Rh3AG283500

NC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0003430
Physical Location & Seq
Forward (+)
33112202 .. 33141847
29646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG283500.1

Sequence Viewer

Length: 780 bp
ATGGGTGTGCTGTCAAACAAGAGCCACAGGGATCAACTCAAACCTGGTGATCATATCTATACATGGAGAAACGCCTACCTCTATGCCCATCACGGGATATATGTCGGTGAGGGAAAGGTTATCCACTTCACTCGGGCAGCTGGGCGGGAAATTGGCACAGGAACTGTGTTAGACCGTTTCATTTTCAGCTCATCTCCATCCCATTCTGCAGAGAATCCCTGCACGAGTTGCGATGATCCATCAGGGCGTGATGGCGGTGTCATGTCTTCTTGCCTAGATTGTTTTCTGTCTGGTGGTGATCTGTACCGCTTCGAATATGGTGTCAATCCAGCTTTCTTTCTTGCCAAAGCCAGAGGAGGTACCTGTACCCTTGCCTCGTCTGACCCATCTGAAGATGTCCTTCACCGTGCATTTTATCTTCTCAAGAAGAAGAATGGTTTTGGCAGCTACAGCCTTTTCAAAAACAATTGTGAAGACTTTGCAATTTATTGCAAAACAGGTTTGCTTGTGAATAGTAGCACTAGTTTGGGAAGGAGTGGGCAGGCATCCTCCGGTTTCTCTTTTGCAGGTGTTGCAAGTGGTATTGGTGTTGCAGCAGGTTCGTCAGCTCGATATTTGCCGATTATGGGTTTCGGTGCTTTCAGTGGTCTGGGTGCTGCTTTCGGTGTTGGAATTTATTCTTTCCAGCGATTAGCTTGTGATATTGGATTCCGCAGTGATGTTTCAAAAGTGCCAGTGGAGGAACTCTGGGACTATATGTATAAAAACAAGAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

259

Amino Acids

27.9

Weight (kDa)

8.71

Isoelectric Point (pI)

