Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003430

Physical Location & Seq

Genomic Coordinates Reverse (-)

21740333 .. 21741126

Gene Structure 794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0235200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGACCATTTTTCTCACAGACCACCTTTTCCCTTCCTTTGAGGTTTTTGCTGACTTTTCTCCCTTCTCTCCCATCAGACTCTTCAGAAAATTGTCGAAGAAGATCCTCCATCTTTGCTCCCTTGCTCCATCTTTGATCGCGTCCTCACAAAGATCCTCCCTTTGCTTCCGCCTCCAGCGTACAATGTCCCAACTATTAGAAGAAATTTCATCACGTTCTGGAAGCACCGATTGCAGTGCAAAAGAATCTGCACAGCTGCCTCCTCTAATCTGCACAGTTGATAAGTTTAATGTCTGGAAGAGATCAAGTGACTTAAATGATCACCTTGTGCAAGAGATAATTAAATTATACGAGGAGAAATTTAGAAATAAGTCGAAGGAGCATCAGAACCTAATCACAAGGGTTAAAGACCGAACTTTTCGCTCTTTGACAAGGATTAAAAACAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRAT

Protein Analysis

150

Amino Acids

17.45

Weight (kDa)

9.85

Isoelectric Point (pI)

64.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02700
fragaria_vesca	FvH4_1g27210 FvH4_1g27210 FvH4_1g27240 FvH4_1g27240
malus_domestica	MD09G1282900.v1.1 MD17G1272600.v1.1
prunus_persica	Prupe.3G011400_v2.0.a1
pyrus_communis	pycom09g19080 pycom17g27140
rosa_chinensis	RchiOBHm_Chr3g0487631 RchiOBHm_Chr3g0487641 RchiOBHm_Chr3g0487651
rosa_laevigata	RLG00000022986 RLG00000022987 RLG00000022991 RLG00000022994
rosa_multiflora	Rmu_sc0002995.1_g000025 Rmu_sc0012412.1_g000016 Rmu_sc0012412.1_g000021
rosa_roxburghii	Rroxscaffold_6G00394620 Rroxscaffold_6G00394630 Rroxscaffold_6G00394640
rosa_rugosa	Rorug03G0235100 Rorug03G0235200
rosa_samantha	Rh3AG283500 Rh3AG283600 Rh3BG319900 Rh3BG320000 Rh3BG320100 Rh3CG317700 Rh3DG315600 Rh3DG315800
rosa_wichuraiana	Rw3G025060 Rw3G025070 Rw3G025080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	140
AciI	CCGC	1 cut(s)	169
AclWI	GGATC	2 cut(s)	97, 147
AcsI	RAATTY	2 cut(s)	204, 359
AcuI	CTGAAG	1 cut(s)	67
AdeI	CACNNNGTG	1 cut(s)	328
AfaI	GTAC	1 cut(s)	181
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
AlwI	GGATC	2 cut(s)	97, 147
ApeKI	GCWGC	1 cut(s)	256
ApoI	RAATTY	2 cut(s)	204, 359
AsuHPI	GGTGA	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	243
BccI	CCATC	3 cut(s)	80, 117, 136
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BclI	TGATCA	1 cut(s)	319
BisI	GCNGC	1 cut(s)	257
BlsI	GCNGC	1 cut(s)	258
BmsI	GCATC	1 cut(s)	391
BpmI	CTGGAG	1 cut(s)	158
BseRI	GAGGAG	2 cut(s)	252, 368
BseXI	GCAGC	1 cut(s)	243
BsgI	GTGCAG	2 cut(s)	234, 256
Bsh1236I	CGCG	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	172
Bsp143I	GATC	5 cut(s)	102, 135, 152, 302, 319
BspACI	CCGC	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	140
BspPI	GGATC	2 cut(s)	97, 147
BssMI	GATC	5 cut(s)	102, 135, 152, 302, 319
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	2 cut(s)	86, 293
BstAPI	GCANNNNNTGC	1 cut(s)	231
BstFNI	CGCG	1 cut(s)	140
BstKTI	GATC	5 cut(s)	105, 138, 155, 305, 322
