RH3DG315800

NC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0003430
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG315800.1

Sequence Viewer

Length: 828 bp
ATGAATCAGAATTGGGTCTTCGGAATTCATTCCCATTTGCAGAAATCGAAATCGAAAGCAATGGGTGTGCTGTCAAACAAGATCGACAGGGATCAACTCAAACCTGGTGATCATATCTATACATGGAGAAACGCCTACCTCTATGCCCATCACGGGATATATGTCGGTGAGGGAAAGGTTATCCACTTCACTCGGGCAGCTGGGCGGGAAATTGGCACAGGAACTGTGTTAGACCGTTTCATTTTCAGCTCATCTCCATCCCATTCTTCAGAGAATCCCTGCACGAATTGCGATGATCCATCAGGGCGTGATGGCGGTGTCATGTCTTCTTGCCTAGACTGTTTTCTGTCTGGTGGTGATCTGTACCGCTTTGAATATGGTGTCAATCCAGCTTTCTTTATTGCCAAAGCCAGAGGAGGTACCTGTACCCTTGCCTCATCTGACCCATTTGAAGATGTCCTTCACCGTGCCTTTTTCCTTCTCCAGAATGGTTTTGGGAGCTACTGCCTTTTCAAAAACAATTGTGAAGACTTTGCAATTTATTGCAAAACAGGTTTGCTTGTGTTCACTAGCATTAGTGTGGGAAGGAGTGGGCAGGCAGCCTCCATTTTCTCTGCTGCAAGTGCTATTGCTTGTTCACCGGCTCGATATTTGACTACTACTTTTAGTGGTCTGAGTGCTTTCGGTGCTGGAATTTATTGTCTCCATCGATTGGTTTGTGATATTGGAATCCGCCGTGATGTTTCAAAAGTGCCAGTTGAGAGACTAGTTGATCGGGTAGGCTTCGTCGAGTCGGTGGTTGCAACTGAGATGGTCAAGCGACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

275

Amino Acids

30.08

Weight (kDa)

