Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003430

Physical Location & Seq

Genomic Coordinates Forward (+)

713450 .. 715651

Gene Structure 2202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G011400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGGGGTGCTCTCAAACAAGATCCAGAGGGATCAACTCAGACCTGGAGATCATATTTATTCCTGGAGGCGCGCCTACCTCTATGCCCATCACGGGATATATGTCGGTGAGGGAAAGGTTATCCACTTCACTCGGGGAGCTGGCCAGGAAATTGGCACAGGAACTGTGTTAGACCGCATCATTTTCAGCTCCTCCCCATCCCATTCCCCGGACAATCCCTGCCCAAAATGCGGTGATCAATCAAGTCTTGACGGTGTCATGTCTTCTTGCATAGATTGTTTTCTATCTGGCGGTGATCTCTACCTCTTTGAATATGGTGTCAATGCTGCTTTCTTTATTGCCAAAGCTAGAGGGGGTACCTGTACGCTTGCCGCGTCTGACCCACAACAAGATGTCCTTCATCGTGCTTTTTATCTTCTCCAGAATGGTTTTGGTAGTTATGACATTTTCAAAAACAACTGTGAAGACTTTGCAATATATTGCAAAACAGGTTTGCTCGTGTACACTAGCATTAGTGTGGGCAGGAGTGGACAGGCTGCTTCCTTTTTAGCAGCTGCAAGTGCTGTTATTTCTTCACCGCTTCGATTTTTGACTACTAGTTTTACTGGTCTGGGTGCTGTTGGTTGCGGCATGTATTGTGTTAGCCGATTGGTTTCTGATATCGGAATACGTCGTGATGTTATAAAAATTCCAGTGGAGAGACTTACTGCTCCGTGTGGCCTAGATGAGGCAGAGTTTGCGACTGAAGTGGTCAAGACAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRAT

Protein Analysis

255

Amino Acids

27.4

Weight (kDa)

