Rw3G025060

NC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0003430
Physical Location & Seq
Forward (+)
32859239 .. 32860629
1391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G025060.1

Sequence Viewer

Length: 774 bp
ATGGTTATCCACTTCACTCGGGCAGCTGAGCGGGATATTGGCACAGGAACTGTGTTAGACCGTTTCATTTTCAGCTCATCTCCATCCCATTCTTCGGAGAATCGCTGCACGACTTGCGGTTATCCTTCAGGGCGTGATGATGGTGTCATGTCTTCTTGTCTAGATTGTTTTCTGTCTGGTGGTGATCTGTACCTCTTTGAATATGGTGTCAGTCCAGCCTTCTTTATTGCCAAAGCCAGAGGAGGTACCTGTACCCTTGCCTTGTCTGATCCATCTGAAGATGTCCTTCACCGTGCATTTTACCTTCTCCAGAATGGTTTTGGCAGCTACAGCGTTTCCAAAAACAATTGTGAAGACTTTGCAATTTATTGTAAAACAGGTTTGCTTGTGAATAGTAGCAATGGTTTGGCAAGGAGTGGGCAGGCATCCTCCATTTTATCTGTTGCAAATGCAAGTGCAAGTGGGCGCCTATCCTCCATTTTATCTGTTGCAAATGCAAGTGCAAGGCAGGTATCCTCCATTTTATCTGTTGCAAATGCAAGTGCAAGTGGGCAGGCATCCTCCATTTTATCTGTTGCAAGTGCTATTGGTTGTTCACCGGCTCGATATTTGCTTACTATGACTGGTATGAGTGCTTTCGGTGCTTTCAGTGGTCTGAGTGTTTTCGGTACTGGCATTTATTCTCTCCATCGATTGGCTTATGACATTGGAGTCCGCTGTGATGTTTCAAAAGTACCAGTAGAGAAACTCGATCGGTTGATCGGGTTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

257

Amino Acids

26.81

Weight (kDa)

