Rh3BG319900

NC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0003430
Physical Location & Seq
Forward (+)
32877600 .. 32878578
979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG319900.1

Sequence Viewer

Length: 807 bp
ATGGTTATCCACTTCACTCGGGCAGCTGAGCGGGAAATTGGCACAGGAACTGTGTTAGACCGTTTCATTTTCAGCTCATCTCCATCCCATTCTTCGGAGAATCGCTGCACGACTTGCGGTTGTCCATCAGGGCGTGATGATGGTGTCATGTCTTCTTGCCTAGATTGTTTTCTGTCTGGTGGTGATCTGTACCTCTTTGAATATGGTGTCAGTCCAGCCTTCTTTATTGCCAAAGCCAGAGGAGGTACCTGTACCCTTGCCTTGTCTGATCCATCTGAAGATGTCCTTCACCGTGCATTTTACCTTCTCCAGAATGGTTTTGGCAGCTACAGCCTTTCCAAAAACAATTGTGAAGACTTTGCAATTTATTGCAAAACAGGTTTGCTTGTGAATAGTAGCAATGGTTTGGGAAGGAGTGAGCAGGCATCCTCCATTTTATCTGTTGCAAATGCAAGTGCAAGGCAGGCATCCTCCATTTTATCTGTTGCAAATGCAAGTGCAAGTGGGCAGGCTTCCTCCATTTTATCTGTTGCAAATGCAAGTGCAAGGCAGGTATCCTCCATTTTATCTGTTGCAAATGCAAGTGCAAGTGGGCAGGCATCCTCCATTTTATCTGTTGCAAGTGCTATTGGTTGTTCACCGGCTCGATATTTGAGTGGTCTGAGTGCTTTCGGTGCTTTCAGTGGTCTGAGTGTTTTCGGTGCTGGAATTTATTCTCTCCATCGATTGGCTTATGACATTGGAGTCCGCCGTGATGTTTCAAAAGTGCCAGTAGAGAAACTCGATCGGTTGATCGGGTTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

268

Amino Acids

27.76

Weight (kDa)