6.29

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02700
fragaria_vesca	FvH4_1g27210 FvH4_1g27210 FvH4_1g27240 FvH4_1g27240
malus_domestica	MD09G1282900.v1.1 MD17G1272600.v1.1
prunus_persica	Prupe.3G011400_v2.0.a1
pyrus_communis	pycom09g19080 pycom17g27140
rosa_chinensis	RchiOBHm_Chr3g0487631 RchiOBHm_Chr3g0487641 RchiOBHm_Chr3g0487651
rosa_laevigata	RLG00000022986 RLG00000022987 RLG00000022991 RLG00000022994
rosa_multiflora	Rmu_sc0002995.1_g000025 Rmu_sc0012412.1_g000016 Rmu_sc0012412.1_g000021
rosa_roxburghii	Rroxscaffold_6G00394620 Rroxscaffold_6G00394630 Rroxscaffold_6G00394640
rosa_rugosa	Rorug03G0235100 Rorug03G0235200
rosa_samantha	Rh3AG283500 Rh3AG283600 Rh3BG319900 Rh3BG320000 Rh3BG320100 Rh3CG317700 Rh3DG315600 Rh3DG315800
rosa_wichuraiana	Rw3G025060 Rw3G025070 Rw3G025080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	683
Acc65I	GGTACC	1 cut(s)	356
AccB1I	GGYRCC	1 cut(s)	356
AccII	CGCG	2 cut(s)	72, 374
AciI	CCGC	6 cut(s)	175, 231, 291, 372, 578, 627
AclWI	GGATC	2 cut(s)	16, 39
AcoI	YGGCCR	1 cut(s)	142
AcsI	RAATTY	1 cut(s)	687
AcuI	CTGAAG	1 cut(s)	765
AfaI	GTAC	3 cut(s)	358, 364, 503
AfiI	CCNNNNNNNGG	4 cut(s)	93, 208, 230, 727
AgsI	TTSAA	2 cut(s)	311, 451
AhlI	ACTAGT	1 cut(s)	596
AjnI	CCWGG	3 cut(s)	43, 62, 144
AluBI	AGCT	4 cut(s)	140, 189, 347, 554
AluI	AGCT	4 cut(s)	140, 189, 347, 554
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	1 cut(s)	694
AlwI	GGATC	2 cut(s)	16, 39
AlwNI	CAGNNNCTG	1 cut(s)	164
Ama87I	CYCGRG	1 cut(s)	132
AoxI	GGCC	2 cut(s)	142, 718
ApeKI	GCWGC	4 cut(s)	326, 536, 551, 554
ApoI	RAATTY	1 cut(s)	687
AscI	GGCGCGCC	1 cut(s)	70
Asp718I	GGTACC	1 cut(s)	356
AspLEI	GCGC	2 cut(s)	72, 74
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	4 cut(s)	119, 245, 305, 567
AvaI	CYCGRG	1 cut(s)	132
BalI	TGGCCA	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	356
BauI	CACGAG	1 cut(s)	497
BbsI	GAAGAC	2 cut(s)	255, 471
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	4 cut(s)	313, 523, 541, 563
BccI	CCATC	2 cut(s)	96, 205
BciT130I	CCWGG	3 cut(s)	45, 64, 146
BclI	TGATCA	1 cut(s)	235
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	694
BcuI	ACTAGT	1 cut(s)	596
BfaI	CTAG	4 cut(s)	348, 507, 597, 722
BisI	GCNGC	6 cut(s)	327, 372, 537, 552, 555, 628
BlsI	GCNGC	6 cut(s)	328, 373, 538, 553, 556, 629
Bme1390I	CCNGG	4 cut(s)	45, 64, 146, 209
BmeT110I	CYCGRG	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	358
BmrFI	CCNGG	4 cut(s)	45, 64, 146, 209
BmsI	GCATC	1 cut(s)	186
BpiI	GAAGAC	2 cut(s)	255, 471
BpmI	CTGGAG	3 cut(s)	66, 85, 404
BpuMI	CCSGG	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	4 cut(s)	93, 208, 230, 727
Bse1I	ACTGG	2 cut(s)	610, 692
BseBI	CCWGG	3 cut(s)	45, 64, 146
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	197
BseLI	CCNNNNNNNGG	4 cut(s)	93, 208, 230, 727
BseMII	CTCAG	1 cut(s)	52
BseNI	ACTGG	2 cut(s)	610, 692
BsePI	GCGCGC	1 cut(s)	70
BseRI	GAGGAG	1 cut(s)	181
BseXI	GCAGC	4 cut(s)	313, 523, 541, 563
Bsh1236I	CGCG	2 cut(s)	72, 374
BshFI	GGCC	2 cut(s)	144, 720
BshNI	GGYRCC	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	12
