45, 824, 1058, 1232
BstSCI CCNGG 4 cut(s) 43, 822, 1056, 1230
BstSFI CTRYAG 4 cut(s) 442, 858, 973, 1365
BstSLI GKGCMC 1 cut(s) 412
BstV1I GCAGC 7 cut(s) 149, 539, 559, 595, 747, 924, 1099
BstV2I GAAGAC 1 cut(s) 474
BstX2I RGATCY 1 cut(s) 716
BstYI RGATCY 1 cut(s) 716
Bsu15I ATCGAT 1 cut(s) 637
BsuI GTATCC 1 cut(s) 668
BsuRI GGCC 3 cut(s) 822, 1230, 1363
BsuTUI ATCGAT 1 cut(s) 637
BtgI CCRYGG 1 cut(s) 1048
BtsCI GGATG 2 cut(s) 197, 1178
BtsI GCAGTG 1 cut(s) 670
BtsIMutI CAGTG 2 cut(s) 670, 1574
Cac8I GCNNGC 4 cut(s) 525, 619, 1125, 1452
CaiI CAGNNNCTG 2 cut(s) 164, 1576
CfoI GCGC 1 cut(s) 1472
Cfr13I GGNCC 2 cut(s) 31, 1052
ClaI ATCGAT 1 cut(s) 637
CsiI ACCWGGT 1 cut(s) 43
Csp6I GTAC 4 cut(s) 360, 366, 852, 1568
CviAII CATG 6 cut(s) 63, 92, 248, 1049, 1208, 1285
CviQI GTAC 4 cut(s) 360, 366, 852, 1568
DdeI CTNAG 5 cut(s) 132, 602, 910, 929, 1349
DpnI GATC 5 cut(s) 23, 51, 300, 718, 1458
DpnII GATC 5 cut(s) 21, 49, 298, 716, 1456
DraI TTTAAA 1 cut(s) 1174
EaeI YGGCCR 1 cut(s) 820
Eam1104I CTCTTC 2 cut(s) 547, 571
EarI CTCTTC 2 cut(s) 547, 571
Eco130I CCWWGG 1 cut(s) 1048
Eco147I AGGCCT 1 cut(s) 1363
Eco31I GGTCTC 1 cut(s) 1287
Eco32I GATATC 1 cut(s) 264
Eco47I GGWCC 2 cut(s) 31, 1052
Eco57I CTGAAG 3 cut(s) 411, 552, 1269
EcoNI CCTNNNNNAGG 1 cut(s) 1136
EcoRII CCWGG 4 cut(s) 43, 822, 1056, 1230
EcoRV GATATC 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 1048
ErhI CCWWGG 1 cut(s) 1048
FaeI CATG 6 cut(s) 66, 95, 251, 1052, 1211, 1288
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FaqI GGGAC 3 cut(s) 44, 1038, 1097
FatI CATG 6 cut(s) 62, 91, 247, 1048, 1207, 1284
FauNDI CATATG 1 cut(s) 754
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 7 cut(s) 138, 528, 573, 609, 736, 938, 1113
FokI GGATG 2 cut(s) 184, 1165
Fsp4HI GCNGC 7 cut(s) 138, 528, 573, 609, 736, 938, 1113
FspBI CTAG 3 cut(s) 141, 732, 1461
GlaI GCGC 1 cut(s) 1471
GluI GCNGC 7 cut(s) 138, 528, 573, 609, 736, 938, 1113
GsaI CCCAGC 1 cut(s) 730
GsuI CTGGAG 3 cut(s) 1214, 1257, 1311
HaeIII GGCC 3 cut(s) 822, 1230, 1363
HhaI GCGC 1 cut(s) 1472
Hin1II CATG 6 cut(s) 66, 95, 251, 1052, 1211, 1288
Hin6I GCGC 1 cut(s) 1470
HinP1I GCGC 1 cut(s) 1470
HindIII AAGCTT 1 cut(s) 959
HinfI GANTC 9 cut(s) 214, 236, 691, 788, 986, 1142, 1435, 1535, 1582
HphI GGTGA 6 cut(s) 59, 119, 308, 395, 908, 1571
Hpy166II GTNNAC 1 cut(s) 1318
Hpy188I TCNGA 5 cut(s) 353, 382, 603, 1481, 1534
Hpy188III TCNNGA 6 cut(s) 424, 675, 983, 1136, 1274, 1340
Hpy8I GTNNAC 1 cut(s) 1318
HpyAV CCTTC 9 cut(s) 410, 507, 879, 1142, 1192, 1244, 1346, 1353, 1384
HpyCH4III ACNGT 6 cut(s) 166, 176, 407, 446, 851, 1572
HpyF10VI GCNNNNNNNGC 8 cut(s) 581, 614, 934, 1109, 1217, 1241, 1447, 1526
HpyF3I CTNAG 5 cut(s) 132, 602, 910, 929, 1349
Hsp92II CATG 6 cut(s) 66, 95, 251, 1052, 1211, 1288
HspAI GCGC 1 cut(s) 1470
KpnI GGTACC 1 cut(s) 363
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 5 cut(s) 21, 49, 298, 716, 1456
LmnI GCTCC 3 cut(s) 1050, 1276, 1511
Lsp1109I GCAGC 7 cut(s) 149, 539, 559, 595, 747, 924, 1099
LweI GCATC 5 cut(s) 658, 915, 949, 1099, 1187
MabI ACCWGGT 1 cut(s) 43
MaeI CTAG 3 cut(s) 141, 732, 1461
