Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012412.1

Orthogroup ID

OG0003430

Physical Location & Seq

Genomic Coordinates Forward (+)

76322 .. 77137

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012412.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

atggttatccacttcactcgggcagctgagcgggatattggcacaggaactgtgttagaccgtttcattttcagctcatctccatcccattcttcggagaatcgctgcacgacttgcggttatccttcagggcgtgatgatggtgtcatgtcttcttgtctagattgttttctgtctggtggtgatctgtacctctttgaatatggtgtcagtccagccttctttattgccaaagccagaggaggtacctgtacccttgccttgtctgatccatctgaagatgtccttcaccgtgcattttaccttctccagaatggttttggcagctacagcgtttccaaaaacaattgtgaagactttgcaatttattgcaaaacaggtttgcttgtgaatagtagcaatggtttgggaaggagtgggcaggcatcctccattttatctgttgcaaatgcaagtgcaaggcaggcatcctccattttatctgttgcaaatgcaagtgcaagtgggcgcttatcctccattttatctgttgcaaatgcaagtgcaaggcaggtatcctccattttatctgttgcaaatgcaagtgcaagtgggcaggcatcctccattttatctgttgcaagtgctattggttgttcaccggcacgatatttgcttactatgagtggtatgagtgctttcggtgctttcagtggtctgagtgttttcggtactggcatttattctctccatcgattggcttatgacattggagtccgctgtgatgtttcaaaagtaccagtagagaaactcgatcggttgatcgggttggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRAT

Protein Analysis

271

Amino Acids

28.14

Weight (kDa)