39.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 12 - 169 2.9e-27 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 557
Acc36I ACCTGC 2 cut(s) 557, 587
Acc65I GGTACC 1 cut(s) 359
AccB1I GGYRCC 1 cut(s) 359
AciI CCGC 4 cut(s) 145, 255, 307, 712
AclWI GGATC 2 cut(s) 39, 230
AcsI RAATTY 1 cut(s) 672
AcuI CTGAAG 1 cut(s) 411
AfaI GTAC 3 cut(s) 305, 361, 367
AfiI CCNNNNNNNGG 2 cut(s) 93, 626
AgsI TTSAA 2 cut(s) 460, 726
AhlI ACTAGT 1 cut(s) 521
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 6 cut(s) 140, 189, 332, 447, 608, 695
AluI AGCT 6 cut(s) 140, 189, 332, 447, 608, 695
AlwI GGATC 2 cut(s) 39, 230
AlwNI CAGNNNCTG 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 132
ApeKI GCWGC 4 cut(s) 137, 444, 593, 656
ApoI RAATTY 1 cut(s) 672
ArsI GACNNNNNNTTYG 2 cut(s) 306, 338
Asp700I GAANNNNTTC 1 cut(s) 676
Asp718I GGTACC 1 cut(s) 359
AsuHPI GGTGA 4 cut(s) 59, 119, 308, 395
AsuII TTCGAA 1 cut(s) 312
AvaI CYCGRG 1 cut(s) 132
BanI GGYRCC 1 cut(s) 359
BauI CACGAG 1 cut(s) 223
BbsI GAAGAC 2 cut(s) 258, 480
BbvI GCAGC 4 cut(s) 149, 456, 605, 643
BccI CCATC 5 cut(s) 96, 205, 245, 247, 394
BcgI CGANNNNNNTGC 2 cut(s) 582, 616
BciT130I CCWGG 1 cut(s) 45
BclI TGATCA 1 cut(s) 49
BcuI ACTAGT 1 cut(s) 521
BfaI CTAG 2 cut(s) 275, 522
BfmI CTRYAG 2 cut(s) 207, 448
BfuAI ACCTGC 2 cut(s) 557, 587
BisI GCNGC 4 cut(s) 138, 445, 594, 657
BlsI GCNGC 4 cut(s) 139, 446, 595, 658
Bme1390I CCNGG 1 cut(s) 45
BmeT110I CYCGRG 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 1 cut(s) 554
BpiI GAAGAC 2 cut(s) 258, 480
Bpu14I TTCGAA 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 407
BsaWI WCCGGW 1 cut(s) 551
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 626
Bse1I ACTGG 1 cut(s) 734
BseBI CCWGG 1 cut(s) 45
BseGI GGATG 2 cut(s) 197, 545
BseLI CCNNNNNNNGG 2 cut(s) 93, 626
BseNI ACTGG 1 cut(s) 734
BseRI GAGGAG 1 cut(s) 369
BseXI GCAGC 4 cut(s) 149, 456, 605, 643
BseYI CCCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 205
BshNI GGYRCC 1 cut(s) 359
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 1 cut(s) 552
BslFI GGGAC 1 cut(s) 764
BslI CCNNNNNNNGG 2 cut(s) 93, 626
BsmFI GGGAC 1 cut(s) 764
BsoBI CYCGRG 1 cut(s) 132
Bsp119I TTCGAA 1 cut(s) 312
Bsp143I GATC 4 cut(s) 31, 49, 235, 298
BspACI CCGC 4 cut(s) 145, 255, 307, 712
BspLI GGNNCC 1 cut(s) 361
BspMAI CTGCAG 1 cut(s) 211
BspMI ACCTGC 2 cut(s) 557, 587
BspPI GGATC 2 cut(s) 39, 230
BspT104I TTCGAA 1 cut(s) 312
BspT107I GGYRCC 1 cut(s) 359
BsrI ACTGG 1 cut(s) 734
BssMI GATC 4 cut(s) 31, 49, 235, 298
BssSI CACGAG 1 cut(s) 223
Bst2BI CACGAG 1 cut(s) 223
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 3 cut(s) 166, 176, 407
BstAPI GCANNNNNTGC 2 cut(s) 228, 572
BstBI TTCGAA 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 543
BstF5I GGATG 2 cut(s) 197, 545
BstKTI GATC 4 cut(s) 34, 52, 238, 301
BstMBI GATC 4 cut(s) 31, 49, 235, 298
BstMWI GCNNNNNNNGC 3 cut(s) 228, 450, 572
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 43
BstSFI CTRYAG 2 cut(s) 207, 448
BstV1I GCAGC 4 cut(s) 149, 456, 605, 643
BstV2I GAAGAC 2 cut(s) 258, 480
BtgZI GCGATG 1 cut(s) 246
BtsCI GGATG 2 cut(s) 197, 545
BtsI GCAGTG 1 cut(s) 721
BtsIMutI CAGTG 3 cut(s) 649, 721, 741
BveI ACCTGC 2 cut(s) 557, 587
Cac8I GCNNGC 1 cut(s) 543
CaiI CAGNNNCTG 1 cut(s) 164
