RLG00000022987

NC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0003430
Physical Location & Seq
Reverse (-)
16288773 .. 16293077
4305 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022987

Sequence Viewer

Length: 930 bp
ATGGGTGTGCTGTCAAACAAGATCCACAGGGATCAACTAAAACTTGGTGATCATATCTATACATGGAGAAACGCTTACCTCTATGCCCATCATGGTATATATATCTGTGAGGGAATGGTTATCCACTTCACTCGGGCAGCTGGGCTGGAAATTGGCACAGGAACTGTGTTAGACCGTTTCATTTTCAGCTCATCTCCATCCCATTCTTCGGAGAATCACTGCACGACTTGCGGTTATCCGTCAGGGCGTGATGATGGTGTCATGTCTTCTTGCCTAGATTGTTTTCTGTCTGGTGGTGATCTGTACCTCTTTGAATATGGCGTCAGTCCAGCCTTCTTTATTGCCAAAGCCAGAGGAGGTACCTGTACCCTTGCCTTGTCTGATCCATCTGAAGATGTCCTTCACCGTGCATTTTACCTTCTCCAGAATGGTTTTGGCAGCTACAGCCTTTCCAAAAACAATTGTGAAGACTTTGCAATTTATTGCAAAACAGGTTTGCTTGTGAATAGTAGCAATGGTTTGGGAAGGAGTGGGCAGGCATCCTCCATTTTATCTGTTGCAAATGCGAGTGCAAGGCAGGCATCCTCCATTTTATCTGTTGCAAATGCAAGTGCAAGTGGGCAGGCATCCTCCATTTTATCTGTTGCAAATGCGAGTGCAAGGCAGGCATCCTCCATTTTATCTGTTGCAAATGCAAGTGCAATTGGGCAGGCATCCTCCATTTTATCTGTTGCAAGTGCTATTGGTTGTTCACCAGCTCGCTATTTGCTTACTATGAGTGGTCTGAGTGCTTTCGGTGCTTTCAGTGGTCTGAGTGTTTTCGGTGCTGGAATTTATTCTCTCCATCGATTGGCTTATGACATTGGAGTCCGCCGTGATGTTTCAAAAGTGCCAGTAGAGAAACTCGATTGGTTGATCGGGTTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

310

Amino Acids

32.46

Weight (kDa)