MaeIII GTNAC 8 cut(s) 413, 556, 896, 968, 983, 1374, 1402, 1572
MalI GATC 5 cut(s) 23, 51, 300, 718, 1458
MboI GATC 5 cut(s) 21, 49, 298, 716, 1456
MboII GAAGA 9 cut(s) 258, 404, 479, 534, 558, 770, 1108, 1368, 1499
MfeI CAATTG 1 cut(s) 460
MflI RGATCY 1 cut(s) 716
MhlI GDGCHC 2 cut(s) 412, 1281
MlsI TGGCCA 1 cut(s) 822
MluCI AATT 6 cut(s) 150, 460, 477, 1066, 1343, 1419
MluNI TGGCCA 1 cut(s) 822
MlyI GAGTC 4 cut(s) 980, 1136, 1544, 1591
Mox20I TGGCCA 1 cut(s) 822
MscI TGGCCA 1 cut(s) 822
MseI TTAA 6 cut(s) 842, 867, 876, 1173, 1305, 1591
MslI CAYNNNNRTG 2 cut(s) 252, 1091
Msp20I TGGCCA 1 cut(s) 822
MspA1I CMGCKG 4 cut(s) 572, 857, 1353, 1441
MspR9I CCNGG 4 cut(s) 45, 824, 1058, 1232
MunI CAATTG 1 cut(s) 460
MvaI CCWGG 4 cut(s) 45, 824, 1058, 1232
MwoI GCNNNNNNNGC 8 cut(s) 581, 614, 934, 1109, 1217, 1241, 1447, 1526
NcoI CCATGG 1 cut(s) 1048
NdeI CATATG 1 cut(s) 754
NdeII GATC 5 cut(s) 21, 49, 298, 716, 1456
NlaIII CATG 6 cut(s) 66, 95, 251, 1052, 1211, 1288
NlaIV GGNNCC 5 cut(s) 32, 361, 1046, 1054, 1245
NmuCI GTSAC 5 cut(s) 896, 983, 1374, 1402, 1572
PasI CCCWGGG 1 cut(s) 1057
PceI AGGCCT 1 cut(s) 1363
PfeI GAWTC 5 cut(s) 214, 236, 691, 788, 1435
PkrI GCNGC 7 cut(s) 139, 529, 574, 610, 737, 939, 1114
PleI GAGTC 4 cut(s) 980, 1136, 1543, 1590
PpsI GAGTC 4 cut(s) 980, 1136, 1543, 1590
Psp6I CCWGG 4 cut(s) 43, 822, 1056, 1230
PspFI CCCAGC 1 cut(s) 726
PspGI CCWGG 4 cut(s) 43, 822, 1056, 1230
PspN4I GGNNCC 5 cut(s) 32, 361, 1046, 1054, 1245
PspPI GGNCC 2 cut(s) 31, 1052
PstNI CAGNNNCTG 2 cut(s) 164, 1576
PsuI RGATCY 1 cut(s) 716
PvuII CAGCTG 3 cut(s) 572, 857, 1441
RsaI GTAC 4 cut(s) 361, 367, 853, 1569
RsaNI GTAC 4 cut(s) 360, 366, 852, 1568
RseI CAYNNNNRTG 2 cut(s) 252, 1091
SaqAI TTAA 6 cut(s) 842, 867, 876, 1173, 1305, 1591
SatI GCNGC 7 cut(s) 138, 528, 573, 609, 736, 938, 1113
Sau3AI GATC 5 cut(s) 21, 49, 298, 716, 1456
Sau96I GGNCC 2 cut(s) 31, 1052
SchI GAGTC 4 cut(s) 980, 1136, 1544, 1591
ScrFI CCNGG 4 cut(s) 45, 824, 1058, 1232
SduI GDGCHC 2 cut(s) 412, 1281
SexAI ACCWGGT 1 cut(s) 43
SfaNI GCATC 5 cut(s) 658, 915, 949, 1099, 1187
SfcI CTRYAG 4 cut(s) 442, 858, 973, 1365
SinI GGWCC 2 cut(s) 31, 1052
SmiMI CAYNNNNRTG 2 cut(s) 252, 1091
Sse9I AATT 6 cut(s) 150, 460, 477, 1066, 1343, 1419
SseBI AGGCCT 1 cut(s) 1363
SsiI CCGC 3 cut(s) 661, 917, 1353
SspMI CTAG 3 cut(s) 141, 732, 1461
StuI AGGCCT 1 cut(s) 1363
StyD4I CCNGG 4 cut(s) 43, 822, 1056, 1230
StyI CCWWGG 1 cut(s) 1048
TaaI ACNGT 6 cut(s) 166, 176, 407, 446, 851, 1572
TaqI TCGA 2 cut(s) 328, 637
TasI AATT 6 cut(s) 150, 460, 477, 1066, 1343, 1419
TfiI GAWTC 5 cut(s) 214, 236, 691, 788, 1435
Tru1I TTAA 6 cut(s) 842, 867, 876, 1173, 1305, 1591
Tru9I TTAA 6 cut(s) 842, 867, 876, 1173, 1305, 1591
TscAI CASTG 2 cut(s) 670, 1581
TseFI GTSAC 5 cut(s) 896, 983, 1374, 1402, 1572
TseI GCWGC 7 cut(s) 137, 527, 572, 608, 735, 937, 1112
Tsp45I GTSAC 5 cut(s) 896, 983, 1374, 1402, 1572
TspDTI ATGAA 6 cut(s) 51, 169, 249, 771, 1109, 1196
TspRI CASTG 2 cut(s) 670, 1581
VpaK11BI GGWCC 2 cut(s) 31, 1052
XagI CCTNNNNNAGG 1 cut(s) 1136
XcmI CCANNNNNNNNNTGG 3 cut(s) 41, 431, 1189
XspI CTAG 3 cut(s) 141, 732, 1461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.