7.53

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 2 - 129 1.2e-14 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 710
Acc36I ACCTGC 1 cut(s) 499
Acc65I GGTACC 1 cut(s) 245
AccB1I GGYRCC 2 cut(s) 245, 465
AccB7I CCANNNNNTGG 1 cut(s) 694
AccBSI CCGCTC 1 cut(s) 31
AciI CCGC 3 cut(s) 31, 117, 715
AclWI GGATC 1 cut(s) 263
AcuI CTGAAG 2 cut(s) 111, 297
AcyI GRCGYC 1 cut(s) 466
AfaI GTAC 5 cut(s) 191, 247, 253, 670, 735
AfiI CCNNNNNNNGG 2 cut(s) 94, 694
AgsI TTSAA 2 cut(s) 200, 729
AluBI AGCT 3 cut(s) 26, 75, 327
AluI AGCT 3 cut(s) 26, 75, 327
AlwI GGATC 1 cut(s) 263
AlwNI CAGNNNCTG 1 cut(s) 50
Ama87I CYCGRG 1 cut(s) 18
ApeKI GCWGC 3 cut(s) 23, 105, 324
Asp718I GGTACC 1 cut(s) 245
AspLEI GCGC 1 cut(s) 468
AsuHPI GGTGA 3 cut(s) 194, 281, 588
AvaI CYCGRG 1 cut(s) 18
BanI GGYRCC 2 cut(s) 245, 465
BbsI GAAGAC 2 cut(s) 144, 360
BbvI GCAGC 3 cut(s) 35, 92, 336
BccI CCATC 4 cut(s) 91, 134, 280, 696
BciVI GTATCC 1 cut(s) 523
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 328
BfoI RGCGCY 1 cut(s) 469
BfuAI ACCTGC 1 cut(s) 499
BfuI GTATCC 1 cut(s) 523
BisI GCNGC 3 cut(s) 24, 106, 325
BlpI GCTNAGC 1 cut(s) 27
BlsI GCNGC 3 cut(s) 25, 107, 326
BmeT110I CYCGRG 1 cut(s) 18
BmiI GGNNCC 2 cut(s) 247, 467
BmsI GCATC 2 cut(s) 434, 566
BpiI GAAGAC 2 cut(s) 144, 360
BpmI CTGGAG 1 cut(s) 293
Bpu1102I GCTNAGC 1 cut(s) 27
Bsa29I ATCGAT 1 cut(s) 691
BsaHI GRCGYC 1 cut(s) 466
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 694
Bse118I RCCGGY 1 cut(s) 598
Bse1I ACTGG 3 cut(s) 628, 676, 737
Bse3DI GCAATG 1 cut(s) 406
BseCI ATCGAT 1 cut(s) 691
BseGI GGATG 3 cut(s) 83, 425, 557
BseLI CCNNNNNNNGG 2 cut(s) 94, 694
BseMI GCAATG 1 cut(s) 406
BseMII CTCAG 2 cut(s) 18, 647
BseNI ACTGG 3 cut(s) 628, 676, 737
BseRI GAGGAG 1 cut(s) 255
BseXI GCAGC 3 cut(s) 35, 92, 336
BsgI GTGCAG 1 cut(s) 91
Bsh1285I CGRYCG 1 cut(s) 754
BshNI GGYRCC 2 cut(s) 245, 465
BshVI ATCGAT 1 cut(s) 691
BsiEI CGRYCG 1 cut(s) 754
BsiHKCI CYCGRG 1 cut(s) 18
BsiSI CCGG 1 cut(s) 599
BslI CCNNNNNNNGG 2 cut(s) 94, 694
BsoBI CYCGRG 1 cut(s) 18
Bsp143I GATC 4 cut(s) 184, 268, 751, 759
Bsp1720I GCTNAGC 1 cut(s) 27
BspACI CCGC 3 cut(s) 31, 117, 715
BspCNI CTCAG 2 cut(s) 19, 648
BspDI ATCGAT 1 cut(s) 691
BspLI GGNNCC 2 cut(s) 247, 467
BspMI ACCTGC 1 cut(s) 499
BspPI GGATC 1 cut(s) 263
BspT107I GGYRCC 2 cut(s) 245, 465
BsrBI CCGCTC 1 cut(s) 31
BsrDI GCAATG 1 cut(s) 406
BsrFI RCCGGY 1 cut(s) 598
BsrI ACTGG 3 cut(s) 628, 676, 737
BssAI RCCGGY 1 cut(s) 598
BssMI GATC 4 cut(s) 184, 268, 751, 759
BssNI GRCGYC 1 cut(s) 466
Bst4CI ACNGT 3 cut(s) 52, 62, 293
BstACI GRCGYC 1 cut(s) 466
BstAPI GCANNNNNTGC 1 cut(s) 114
BstC8I GCNNGC 2 cut(s) 423, 555
BstDEI CTNAG 3 cut(s) 27, 656, 771
BstF5I GGATG 3 cut(s) 83, 425, 557
BstH2I RGCGCY 1 cut(s) 469
BstHHI GCGC 1 cut(s) 468
BstKTI GATC 4 cut(s) 187, 271, 754, 762
BstMBI GATC 4 cut(s) 184, 268, 751, 759
BstMCI CGRYCG 1 cut(s) 754
BstMWI GCNNNNNNNGC 3 cut(s) 114, 330, 641
BstSFI CTRYAG 1 cut(s) 328
BstV1I GCAGC 3 cut(s) 35, 92, 336
BstV2I GAAGAC 2 cut(s) 144, 360
Bsu15I ATCGAT 1 cut(s) 691
BsuI GTATCC 1 cut(s) 523
BsuTUI ATCGAT 1 cut(s) 691
BtsCI GGATG 3 cut(s) 83, 425, 557
BtsIMutI CAGTG 1 cut(s) 655
BveI ACCTGC 1 cut(s) 499
Cac8I GCNNGC 2 cut(s) 423, 555
CaiI CAGNNNCTG 1 cut(s) 50
CfoI GCGC 1 cut(s) 468
Cfr10I RCCGGY 1 cut(s) 598
ClaI ATCGAT 1 cut(s) 691
Csp6I GTAC 5 cut(s) 190, 246, 252, 669, 734