7.6

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 12 - 167 6.2e-26 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 866
Acc65I GGTACC 1 cut(s) 359
AccB1I GGYRCC 1 cut(s) 359
AccB7I CCANNNNNTGG 1 cut(s) 850
AciI CCGC 2 cut(s) 231, 871
AclWI GGATC 3 cut(s) 16, 39, 377
AcsI RAATTY 1 cut(s) 831
AcuI CTGAAG 1 cut(s) 411
AcyI GRCGYC 1 cut(s) 321
AfaI GTAC 3 cut(s) 305, 361, 367
AfiI CCNNNNNNNGG 2 cut(s) 208, 850
AgsI TTSAA 2 cut(s) 314, 885
AluBI AGCT 4 cut(s) 140, 189, 441, 758
AluI AGCT 4 cut(s) 140, 189, 441, 758
AlwI GGATC 3 cut(s) 16, 39, 377
AlwNI CAGNNNCTG 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 132
ApeKI GCWGC 2 cut(s) 137, 438
ApoI RAATTY 1 cut(s) 831
Asp700I GAANNNNTTC 1 cut(s) 835
Asp718I GGTACC 1 cut(s) 359
AsuHPI GGTGA 4 cut(s) 59, 308, 395, 744
AvaI CYCGRG 1 cut(s) 132
BanI GGYRCC 1 cut(s) 359
BbsI GAAGAC 2 cut(s) 258, 474
BbvI GCAGC 2 cut(s) 149, 450
BccI CCATC 5 cut(s) 96, 205, 248, 394, 852
BceAI ACGGC 1 cut(s) 858
BclI TGATCA 1 cut(s) 49
BfaI CTAG 1 cut(s) 275
BfmI CTRYAG 1 cut(s) 442
BisI GCNGC 2 cut(s) 138, 439
BlsI GCNGC 2 cut(s) 139, 440
BmeT110I CYCGRG 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 361
BmsI GCATC 5 cut(s) 548, 590, 635, 677, 722
BpiI GAAGAC 2 cut(s) 258, 474
BpmI CTGGAG 1 cut(s) 407
Bsa29I ATCGAT 1 cut(s) 847
BsaHI GRCGYC 1 cut(s) 321
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 850
Bse1I ACTGG 1 cut(s) 893
Bse3DI GCAATG 1 cut(s) 520
BseCI ATCGAT 1 cut(s) 847
BseGI GGATG 6 cut(s) 197, 539, 581, 626, 668, 713
BseLI CCNNNNNNNGG 2 cut(s) 208, 850
BseMI GCAATG 1 cut(s) 520
BseMII CTCAG 2 cut(s) 776, 803
BseNI ACTGG 1 cut(s) 893
BseRI GAGGAG 1 cut(s) 369
BseXI GCAGC 2 cut(s) 149, 450
BseYI CCCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 205
BshNI GGYRCC 1 cut(s) 359
BshVI ATCGAT 1 cut(s) 847
BsiHKCI CYCGRG 1 cut(s) 132
BslI CCNNNNNNNGG 2 cut(s) 208, 850
BsoBI CYCGRG 1 cut(s) 132
Bsp143I GATC 6 cut(s) 21, 31, 49, 298, 382, 915
BspACI CCGC 2 cut(s) 231, 871
BspCNI CTCAG 2 cut(s) 777, 804
BspDI ATCGAT 1 cut(s) 847
BspLI GGNNCC 1 cut(s) 361
BspPI GGATC 3 cut(s) 16, 39, 377
BspT107I GGYRCC 1 cut(s) 359
BsrDI GCAATG 1 cut(s) 520
BsrI ACTGG 1 cut(s) 893
BssMI GATC 6 cut(s) 21, 31, 49, 298, 382, 915
BssNI GRCGYC 1 cut(s) 321
Bst4CI ACNGT 3 cut(s) 166, 176, 407
BstACI GRCGYC 1 cut(s) 321
BstAPI GCANNNNNTGC 1 cut(s) 228
BstC8I GCNNGC 6 cut(s) 537, 579, 624, 666, 711, 760
BstDEI CTNAG 3 cut(s) 785, 812, 927
BstF5I GGATG 6 cut(s) 197, 539, 581, 626, 668, 713
BstKTI GATC 6 cut(s) 24, 34, 52, 301, 385, 918
BstMBI GATC 6 cut(s) 21, 31, 49, 298, 382, 915
BstMWI GCNNNNNNNGC 5 cut(s) 228, 444, 578, 665, 797
BstSFI CTRYAG 1 cut(s) 442
BstV1I GCAGC 2 cut(s) 149, 450
BstV2I GAAGAC 2 cut(s) 258, 474
BstX2I RGATCY 1 cut(s) 21
BstYI RGATCY 1 cut(s) 21
Bsu15I ATCGAT 1 cut(s) 847
BsuTUI ATCGAT 1 cut(s) 847
BtsCI GGATG 6 cut(s) 197, 539, 581, 626, 668, 713
BtsI GCAGTG 1 cut(s) 217
BtsIMutI CAGTG 2 cut(s) 217, 811
Cac8I GCNNGC 6 cut(s) 537, 579, 624, 666, 711, 760
CaiI CAGNNNCTG 1 cut(s) 164
ClaI ATCGAT 1 cut(s) 847
CseI GACGC 1 cut(s) 310