8.07

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02700
fragaria_vesca	FvH4_1g27210 FvH4_1g27210 FvH4_1g27240 FvH4_1g27240
malus_domestica	MD09G1282900.v1.1 MD17G1272600.v1.1
prunus_persica	Prupe.3G011400_v2.0.a1
pyrus_communis	pycom09g19080 pycom17g27140
rosa_chinensis	RchiOBHm_Chr3g0487631 RchiOBHm_Chr3g0487641 RchiOBHm_Chr3g0487651
rosa_laevigata	RLG00000022986 RLG00000022987 RLG00000022991 RLG00000022994
rosa_multiflora	Rmu_sc0002995.1_g000025 Rmu_sc0012412.1_g000016 Rmu_sc0012412.1_g000021
rosa_roxburghii	Rroxscaffold_6G00394620 Rroxscaffold_6G00394630 Rroxscaffold_6G00394640
rosa_rugosa	Rorug03G0235100 Rorug03G0235200
rosa_samantha	Rh3AG283500 Rh3AG283600 Rh3BG319900 Rh3BG320000 Rh3BG320100 Rh3CG317700 Rh3DG315600 Rh3DG315800
rosa_wichuraiana	Rw3G025060 Rw3G025070 Rw3G025080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	752
Acc36I	ACCTGC	1 cut(s)	541
Acc65I	GGTACC	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	245
AccB7I	CCANNNNNTGG	1 cut(s)	736
AccBSI	CCGCTC	1 cut(s)	31
AciI	CCGC	3 cut(s)	31, 117, 757
AclWI	GGATC	1 cut(s)	263
AcuI	CTGAAG	2 cut(s)	111, 297
AfaI	GTAC	5 cut(s)	191, 247, 253, 712, 777
AfiI	CCNNNNNNNGG	2 cut(s)	94, 736
AgsI	TTSAA	2 cut(s)	200, 771
AluBI	AGCT	3 cut(s)	26, 75, 327
AluI	AGCT	3 cut(s)	26, 75, 327
AlwI	GGATC	1 cut(s)	263
AlwNI	CAGNNNCTG	1 cut(s)	50
Ama87I	CYCGRG	1 cut(s)	18
ApeKI	GCWGC	3 cut(s)	23, 105, 324
Asp718I	GGTACC	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	510
AsuHPI	GGTGA	3 cut(s)	194, 281, 630
AvaI	CYCGRG	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	245
BbsI	GAAGAC	2 cut(s)	144, 360
BbvI	GCAGC	3 cut(s)	35, 92, 336
BccI	CCATC	4 cut(s)	91, 134, 280, 738
BciVI	GTATCC	1 cut(s)	565
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	328
BfoI	RGCGCY	1 cut(s)	511
BfuAI	ACCTGC	1 cut(s)	541
BfuI	GTATCC	1 cut(s)	565
BisI	GCNGC	3 cut(s)	24, 106, 325
BlpI	GCTNAGC	1 cut(s)	27
BlsI	GCNGC	3 cut(s)	25, 107, 326
BmeT110I	CYCGRG	1 cut(s)	18
BmiI	GGNNCC	1 cut(s)	247
BmsI	GCATC	3 cut(s)	434, 476, 608
BpiI	GAAGAC	2 cut(s)	144, 360
BpmI	CTGGAG	1 cut(s)	293
Bpu1102I	GCTNAGC	1 cut(s)	27
Bsa29I	ATCGAT	1 cut(s)	733
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 736
Bse118I	RCCGGY	1 cut(s)	640
Bse1I	ACTGG	2 cut(s)	718, 779
Bse3DI	GCAATG	1 cut(s)	406
BseCI	ATCGAT	1 cut(s)	733
BseGI	GGATG	4 cut(s)	83, 425, 467, 599
BseLI	CCNNNNNNNGG	2 cut(s)	94, 736
BseMI	GCAATG	1 cut(s)	406
BseMII	CTCAG	2 cut(s)	18, 689
BseNI	ACTGG	2 cut(s)	718, 779
BseRI	GAGGAG	1 cut(s)	255
BseXI	GCAGC	3 cut(s)	35, 92, 336
BsgI	GTGCAG	1 cut(s)	91
Bsh1285I	CGRYCG	1 cut(s)	796
BshNI	GGYRCC	1 cut(s)	245
BshVI	ATCGAT	1 cut(s)	733
BsiEI	CGRYCG	1 cut(s)	796
BsiHKCI	CYCGRG	1 cut(s)	18
BsiSI	CCGG	1 cut(s)	641
BslI	CCNNNNNNNGG	2 cut(s)	94, 736
BsoBI	CYCGRG	1 cut(s)	18
Bsp143I	GATC	4 cut(s)	184, 268, 793, 801
Bsp1720I	GCTNAGC	1 cut(s)	27
BspACI	CCGC	3 cut(s)	31, 117, 757
BspCNI	CTCAG	2 cut(s)	19, 690
BspDI	ATCGAT	1 cut(s)	733
BspLI	GGNNCC	1 cut(s)	247
BspMI	ACCTGC	1 cut(s)	541
BspPI	GGATC	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	245
BsrBI	CCGCTC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	406
BsrFI	RCCGGY	1 cut(s)	640
BsrI	ACTGG	2 cut(s)	718, 779
BssAI	RCCGGY	1 cut(s)	640
BssMI	GATC	4 cut(s)	184, 268, 793, 801
Bst4CI	ACNGT	3 cut(s)	52, 62, 293
BstAPI	GCANNNNNTGC	1 cut(s)	114
BstC8I	GCNNGC	3 cut(s)	423, 465, 597
BstDEI	CTNAG	3 cut(s)	27, 698, 813
BstF5I	GGATG	4 cut(s)	83, 425, 467, 599
BstH2I	RGCGCY	1 cut(s)	511
BstHHI	GCGC	1 cut(s)	510
BstKTI	GATC	4 cut(s)	187, 271, 796, 804
BstMBI	GATC	4 cut(s)	184, 268, 793, 801
BstMCI	CGRYCG	1 cut(s)	796