CviAII CATG 1 cut(s) 148
CviJI RGCY 8 cut(s) 26, 75, 218, 236, 327, 602, 698, 770
CviKI_1 RGCY 8 cut(s) 26, 75, 218, 236, 327, 602, 698, 770
CviQI GTAC 5 cut(s) 190, 246, 252, 669, 734
DdeI CTNAG 3 cut(s) 27, 656, 771
DinI GGCGCC 1 cut(s) 467
DpnI GATC 4 cut(s) 186, 270, 753, 761
DpnII GATC 4 cut(s) 184, 268, 751, 759
DrdI GACNNNNNNGTC 1 cut(s) 710
DseDI GACNNNNNNGTC 1 cut(s) 710
Eco57I CTGAAG 2 cut(s) 111, 297
Eco88I CYCGRG 1 cut(s) 18
EgeI GGCGCC 1 cut(s) 467
EheI GGCGCC 1 cut(s) 467
FaeI CATG 1 cut(s) 151
FaiI YATR 5 cut(s) 149, 204, 620, 629, 702
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FatI CATG 1 cut(s) 147
FauI CCCGC 1 cut(s) 24
Fnu4HI GCNGC 3 cut(s) 24, 106, 325
FokI GGATG 3 cut(s) 70, 412, 544
Fsp4HI GCNGC 3 cut(s) 24, 106, 325
FspBI CTAG 1 cut(s) 161
GlaI GCGC 1 cut(s) 467
GluI GCNGC 3 cut(s) 24, 106, 325
GsuI CTGGAG 1 cut(s) 293
HaeII RGCGCY 1 cut(s) 469
HapII CCGG 1 cut(s) 599
HhaI GCGC 1 cut(s) 468
Hin1I GRCGYC 1 cut(s) 466
Hin1II CATG 1 cut(s) 151
Hin6I GCGC 1 cut(s) 466
HinP1I GCGC 1 cut(s) 466
HinfI GANTC 2 cut(s) 100, 711
HpaII CCGG 1 cut(s) 599
HphI GGTGA 3 cut(s) 194, 281, 588
Hpy166II GTNNAC 1 cut(s) 596
Hpy188I TCNGA 4 cut(s) 97, 268, 277, 657
Hpy188III TCNNGA 2 cut(s) 161, 310
Hpy8I GTNNAC 1 cut(s) 596
HpyAV CCTTC 4 cut(s) 135, 229, 296, 314
HpyCH4III ACNGT 3 cut(s) 52, 62, 293
HpyF10VI GCNNNNNNNGC 3 cut(s) 114, 330, 641
HpyF3I CTNAG 3 cut(s) 27, 656, 771
Hsp92I GRCGYC 1 cut(s) 466
Hsp92II CATG 1 cut(s) 151
HspAI GCGC 1 cut(s) 466
KasI GGCGCC 1 cut(s) 465
KpnI GGTACC 1 cut(s) 249
Kzo9I GATC 4 cut(s) 184, 268, 751, 759
Lsp1109I GCAGC 3 cut(s) 35, 92, 336
LweI GCATC 2 cut(s) 434, 566
MaeI CTAG 1 cut(s) 161
MalI GATC 4 cut(s) 186, 270, 753, 761
MbiI CCGCTC 1 cut(s) 31
MboI GATC 4 cut(s) 184, 268, 751, 759
MboII GAAGA 4 cut(s) 84, 144, 290, 365
MfeI CAATTG 1 cut(s) 346
MluCI AATT 2 cut(s) 346, 363
Mly113I GGCGCC 1 cut(s) 466
MlyI GAGTC 1 cut(s) 720
MnlI CCTC 7 cut(s) 203, 233, 236, 439, 484, 526, 571
MspA1I CMGCKG 2 cut(s) 26, 717
MspI CCGG 1 cut(s) 599
MunI CAATTG 1 cut(s) 346
MwoI GCNNNNNNNGC 3 cut(s) 114, 330, 641
NarI GGCGCC 1 cut(s) 466
NdeII GATC 4 cut(s) 184, 268, 751, 759
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 2 cut(s) 247, 467
PfeI GAWTC 1 cut(s) 100
PflMI CCANNNNNTGG 1 cut(s) 694
PkrI GCNGC 3 cut(s) 25, 107, 326
Ple19I CGATCG 1 cut(s) 754
PleI GAGTC 1 cut(s) 719
PluTI GGCGCC 1 cut(s) 469
PpsI GAGTC 1 cut(s) 719
PspN4I GGNNCC 2 cut(s) 247, 467
PstNI CAGNNNCTG 1 cut(s) 50
PvuI CGATCG 1 cut(s) 754
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 5 cut(s) 191, 247, 253, 670, 735
RsaNI GTAC 5 cut(s) 190, 246, 252, 669, 734
SatI GCNGC 3 cut(s) 24, 106, 325
Sau3AI GATC 4 cut(s) 184, 268, 751, 759
SchI GAGTC 1 cut(s) 720
SetI ASST 9 cut(s) 28, 77, 195, 247, 251, 306, 329, 382, 513
SfaNI GCATC 2 cut(s) 434, 566
SfcI CTRYAG 1 cut(s) 328
SfoI GGCGCC 1 cut(s) 467
Sse9I AATT 2 cut(s) 346, 363
SsiI CCGC 3 cut(s) 31, 117, 715
SspDI GGCGCC 1 cut(s) 465
SspMI CTAG 1 cut(s) 161
TaaI ACNGT 3 cut(s) 52, 62, 293
TaqI TCGA 3 cut(s) 604, 691, 750
TasI AATT 2 cut(s) 346, 363
TfiI GAWTC 1 cut(s) 100
TscAI CASTG 1 cut(s) 655
TseI GCWGC 3 cut(s) 23, 105, 324
TspDTI ATGAA 1 cut(s) 55
TspRI CASTG 1 cut(s) 655
Van91I CCANNNNNTGG 1 cut(s) 694
XbaI TCTAGA 1 cut(s) 160
XcmI CCANNNNNNNNNTGG 1 cut(s) 317
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.