7.54

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 2 - 129 6.2e-15 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 743
Acc36I ACCTGC 1 cut(s) 541
Acc65I GGTACC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 245
AccB7I CCANNNNNTGG 1 cut(s) 727
AccBSI CCGCTC 1 cut(s) 31
AciI CCGC 3 cut(s) 31, 117, 748
AclWI GGATC 1 cut(s) 263
AcsI RAATTY 1 cut(s) 708
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 3 cut(s) 191, 247, 253
AfiI CCNNNNNNNGG 2 cut(s) 94, 727
AgsI TTSAA 2 cut(s) 200, 762
AluBI AGCT 3 cut(s) 26, 75, 327
AluI AGCT 3 cut(s) 26, 75, 327
AlwI GGATC 1 cut(s) 263
AlwNI CAGNNNCTG 1 cut(s) 50
Ama87I CYCGRG 1 cut(s) 18
ApeKI GCWGC 3 cut(s) 23, 105, 324
ApoI RAATTY 1 cut(s) 708
Asp700I GAANNNNTTC 1 cut(s) 712
Asp718I GGTACC 1 cut(s) 245
AsuHPI GGTGA 3 cut(s) 194, 281, 630
AvaI CYCGRG 1 cut(s) 18
BanI GGYRCC 1 cut(s) 245
BbsI GAAGAC 2 cut(s) 144, 360
BbvI GCAGC 3 cut(s) 35, 92, 336
BccI CCATC 5 cut(s) 91, 133, 134, 280, 729
BceAI ACGGC 1 cut(s) 735
BciVI GTATCC 1 cut(s) 565
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 328
BfuAI ACCTGC 1 cut(s) 541
BfuI GTATCC 1 cut(s) 565
BisI GCNGC 3 cut(s) 24, 106, 325
BlpI GCTNAGC 1 cut(s) 27
BlsI GCNGC 3 cut(s) 25, 107, 326
BmeT110I CYCGRG 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 247
BmsI GCATC 3 cut(s) 434, 476, 608
BpiI GAAGAC 2 cut(s) 144, 360
BpmI CTGGAG 1 cut(s) 293
Bpu1102I GCTNAGC 1 cut(s) 27
Bsa29I ATCGAT 1 cut(s) 724
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 727
Bse118I RCCGGY 1 cut(s) 640
Bse1I ACTGG 1 cut(s) 770
Bse3DI GCAATG 1 cut(s) 406
BseCI ATCGAT 1 cut(s) 724
BseGI GGATG 4 cut(s) 83, 425, 467, 599
BseLI CCNNNNNNNGG 2 cut(s) 94, 727
BseMI GCAATG 1 cut(s) 406
BseMII CTCAG 3 cut(s) 18, 653, 680
BseNI ACTGG 1 cut(s) 770
BseRI GAGGAG 1 cut(s) 255
BseXI GCAGC 3 cut(s) 35, 92, 336
BsgI GTGCAG 1 cut(s) 91
Bsh1285I CGRYCG 1 cut(s) 787
BshNI GGYRCC 1 cut(s) 245
BshVI ATCGAT 1 cut(s) 724
BsiEI CGRYCG 1 cut(s) 787
BsiHKCI CYCGRG 1 cut(s) 18
BsiSI CCGG 1 cut(s) 641
BslI CCNNNNNNNGG 2 cut(s) 94, 727
BsoBI CYCGRG 1 cut(s) 18
Bsp143I GATC 4 cut(s) 184, 268, 784, 792
Bsp1720I GCTNAGC 1 cut(s) 27
BspACI CCGC 3 cut(s) 31, 117, 748
BspCNI CTCAG 3 cut(s) 19, 654, 681
BspDI ATCGAT 1 cut(s) 724
BspLI GGNNCC 1 cut(s) 247
BspMI ACCTGC 1 cut(s) 541
BspPI GGATC 1 cut(s) 263
BspT107I GGYRCC 1 cut(s) 245
BsrBI CCGCTC 1 cut(s) 31
BsrDI GCAATG 1 cut(s) 406
BsrFI RCCGGY 1 cut(s) 640
BsrI ACTGG 1 cut(s) 770
BssAI RCCGGY 1 cut(s) 640
BssMI GATC 4 cut(s) 184, 268, 784, 792
Bst4CI ACNGT 3 cut(s) 52, 62, 293
BstAPI GCANNNNNTGC 1 cut(s) 114
BstC8I GCNNGC 4 cut(s) 423, 465, 510, 597
BstDEI CTNAG 4 cut(s) 27, 662, 689, 804
BstF5I GGATG 4 cut(s) 83, 425, 467, 599
BstKTI GATC 4 cut(s) 187, 271, 787, 795
BstMBI GATC 4 cut(s) 184, 268, 784, 792
BstMCI CGRYCG 1 cut(s) 787
BstMWI GCNNNNNNNGC 4 cut(s) 114, 330, 464, 674
BstSFI CTRYAG 1 cut(s) 328
BstV1I GCAGC 3 cut(s) 35, 92, 336
BstV2I GAAGAC 2 cut(s) 144, 360
Bsu15I ATCGAT 1 cut(s) 724
BsuI GTATCC 1 cut(s) 565
BsuTUI ATCGAT 1 cut(s) 724
BtsCI GGATG 4 cut(s) 83, 425, 467, 599
BtsIMutI CAGTG 1 cut(s) 688