BstMBI	GATC	5 cut(s)	102, 135, 152, 302, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	243
BstX2I	RGATCY	2 cut(s)	102, 152
BstYI	RGATCY	2 cut(s)	102, 152
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	241
CseI	GACGC	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	180
CviJI	RGCY	1 cut(s)	256
CviKI_1	RGCY	1 cut(s)	256
CviQI	GTAC	1 cut(s)	180
DpnI	GATC	5 cut(s)	104, 137, 154, 304, 321
DpnII	GATC	5 cut(s)	102, 135, 152, 302, 319
DraIII	CACNNNGTG	1 cut(s)	328
Eam1104I	CTCTTC	2 cut(s)	86, 293
EarI	CTCTTC	2 cut(s)	86, 293
EciI	GGCGGA	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	67
FaiI	YATR	1 cut(s)	349
FaqI	GGGAC	1 cut(s)	172
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	257
GluI	GCNGC	1 cut(s)	257
GsuI	CTGGAG	1 cut(s)	158
HgaI	GACGC	1 cut(s)	129
HinfI	GANTC	2 cut(s)	78, 245
HphI	GGTGA	1 cut(s)	314
Hpy188I	TCNGA	3 cut(s)	77, 86, 387
Hpy188III	TCNNGA	2 cut(s)	219, 295
HpyAV	CCTTC	3 cut(s)	42, 73, 370
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	5 cut(s)	234, 239, 251, 273, 331
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	214
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	5 cut(s)	102, 135, 152, 302, 319
LmnI	GCTCC	3 cut(s)	122, 130, 379
LpnPI	CCDG	3 cut(s)	188, 204, 280
Lsp1109I	GCAGC	1 cut(s)	243
LweI	GCATC	1 cut(s)	391
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	5 cut(s)	104, 137, 154, 304, 321
MboI	GATC	5 cut(s)	102, 135, 152, 302, 319
MboII	GAAGA	5 cut(s)	73, 109, 112, 212, 310
MflI	RGATCY	2 cut(s)	102, 152
MluCI	AATT	5 cut(s)	89, 204, 339, 344, 359
MlyI	GAGTC	1 cut(s)	72
MnlI	CCTC	8 cut(s)	34, 116, 154, 166, 182, 270, 273, 346
MseI	TTAA	5 cut(s)	288, 314, 342, 405, 438
MspA1I	CMGCKG	1 cut(s)	256
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	231
NdeII	GATC	5 cut(s)	102, 135, 152, 302, 319
NmuCI	GTSAC	1 cut(s)	308
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	1 cut(s)	258
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
PsuI	RGATCY	2 cut(s)	102, 152
PvuII	CAGCTG	1 cut(s)	256
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
SaqAI	TTAA	5 cut(s)	288, 314, 342, 405, 438
SatI	GCNGC	1 cut(s)	257
Sau3AI	GATC	5 cut(s)	102, 135, 152, 302, 319
SchI	GAGTC	1 cut(s)	72
SetI	ASST	6 cut(s)	27, 45, 217, 258, 327, 393
SfaNI	GCATC	1 cut(s)	391
Sse9I	AATT	5 cut(s)	89, 204, 339, 344, 359
SsiI	CCGC	1 cut(s)	169
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	1 cut(s)	217
TaqI	TCGA	2 cut(s)	95, 374
TaqII	GACCGA	1 cut(s)	426
TasI	AATT	5 cut(s)	89, 204, 339, 344, 359
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	5 cut(s)	288, 314, 342, 405, 438
Tru9I	TTAA	5 cut(s)	288, 314, 342, 405, 438
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	1 cut(s)	256
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	1 cut(s)	198
TspRI	CASTG	1 cut(s)	241
XapI	RAATTY	2 cut(s)	204, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.