8.46

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 32 - 187 3.8e-27 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 419
AccB1I GGYRCC 1 cut(s) 419
AccB7I CCANNNNNTGG 1 cut(s) 712
AciI CCGC 4 cut(s) 205, 315, 367, 733
AclWI GGATC 2 cut(s) 99, 290
AcsI RAATTY 2 cut(s) 24, 693
AcuI CTGAAG 1 cut(s) 252
AfaI GTAC 3 cut(s) 365, 421, 427
AfiI CCNNNNNNNGG 2 cut(s) 153, 712
AgsI TTSAA 4 cut(s) 374, 452, 514, 747
AhlI ACTAGT 1 cut(s) 766
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 4 cut(s) 200, 249, 392, 501
AluI AGCT 4 cut(s) 200, 249, 392, 501
Alw26I GTCTC 2 cut(s) 707, 757
AlwI GGATC 2 cut(s) 99, 290
AlwNI CAGNNNCTG 1 cut(s) 224
Ama87I CYCGRG 1 cut(s) 192
ApeKI GCWGC 3 cut(s) 197, 599, 617
ApoI RAATTY 2 cut(s) 24, 693
Asp700I GAANNNNTTC 1 cut(s) 28
Asp718I GGTACC 1 cut(s) 419
AsuHPI GGTGA 5 cut(s) 119, 179, 368, 455, 630
AvaI CYCGRG 1 cut(s) 192
BanI GGYRCC 1 cut(s) 419
BbsI GAAGAC 3 cut(s) 10, 318, 534
BbvI GCAGC 3 cut(s) 209, 604, 611
BccI CCATC 6 cut(s) 156, 265, 305, 307, 714, 805
BceAI ACGGC 1 cut(s) 720
BciT130I CCWGG 1 cut(s) 105
BclI TGATCA 1 cut(s) 109
BcoDI GTCTC 2 cut(s) 707, 757
BcuI ACTAGT 1 cut(s) 766
BfaI CTAG 3 cut(s) 335, 570, 767
BisI GCNGC 3 cut(s) 198, 600, 618
BlsI GCNGC 3 cut(s) 199, 601, 619
Bme1390I CCNGG 1 cut(s) 105
BmeT110I CYCGRG 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 421
BmrFI CCNGG 1 cut(s) 105
BpiI GAAGAC 3 cut(s) 10, 318, 534
BpmI CTGGAG 1 cut(s) 467
Bsa29I ATCGAT 1 cut(s) 709
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 712
Bse118I RCCGGY 1 cut(s) 640
Bse1I ACTGG 1 cut(s) 755
Bse3DI GCAATG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 105
BseCI ATCGAT 1 cut(s) 709
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 2 cut(s) 153, 712
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 2 cut(s) 665, 798
BseNI ACTGG 1 cut(s) 755
BseRI GAGGAG 1 cut(s) 429
BseXI GCAGC 3 cut(s) 209, 604, 611
BseYI CCCAGC 1 cut(s) 200
BsgI GTGCAG 1 cut(s) 265
BshNI GGYRCC 1 cut(s) 419
BshVI ATCGAT 1 cut(s) 709
BsiHKCI CYCGRG 1 cut(s) 192
BsiSI CCGG 1 cut(s) 641
BslI CCNNNNNNNGG 2 cut(s) 153, 712
BsmAI GTCTC 2 cut(s) 707, 757
BsoBI CYCGRG 1 cut(s) 192
Bsp143I GATC 6 cut(s) 81, 91, 109, 295, 358, 772
BspACI CCGC 4 cut(s) 205, 315, 367, 733
BspCNI CTCAG 2 cut(s) 666, 799
BspDI ATCGAT 1 cut(s) 709
BspLI GGNNCC 1 cut(s) 421
BspPI GGATC 2 cut(s) 99, 290
BspT107I GGYRCC 1 cut(s) 419
BsrDI GCAATG 1 cut(s) 66
BsrFI RCCGGY 1 cut(s) 640
BsrI ACTGG 1 cut(s) 755
BssAI RCCGGY 1 cut(s) 640
BssMI GATC 6 cut(s) 81, 91, 109, 295, 358, 772
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 5 cut(s) 226, 236, 341, 467, 825
BstAPI GCANNNNNTGC 1 cut(s) 288
BstC8I GCNNGC 1 cut(s) 597
BstDEI CTNAG 2 cut(s) 674, 807
BstF5I GGATG 1 cut(s) 257
BstKTI GATC 6 cut(s) 84, 94, 112, 298, 361, 775
BstMAI GTCTC 2 cut(s) 707, 757
BstMBI GATC 6 cut(s) 81, 91, 109, 295, 358, 772
BstMWI GCNNNNNNNGC 3 cut(s) 288, 623, 686
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstV1I GCAGC 3 cut(s) 209, 604, 611
BstV2I GAAGAC 3 cut(s) 10, 318, 534
Bsu15I ATCGAT 1 cut(s) 709
BsuTUI ATCGAT 1 cut(s) 709
BtgZI GCGATG 1 cut(s) 306
BtsCI GGATG 1 cut(s) 257
Cac8I GCNNGC 1 cut(s) 597
CaiI CAGNNNCTG 1 cut(s) 224
Cfr10I RCCGGY 1 cut(s) 640
ClaI ATCGAT 1 cut(s) 709
CsiI ACCWGGT 1 cut(s) 103
Csp6I GTAC 3 cut(s) 364, 420, 426
CviAII CATG 2 cut(s) 123, 322
CviJI RGCY 8 cut(s) 200, 249, 392, 410, 501, 602, 644, 783
CviKI_1 RGCY 8 cut(s) 200, 249, 392, 410, 501, 602, 644, 783