BveI ACCTGC 1 cut(s) 541
Cac8I GCNNGC 4 cut(s) 423, 465, 510, 597
CaiI CAGNNNCTG 1 cut(s) 50
Cfr10I RCCGGY 1 cut(s) 640
ClaI ATCGAT 1 cut(s) 724
Csp6I GTAC 3 cut(s) 190, 246, 252
CviAII CATG 1 cut(s) 148
CviQI GTAC 3 cut(s) 190, 246, 252
DdeI CTNAG 4 cut(s) 27, 662, 689, 804
DpnI GATC 4 cut(s) 186, 270, 786, 794
DpnII GATC 4 cut(s) 184, 268, 784, 792
DrdI GACNNNNNNGTC 1 cut(s) 743
DseDI GACNNNNNNGTC 1 cut(s) 743
EciI GGCGGA 1 cut(s) 737
Eco57I CTGAAG 1 cut(s) 297
Eco88I CYCGRG 1 cut(s) 18
FaeI CATG 1 cut(s) 151
FaiI YATR 3 cut(s) 149, 204, 735
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FatI CATG 1 cut(s) 147
FauI CCCGC 1 cut(s) 24
Fnu4HI GCNGC 3 cut(s) 24, 106, 325
FokI GGATG 4 cut(s) 70, 412, 454, 586
Fsp4HI GCNGC 3 cut(s) 24, 106, 325
FspBI CTAG 1 cut(s) 161
GluI GCNGC 3 cut(s) 24, 106, 325
GsuI CTGGAG 1 cut(s) 293
HapII CCGG 1 cut(s) 641
Hin1II CATG 1 cut(s) 151
HinfI GANTC 2 cut(s) 100, 744
HpaII CCGG 1 cut(s) 641
HphI GGTGA 3 cut(s) 194, 281, 630
Hpy166II GTNNAC 1 cut(s) 638
Hpy188I TCNGA 5 cut(s) 97, 268, 277, 663, 690
Hpy188III TCNNGA 1 cut(s) 310
Hpy8I GTNNAC 1 cut(s) 638
HpyAV CCTTC 4 cut(s) 229, 296, 314, 405
HpyCH4III ACNGT 3 cut(s) 52, 62, 293
HpyF10VI GCNNNNNNNGC 4 cut(s) 114, 330, 464, 674
HpyF3I CTNAG 4 cut(s) 27, 662, 689, 804
Hsp92II CATG 1 cut(s) 151
KpnI GGTACC 1 cut(s) 249
Kzo9I GATC 4 cut(s) 184, 268, 784, 792
Lsp1109I GCAGC 3 cut(s) 35, 92, 336
LweI GCATC 3 cut(s) 434, 476, 608
MaeI CTAG 1 cut(s) 161
MalI GATC 4 cut(s) 186, 270, 786, 794
MbiI CCGCTC 1 cut(s) 31
MboI GATC 4 cut(s) 184, 268, 784, 792
MboII GAAGA 4 cut(s) 84, 144, 290, 365
MfeI CAATTG 1 cut(s) 346
MluCI AATT 4 cut(s) 36, 346, 363, 708
MlyI GAGTC 1 cut(s) 753
MnlI CCTC 8 cut(s) 203, 233, 236, 439, 481, 526, 568, 613
MroXI GAANNNNTTC 1 cut(s) 712
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 1 cut(s) 641
MunI CAATTG 1 cut(s) 346
MwoI GCNNNNNNNGC 4 cut(s) 114, 330, 464, 674
NdeII GATC 4 cut(s) 184, 268, 784, 792
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 712
PfeI GAWTC 1 cut(s) 100
PflMI CCANNNNNTGG 1 cut(s) 727
PkrI GCNGC 3 cut(s) 25, 107, 326
Ple19I CGATCG 1 cut(s) 787
PleI GAGTC 1 cut(s) 752
PpsI GAGTC 1 cut(s) 752
PspN4I GGNNCC 1 cut(s) 247
PstNI CAGNNNCTG 1 cut(s) 50
PvuI CGATCG 1 cut(s) 787
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 3 cut(s) 191, 247, 253
RsaNI GTAC 3 cut(s) 190, 246, 252
SatI GCNGC 3 cut(s) 24, 106, 325
Sau3AI GATC 4 cut(s) 184, 268, 784, 792
SchI GAGTC 1 cut(s) 753
SetI ASST 9 cut(s) 28, 77, 195, 247, 251, 306, 329, 382, 555
SfaNI GCATC 3 cut(s) 434, 476, 608
SfcI CTRYAG 1 cut(s) 328
Sse9I AATT 4 cut(s) 36, 346, 363, 708
SsiI CCGC 3 cut(s) 31, 117, 748
SspMI CTAG 1 cut(s) 161
TaaI ACNGT 3 cut(s) 52, 62, 293
TaqI TCGA 3 cut(s) 646, 724, 783
TasI AATT 4 cut(s) 36, 346, 363, 708
TfiI GAWTC 1 cut(s) 100
TscAI CASTG 1 cut(s) 688
TseI GCWGC 3 cut(s) 23, 105, 324
TspDTI ATGAA 1 cut(s) 55
TspRI CASTG 1 cut(s) 688
Van91I CCANNNNNTGG 1 cut(s) 727
XapI RAATTY 1 cut(s) 708
XcmI CCANNNNNNNNNTGG 1 cut(s) 317
XmnI GAANNNNTTC 1 cut(s) 712
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.