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	209
BslI	CCNNNNNNNGG	4 cut(s)	93, 208, 230, 727
BsmAI	GTCTC	1 cut(s)	694
BsnI	GGCC	2 cut(s)	144, 720
BsoBI	CYCGRG	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp1407I	TGTACA	1 cut(s)	501
Bsp143I	GATC	5 cut(s)	21, 31, 49, 235, 295
BspACI	CCGC	6 cut(s)	175, 231, 291, 372, 578, 627
BspANI	GGCC	2 cut(s)	144, 720
BspCNI	CTCAG	1 cut(s)	51
BspFNI	CGCG	2 cut(s)	72, 374
BspLI	GGNNCC	1 cut(s)	358
BspPI	GGATC	2 cut(s)	16, 39
BspT107I	GGYRCC	1 cut(s)	356
BsrGI	TGTACA	1 cut(s)	501
BsrI	ACTGG	2 cut(s)	610, 692
BssECI	CCNNGG	1 cut(s)	207
BssHII	GCGCGC	1 cut(s)	70
BssMI	GATC	5 cut(s)	21, 31, 49, 235, 295
BssSI	CACGAG	1 cut(s)	497
Bst2BI	CACGAG	1 cut(s)	497
Bst2UI	CCWGG	3 cut(s)	45, 64, 146
Bst4CI	ACNGT	3 cut(s)	166, 254, 461
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstAUI	TGTACA	1 cut(s)	501
BstC8I	GCNNGC	3 cut(s)	72, 142, 369
BstDEI	CTNAG	1 cut(s)	38
BstENI	CCTNNNNNAGG	1 cut(s)	725
BstF5I	GGATG	1 cut(s)	197
BstFNI	CGCG	2 cut(s)	72, 374
BstHHI	GCGC	2 cut(s)	72, 74
BstKTI	GATC	5 cut(s)	24, 34, 52, 238, 298
BstMAI	GTCTC	1 cut(s)	694
BstMBI	GATC	5 cut(s)	21, 31, 49, 235, 295
BstMWI	GCNNNNNNNGC	3 cut(s)	228, 560, 737
BstNI	CCWGG	3 cut(s)	45, 64, 146
BstNSI	RCATGY	1 cut(s)	634
BstSCI	CCNGG	4 cut(s)	43, 62, 144, 207
BstUI	CGCG	2 cut(s)	72, 374
BstV1I	GCAGC	4 cut(s)	313, 523, 541, 563
BstV2I	GAAGAC	2 cut(s)	255, 471
BstX2I	RGATCY	1 cut(s)	21
BstXI	CCANNNNNNTGG	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	144, 720
BtsCI	GGATG	1 cut(s)	197
BtsIMutI	CAGTG	1 cut(s)	699
Cac8I	GCNNGC	3 cut(s)	72, 142, 369
CaiI	CAGNNNCTG	1 cut(s)	164
CfoI	GCGC	2 cut(s)	72, 74
CseI	GACGC	1 cut(s)	363
Csp6I	GTAC	3 cut(s)	357, 363, 502
CviAII	CATG	2 cut(s)	259, 631
CviJI	RGCY	8 cut(s)	140, 144, 189, 347, 536, 554, 645, 720
CviKI_1	RGCY	8 cut(s)	140, 144, 189, 347, 536, 554, 645, 720
CviQI	GTAC	3 cut(s)	357, 363, 502
DdeI	CTNAG	1 cut(s)	38
DpnI	GATC	5 cut(s)	23, 33, 51, 237, 297
DpnII	GATC	5 cut(s)	21, 31, 49, 235, 295
EaeI	YGGCCR	1 cut(s)	142
Eco32I	GATATC	1 cut(s)	661
Eco57I	CTGAAG	1 cut(s)	765
Eco88I	CYCGRG	1 cut(s)	132
EcoNI	CCTNNNNNAGG	1 cut(s)	725
EcoRII	CCWGG	3 cut(s)	43, 62, 144
EcoRV	GATATC	1 cut(s)	661
FaeI	CATG	2 cut(s)	262, 634
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FatI	CATG	2 cut(s)	258, 630
FbaI	TGATCA	1 cut(s)	235
Fnu4HI	GCNGC	6 cut(s)	327, 372, 537, 552, 555, 628
FokI	GGATG	1 cut(s)	184
Fsp4HI	GCNGC	6 cut(s)	327, 372, 537, 552, 555, 628
FspBI	CTAG	4 cut(s)	348, 507, 597, 722
GlaI	GCGC	2 cut(s)	71, 73
GluI	GCNGC	6 cut(s)	327, 372, 537, 552, 555, 628
GsuI	CTGGAG	3 cut(s)	66, 85, 404
HaeIII	GGCC	2 cut(s)	144, 720
HapII	CCGG	1 cut(s)	209
HgaI	GACGC	1 cut(s)	363
HhaI	GCGC	2 cut(s)	72, 74
Hin1II	CATG	2 cut(s)	262, 634
Hin6I	GCGC	2 cut(s)	70, 72
HinP1I	GCGC	2 cut(s)	70, 72
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	4 cut(s)	119, 245, 305, 567
Hpy166II	GTNNAC	3 cut(s)	502, 504, 530
Hpy188I	TCNGA	4 cut(s)	41, 379, 658, 665
Hpy188III	TCNNGA	5 cut(s)	25, 248, 421, 674, 754