Csp6I GTAC 3 cut(s) 304, 360, 366
CviAII CATG 3 cut(s) 63, 92, 262
CviQI GTAC 3 cut(s) 304, 360, 366
DdeI CTNAG 3 cut(s) 785, 812, 927
DpnI GATC 6 cut(s) 23, 33, 51, 300, 384, 917
DpnII GATC 6 cut(s) 21, 31, 49, 298, 382, 915
DrdI GACNNNNNNGTC 1 cut(s) 866
DseDI GACNNNNNNGTC 1 cut(s) 866
EciI GGCGGA 1 cut(s) 860
Eco57I CTGAAG 1 cut(s) 411
Eco88I CYCGRG 1 cut(s) 132
FaeI CATG 3 cut(s) 66, 95, 265
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FatI CATG 3 cut(s) 62, 91, 261
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 2 cut(s) 138, 439
FokI GGATG 6 cut(s) 184, 526, 568, 613, 655, 700
Fsp4HI GCNGC 2 cut(s) 138, 439
FspBI CTAG 1 cut(s) 275
GluI GCNGC 2 cut(s) 138, 439
GsaI CCCAGC 1 cut(s) 144
GsuI CTGGAG 1 cut(s) 407
HgaI GACGC 1 cut(s) 310
Hin1I GRCGYC 1 cut(s) 321
Hin1II CATG 3 cut(s) 66, 95, 265
HinfI GANTC 2 cut(s) 214, 867
HphI GGTGA 4 cut(s) 59, 308, 395, 744
Hpy166II GTNNAC 1 cut(s) 752
Hpy188I TCNGA 5 cut(s) 211, 382, 391, 786, 813
Hpy188III TCNNGA 1 cut(s) 424
Hpy8I GTNNAC 1 cut(s) 752
HpyAV CCTTC 4 cut(s) 343, 410, 428, 519
HpyCH4III ACNGT 3 cut(s) 166, 176, 407
HpyF10VI GCNNNNNNNGC 5 cut(s) 228, 444, 578, 665, 797
HpyF3I CTNAG 3 cut(s) 785, 812, 927
Hsp92I GRCGYC 1 cut(s) 321
Hsp92II CATG 3 cut(s) 66, 95, 265
KpnI GGTACC 1 cut(s) 363
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 6 cut(s) 21, 31, 49, 298, 382, 915
Lsp1109I GCAGC 2 cut(s) 149, 450
LweI GCATC 5 cut(s) 548, 590, 635, 677, 722
MaeI CTAG 1 cut(s) 275
MalI GATC 6 cut(s) 23, 33, 51, 300, 384, 917
MboI GATC 6 cut(s) 21, 31, 49, 298, 382, 915
MboII GAAGA 4 cut(s) 198, 258, 404, 479
MfeI CAATTG 2 cut(s) 460, 702
MflI RGATCY 1 cut(s) 21
MluCI AATT 5 cut(s) 150, 460, 477, 702, 831
MlyI GAGTC 1 cut(s) 876
MroXI GAANNNNTTC 1 cut(s) 835
MspA1I CMGCKG 1 cut(s) 140
MunI CAATTG 2 cut(s) 460, 702
MwoI GCNNNNNNNGC 5 cut(s) 228, 444, 578, 665, 797
NdeII GATC 6 cut(s) 21, 31, 49, 298, 382, 915
NlaIII CATG 3 cut(s) 66, 95, 265
NlaIV GGNNCC 1 cut(s) 361
PdmI GAANNNNTTC 1 cut(s) 835
PfeI GAWTC 1 cut(s) 214
PflMI CCANNNNNTGG 1 cut(s) 850
PkrI GCNGC 2 cut(s) 139, 440
PleI GAGTC 1 cut(s) 875
PpsI GAGTC 1 cut(s) 875
PspFI CCCAGC 1 cut(s) 140
PspN4I GGNNCC 1 cut(s) 361
PstNI CAGNNNCTG 1 cut(s) 164
PsuI RGATCY 1 cut(s) 21
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 3 cut(s) 305, 361, 367
RsaNI GTAC 3 cut(s) 304, 360, 366
SatI GCNGC 2 cut(s) 138, 439
Sau3AI GATC 6 cut(s) 21, 31, 49, 298, 382, 915
SchI GAGTC 1 cut(s) 876
SfaNI GCATC 5 cut(s) 548, 590, 635, 677, 722
SfcI CTRYAG 1 cut(s) 442
Sse9I AATT 5 cut(s) 150, 460, 477, 702, 831
SsiI CCGC 2 cut(s) 231, 871
SspMI CTAG 1 cut(s) 275
TaaI ACNGT 3 cut(s) 166, 176, 407
TaqI TCGA 2 cut(s) 847, 906
TasI AATT 5 cut(s) 150, 460, 477, 702, 831
TfiI GAWTC 1 cut(s) 214
TscAI CASTG 2 cut(s) 224, 811
TseI GCWGC 2 cut(s) 137, 438
TspDTI ATGAA 1 cut(s) 169
TspGWI ACGGA 1 cut(s) 228
TspRI CASTG 2 cut(s) 224, 811
Van91I CCANNNNNTGG 1 cut(s) 850
XapI RAATTY 1 cut(s) 831
XcmI CCANNNNNNNNNTGG 1 cut(s) 431
XmnI GAANNNNTTC 1 cut(s) 835
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.