CsiI ACCWGGT 1 cut(s) 43
Csp6I GTAC 3 cut(s) 304, 360, 366
CviAII CATG 2 cut(s) 63, 262
CviJI RGCY 9 cut(s) 24, 140, 189, 332, 350, 447, 453, 608, 695
CviKI_1 RGCY 9 cut(s) 24, 140, 189, 332, 350, 447, 453, 608, 695
CviQI GTAC 3 cut(s) 304, 360, 366
DpnI GATC 4 cut(s) 33, 51, 237, 300
DpnII GATC 4 cut(s) 31, 49, 235, 298
Eco57I CTGAAG 1 cut(s) 411
Eco88I CYCGRG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 43
FaeI CATG 2 cut(s) 66, 265
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FaqI GGGAC 1 cut(s) 764
FatI CATG 2 cut(s) 62, 261
FauI CCCGC 1 cut(s) 138
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 4 cut(s) 138, 445, 594, 657
FokI GGATG 2 cut(s) 184, 532
Fsp4HI GCNGC 4 cut(s) 138, 445, 594, 657
FspBI CTAG 2 cut(s) 275, 522
GluI GCNGC 4 cut(s) 138, 445, 594, 657
GsaI CCCAGC 1 cut(s) 144
HapII CCGG 1 cut(s) 552
Hin1II CATG 2 cut(s) 66, 265
HinfI GANTC 2 cut(s) 214, 708
HpaII CCGG 1 cut(s) 552
HphI GGTGA 4 cut(s) 59, 119, 308, 395
Hpy188I TCNGA 2 cut(s) 382, 391
Hpy188III TCNNGA 1 cut(s) 424
HpyAV CCTTC 2 cut(s) 410, 525
HpyCH4III ACNGT 3 cut(s) 166, 176, 407
HpyCH4V TGCA 8 cut(s) 209, 222, 410, 482, 492, 566, 575, 593
HpyF10VI GCNNNNNNNGC 3 cut(s) 228, 450, 572
Hsp92II CATG 2 cut(s) 66, 265
KpnI GGTACC 1 cut(s) 363
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 4 cut(s) 31, 49, 235, 298
Lsp1109I GCAGC 4 cut(s) 149, 456, 605, 643
LweI GCATC 1 cut(s) 554
MabI ACCWGGT 1 cut(s) 43
MaeI CTAG 2 cut(s) 275, 522
MalI GATC 4 cut(s) 33, 51, 237, 300
MboI GATC 4 cut(s) 31, 49, 235, 298
MboII GAAGA 6 cut(s) 258, 404, 410, 439, 442, 485
MfeI CAATTG 1 cut(s) 466
MluCI AATT 4 cut(s) 150, 466, 483, 672
MmeI TCCRAC 1 cut(s) 649
MnlI CCTC 7 cut(s) 89, 103, 347, 350, 385, 559, 733
MroXI GAANNNNTTC 1 cut(s) 676
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 1 cut(s) 552
MspR9I CCNGG 1 cut(s) 45
MunI CAATTG 1 cut(s) 466
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 3 cut(s) 228, 450, 572
NdeII GATC 4 cut(s) 31, 49, 235, 298
NlaIII CATG 2 cut(s) 66, 265
NlaIV GGNNCC 1 cut(s) 361
NspV TTCGAA 1 cut(s) 312
PaqCI CACCTGC 1 cut(s) 557
PdmI GAANNNNTTC 1 cut(s) 676
PfeI GAWTC 2 cut(s) 214, 708
PkrI GCNGC 4 cut(s) 139, 446, 595, 658
Psp6I CCWGG 1 cut(s) 43
PspFI CCCAGC 1 cut(s) 140
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 361
PstI CTGCAG 1 cut(s) 211
PstNI CAGNNNCTG 1 cut(s) 164
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 3 cut(s) 305, 361, 367
RsaNI GTAC 3 cut(s) 304, 360, 366
SatI GCNGC 4 cut(s) 138, 445, 594, 657
Sau3AI GATC 4 cut(s) 31, 49, 235, 298
ScrFI CCNGG 1 cut(s) 45
SexAI ACCWGGT 1 cut(s) 43
SfaNI GCATC 1 cut(s) 554
SfcI CTRYAG 2 cut(s) 207, 448
SfuI TTCGAA 1 cut(s) 312
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
SpeI ACTAGT 1 cut(s) 521
Sse9I AATT 4 cut(s) 150, 466, 483, 672
SsiI CCGC 4 cut(s) 145, 255, 307, 712
SspMI CTAG 2 cut(s) 275, 522
StyD4I CCNGG 1 cut(s) 43
TaaI ACNGT 3 cut(s) 166, 176, 407
TaqI TCGA 2 cut(s) 312, 610
TasI AATT 4 cut(s) 150, 466, 483, 672
TfiI GAWTC 2 cut(s) 214, 708
TscAI CASTG 3 cut(s) 649, 721, 741
TseI GCWGC 4 cut(s) 137, 444, 593, 656
TspDTI ATGAA 1 cut(s) 169
TspRI CASTG 3 cut(s) 649, 721, 741
XapI RAATTY 1 cut(s) 672
XmnI GAANNNNTTC 1 cut(s) 676
XspI CTAG 2 cut(s) 275, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.