Hpy8I	GTNNAC	3 cut(s)	502, 504, 530
Hpy99I	CGWCG	1 cut(s)	675
HpyAV	CCTTC	1 cut(s)	407
HpyCH4III	ACNGT	3 cut(s)	166, 254, 461
HpyCH4IV	ACGT	1 cut(s)	670
HpyCH4V	TGCA	4 cut(s)	270, 473, 483, 557
HpyF10VI	GCNNNNNNNGC	3 cut(s)	228, 560, 737
HpyF3I	CTNAG	1 cut(s)	38
HpySE526I	ACGT	1 cut(s)	670
Hsp92II	CATG	2 cut(s)	262, 634
HspAI	GCGC	2 cut(s)	70, 72
KpnI	GGTACC	1 cut(s)	360
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	5 cut(s)	21, 31, 49, 235, 295
LmnI	GCTCC	3 cut(s)	137, 194, 715
Lsp1109I	GCAGC	4 cut(s)	313, 523, 541, 563
LweI	GCATC	1 cut(s)	186
MaeI	CTAG	4 cut(s)	348, 507, 597, 722
MaeII	ACGT	1 cut(s)	670
MalI	GATC	5 cut(s)	23, 33, 51, 237, 297
MboI	GATC	5 cut(s)	21, 31, 49, 235, 295
MboII	GAAGA	4 cut(s)	255, 407, 476, 564
MflI	RGATCY	1 cut(s)	21
MhlI	GDGCHC	1 cut(s)	12
MlsI	TGGCCA	1 cut(s)	144
MluCI	AATT	2 cut(s)	150, 687
MluNI	TGGCCA	1 cut(s)	144
MnlI	CCTC	8 cut(s)	21, 60, 89, 103, 202, 314, 344, 721
Mox20I	TGGCCA	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	144
MseI	TTAA	1 cut(s)	763
MslI	CAYNNNNRTG	1 cut(s)	515
Msp20I	TGGCCA	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	554
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	4 cut(s)	45, 64, 146, 209
MvaI	CCWGG	3 cut(s)	45, 64, 146
MvnI	CGCG	2 cut(s)	72, 374
MwoI	GCNNNNNNNGC	3 cut(s)	228, 560, 737
NciI	CCSGG	1 cut(s)	209
NdeII	GATC	5 cut(s)	21, 31, 49, 235, 295
NlaIII	CATG	2 cut(s)	262, 634
NlaIV	GGNNCC	1 cut(s)	358
NspI	RCATGY	1 cut(s)	634
PalAI	GGCGCGCC	1 cut(s)	70
PauI	GCGCGC	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	1 cut(s)	371
PflFI	GACNNNGTC	1 cut(s)	254
PfoI	TCCNGGA	1 cut(s)	62
PkrI	GCNGC	6 cut(s)	328, 373, 538, 553, 556, 629
PsiI	TTATAA	1 cut(s)	683
Psp6I	CCWGG	3 cut(s)	43, 62, 144
PspGI	CCWGG	3 cut(s)	43, 62, 144
PspN4I	GGNNCC	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	21
PsyI	GACNNNGTC	1 cut(s)	254
PteI	GCGCGC	1 cut(s)	70
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	3 cut(s)	358, 364, 503
RsaNI	GTAC	3 cut(s)	357, 363, 502
RseI	CAYNNNNRTG	1 cut(s)	515
SaqAI	TTAA	1 cut(s)	763
SatI	GCNGC	6 cut(s)	327, 372, 537, 552, 555, 628
Sau3AI	GATC	5 cut(s)	21, 31, 49, 235, 295
ScrFI	CCNGG	4 cut(s)	45, 64, 146, 209
SduI	GDGCHC	1 cut(s)	12
SfaNI	GCATC	1 cut(s)	186
SgsI	GGCGCGCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	515
SpeI	ACTAGT	1 cut(s)	596
Sse9I	AATT	2 cut(s)	150, 687
SsiI	CCGC	6 cut(s)	175, 231, 291, 372, 578, 627
SspMI	CTAG	4 cut(s)	348, 507, 597, 722
StyD4I	CCNGG	4 cut(s)	43, 62, 144, 207
TaaI	ACNGT	3 cut(s)	166, 254, 461
TaiI	ACGT	1 cut(s)	673
TaqI	TCGA	1 cut(s)	583
TasI	AATT	2 cut(s)	150, 687
TatI	WGTACW	1 cut(s)	501
TauI	GCSGC	2 cut(s)	374, 630
Tru1I	TTAA	1 cut(s)	763
Tru9I	TTAA	1 cut(s)	763
TscAI	CASTG	1 cut(s)	699
TseI	GCWGC	4 cut(s)	326, 536, 551, 554
TspDTI	ATGAA	1 cut(s)	389
TspGWI	ACGGA	1 cut(s)	702
TspRI	CASTG	1 cut(s)	699
Tth111I	GACNNNGTC	1 cut(s)	254
XagI	CCTNNNNNAGG	1 cut(s)	725
XapI	RAATTY	1 cut(s)	687
XceI	RCATGY	1 cut(s)	634
XcmI	CCANNNNNNNNNTGG	1 cut(s)	428
XspI	CTAG	4 cut(s)	348, 507, 597, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.