CviQI GTAC 3 cut(s) 364, 420, 426
DdeI CTNAG 2 cut(s) 674, 807
DpnI GATC 6 cut(s) 83, 93, 111, 297, 360, 774
DpnII GATC 6 cut(s) 81, 91, 109, 295, 358, 772
EciI GGCGGA 1 cut(s) 722
Eco57I CTGAAG 1 cut(s) 252
Eco88I CYCGRG 1 cut(s) 192
EcoRI GAATTC 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 103
FaeI CATG 2 cut(s) 126, 325
FaiI YATR 8 cut(s) 114, 120, 124, 144, 160, 162, 323, 378
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FatI CATG 2 cut(s) 122, 321
FauI CCCGC 1 cut(s) 198
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 3 cut(s) 198, 600, 618
FokI GGATG 1 cut(s) 244
Fsp4HI GCNGC 3 cut(s) 198, 600, 618
FspBI CTAG 3 cut(s) 335, 570, 767
GluI GCNGC 3 cut(s) 198, 600, 618
GsaI CCCAGC 1 cut(s) 204
GsuI CTGGAG 1 cut(s) 467
HapII CCGG 1 cut(s) 641
Hin1II CATG 2 cut(s) 126, 325
HinfI GANTC 4 cut(s) 4, 274, 729, 791
HpaII CCGG 1 cut(s) 641
HphI GGTGA 5 cut(s) 119, 179, 368, 455, 630
Hpy166II GTNNAC 2 cut(s) 567, 638
Hpy188I TCNGA 5 cut(s) 9, 23, 271, 442, 675
Hpy188III TCNNGA 1 cut(s) 484
Hpy8I GTNNAC 2 cut(s) 567, 638
Hpy99I CGWCG 1 cut(s) 791
HpyAV CCTTC 3 cut(s) 470, 488, 579
HpyCH4III ACNGT 5 cut(s) 226, 236, 341, 467, 825
HpyCH4V TGCA 6 cut(s) 40, 282, 536, 546, 620, 803
HpyF10VI GCNNNNNNNGC 3 cut(s) 288, 623, 686
HpyF3I CTNAG 2 cut(s) 674, 807
Hsp92II CATG 2 cut(s) 126, 325
KpnI GGTACC 1 cut(s) 423
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 6 cut(s) 81, 91, 109, 295, 358, 772
LmnI GCTCC 1 cut(s) 498
Lsp1109I GCAGC 3 cut(s) 209, 604, 611
MabI ACCWGGT 1 cut(s) 103
MaeI CTAG 3 cut(s) 335, 570, 767
MalI GATC 6 cut(s) 83, 93, 111, 297, 360, 774
MboI GATC 6 cut(s) 81, 91, 109, 295, 358, 772
MboII GAAGA 5 cut(s) 10, 258, 318, 464, 539
MfeI CAATTG 1 cut(s) 520
MluCI AATT 7 cut(s) 10, 24, 210, 286, 520, 537, 693
MlyI GAGTC 1 cut(s) 800
MnlI CCTC 6 cut(s) 149, 163, 407, 410, 445, 613
MroXI GAANNNNTTC 1 cut(s) 28
MslI CAYNNNNRTG 1 cut(s) 578
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 1 cut(s) 641
MspR9I CCNGG 1 cut(s) 105
MunI CAATTG 1 cut(s) 520
MvaI CCWGG 1 cut(s) 105
MwoI GCNNNNNNNGC 3 cut(s) 288, 623, 686
NdeII GATC 6 cut(s) 81, 91, 109, 295, 358, 772
NlaIII CATG 2 cut(s) 126, 325
NlaIV GGNNCC 1 cut(s) 421
PdmI GAANNNNTTC 1 cut(s) 28
PfeI GAWTC 3 cut(s) 4, 274, 729
PflMI CCANNNNNTGG 1 cut(s) 712
PkrI GCNGC 3 cut(s) 199, 601, 619
PleI GAGTC 1 cut(s) 799
PpsI GAGTC 1 cut(s) 799
Psp6I CCWGG 1 cut(s) 103
PspFI CCCAGC 1 cut(s) 200
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 421
PstNI CAGNNNCTG 1 cut(s) 224
PvuII CAGCTG 1 cut(s) 200
RsaI GTAC 3 cut(s) 365, 421, 427
RsaNI GTAC 3 cut(s) 364, 420, 426
RseI CAYNNNNRTG 1 cut(s) 578
SatI GCNGC 3 cut(s) 198, 600, 618
Sau3AI GATC 6 cut(s) 81, 91, 109, 295, 358, 772
SchI GAGTC 1 cut(s) 800
ScrFI CCNGG 1 cut(s) 105
SexAI ACCWGGT 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 578
SpeI ACTAGT 1 cut(s) 766
Sse9I AATT 7 cut(s) 10, 24, 210, 286, 520, 537, 693
SsiI CCGC 4 cut(s) 205, 315, 367, 733
SspMI CTAG 3 cut(s) 335, 570, 767
StyD4I CCNGG 1 cut(s) 103
TaaI ACNGT 5 cut(s) 226, 236, 341, 467, 825
TaqI TCGA 6 cut(s) 47, 53, 84, 646, 709, 789
TasI AATT 7 cut(s) 10, 24, 210, 286, 520, 537, 693
TfiI GAWTC 3 cut(s) 4, 274, 729
TseI GCWGC 3 cut(s) 197, 599, 617
TspDTI ATGAA 3 cut(s) 17, 17, 229
Van91I CCANNNNNTGG 1 cut(s) 712
XapI RAATTY 2 cut(s) 24, 693
XcmI CCANNNNNNNNNTGG 1 cut(s) 491
XmnI GAANNNNTTC 1 cut(s) 28
XspI CTAG 3 cut(s) 335, 570, 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.