BstMWI	GCNNNNNNNGC	4 cut(s)	114, 330, 464, 683
BstSFI	CTRYAG	1 cut(s)	328
BstV1I	GCAGC	3 cut(s)	35, 92, 336
BstV2I	GAAGAC	2 cut(s)	144, 360
Bsu15I	ATCGAT	1 cut(s)	733
BsuI	GTATCC	1 cut(s)	565
BsuTUI	ATCGAT	1 cut(s)	733
BtsCI	GGATG	4 cut(s)	83, 425, 467, 599
BtsIMutI	CAGTG	1 cut(s)	697
BveI	ACCTGC	1 cut(s)	541
Cac8I	GCNNGC	3 cut(s)	423, 465, 597
CaiI	CAGNNNCTG	1 cut(s)	50
CfoI	GCGC	1 cut(s)	510
Cfr10I	RCCGGY	1 cut(s)	640
ClaI	ATCGAT	1 cut(s)	733
Csp6I	GTAC	5 cut(s)	190, 246, 252, 711, 776
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	7 cut(s)	26, 75, 218, 236, 327, 740, 812
CviKI_1	RGCY	7 cut(s)	26, 75, 218, 236, 327, 740, 812
CviQI	GTAC	5 cut(s)	190, 246, 252, 711, 776
DdeI	CTNAG	3 cut(s)	27, 698, 813
DpnI	GATC	4 cut(s)	186, 270, 795, 803
DpnII	GATC	4 cut(s)	184, 268, 793, 801
DrdI	GACNNNNNNGTC	1 cut(s)	752
DseDI	GACNNNNNNGTC	1 cut(s)	752
Eco57I	CTGAAG	2 cut(s)	111, 297
Eco88I	CYCGRG	1 cut(s)	18
FaeI	CATG	1 cut(s)	151
FaiI	YATR	5 cut(s)	149, 204, 662, 671, 744
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FatI	CATG	1 cut(s)	147
FauI	CCCGC	1 cut(s)	24
Fnu4HI	GCNGC	3 cut(s)	24, 106, 325
FokI	GGATG	4 cut(s)	70, 412, 454, 586
Fsp4HI	GCNGC	3 cut(s)	24, 106, 325
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	509
GluI	GCNGC	3 cut(s)	24, 106, 325
GsuI	CTGGAG	1 cut(s)	293
HaeII	RGCGCY	1 cut(s)	511
HapII	CCGG	1 cut(s)	641
HhaI	GCGC	1 cut(s)	510
Hin1II	CATG	1 cut(s)	151
Hin6I	GCGC	1 cut(s)	508
HinP1I	GCGC	1 cut(s)	508
HinfI	GANTC	2 cut(s)	100, 753
HpaII	CCGG	1 cut(s)	641
HphI	GGTGA	3 cut(s)	194, 281, 630
Hpy166II	GTNNAC	1 cut(s)	638
Hpy188I	TCNGA	4 cut(s)	97, 268, 277, 699
Hpy188III	TCNNGA	2 cut(s)	161, 310
Hpy8I	GTNNAC	1 cut(s)	638
HpyAV	CCTTC	5 cut(s)	135, 229, 296, 314, 405
HpyCH4III	ACNGT	3 cut(s)	52, 62, 293
HpyF10VI	GCNNNNNNNGC	4 cut(s)	114, 330, 464, 683
HpyF3I	CTNAG	3 cut(s)	27, 698, 813
Hsp92II	CATG	1 cut(s)	151
HspAI	GCGC	1 cut(s)	508
KpnI	GGTACC	1 cut(s)	249
Kzo9I	GATC	4 cut(s)	184, 268, 793, 801
Lsp1109I	GCAGC	3 cut(s)	35, 92, 336
LweI	GCATC	3 cut(s)	434, 476, 608
MaeI	CTAG	1 cut(s)	161
MalI	GATC	4 cut(s)	186, 270, 795, 803
MbiI	CCGCTC	1 cut(s)	31
MboI	GATC	4 cut(s)	184, 268, 793, 801
MboII	GAAGA	4 cut(s)	84, 144, 290, 365
MfeI	CAATTG	1 cut(s)	346
MluCI	AATT	2 cut(s)	346, 363
MlyI	GAGTC	1 cut(s)	762
MnlI	CCTC	8 cut(s)	203, 233, 236, 439, 481, 526, 568, 613
MspA1I	CMGCKG	2 cut(s)	26, 759
MspI	CCGG	1 cut(s)	641
MunI	CAATTG	1 cut(s)	346
MwoI	GCNNNNNNNGC	4 cut(s)	114, 330, 464, 683
NdeII	GATC	4 cut(s)	184, 268, 793, 801
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	100
PflMI	CCANNNNNTGG	1 cut(s)	736
PkrI	GCNGC	3 cut(s)	25, 107, 326
Ple19I	CGATCG	1 cut(s)	796
PleI	GAGTC	1 cut(s)	761
PpsI	GAGTC	1 cut(s)	761
PspN4I	GGNNCC	1 cut(s)	247
PstNI	CAGNNNCTG	1 cut(s)	50
PvuI	CGATCG	1 cut(s)	796
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	5 cut(s)	191, 247, 253, 712, 777
RsaNI	GTAC	5 cut(s)	190, 246, 252, 711, 776
SatI	GCNGC	3 cut(s)	24, 106, 325
Sau3AI	GATC	4 cut(s)	184, 268, 793, 801
SchI	GAGTC	1 cut(s)	762
SetI	ASST	9 cut(s)	28, 77, 195, 247, 251, 306, 329, 382, 555
SfaNI	GCATC	3 cut(s)	434, 476, 608
SfcI	CTRYAG	1 cut(s)	328
Sse9I	AATT	2 cut(s)	346, 363
SsiI	CCGC	3 cut(s)	31, 117, 757
SspMI	CTAG	1 cut(s)	161
TaaI	ACNGT	3 cut(s)	52, 62, 293
TaqI	TCGA	2 cut(s)	733, 792
TasI	AATT	2 cut(s)	346, 363
TfiI	GAWTC	1 cut(s)	100
TscAI	CASTG	1 cut(s)	697
TseI	GCWGC	3 cut(s)	23, 105, 324
TspDTI	ATGAA	1 cut(s)	55
TspRI	CASTG	1 cut(s)	697
Van91I	CCANNNNNTGG	1 cut(s)	736
XbaI	TCTAGA	1 cut(s)	160
XcmI	CCANNNNNNNNNTGG	1 cut(s)	317
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.