RchiOBHm_Chr3g0487631

NC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0003430
Physical Location & Seq
Forward (+)
34848056 .. 34852771
4716 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45206

Sequence Viewer

Length: 933 bp
ATGGGTGTGCTGTCAAACAAGAGCCACAGGGATCAACTCAAACCTGGTGATCATATCTATACATGGAGAAACGCCTACCTCTATGCCCATCACGGTATATATATCTGTGAGGGAATGGTTATCCACTTCACTCGGGCAGCTGAGCGGGATATTGGCACAGGAACTGTGTTAGACCGTTTCATTTTCAGCTCATCTCCATCCCATTCTTCGGAGAATCGCTGCACGACTTGCGGTTATCCTTCAGGGCGTGATGATGGTGTCATGTCTTCTTGTCTAGATTGTTTTCTGTCTGGTGGTGATCTGTACCTCTTTGAATATGGTGTCAGTCCAGCCTTCTTTATTGCCAAAGCCAGAGGAGGTACCTGTACCCTTGCCTTGTCTGATCCATCTGAAGATGTCCTTCACCGTGCATTTTACCTTCTCCAGAATGGTTTTGGCAGCTACAGCGTTTCCAAAAACAATTGTGAAGACTTTGCAATTTATTGCAAAACAGGTTTGCTTGTGAATAGTAGCAATGGTTTGGGAAGGAGTGGGCAGGCATCCTCCATTTTATCTGTTGCAAATGCAAGTGCAAGTGGGCGCTTATCCTCCATTTTATCTGTTGCAAATGCAAGTGCAAGTGGGCGCTTATCCTCCATTTTATCTGTTGCAAATGCAAGTGCAAGGCAGGTATCCTCCATTTTATCTGTTGCAAATGCAAGTGCAAGTGGGCAGGCATCCTCCATTTTATCTGTTGCAAGTGCTATTGGTTGTTCACCGGCTCGATATTTGCTTACTATGAGTGGTATGAGTGCTTTCGGTGCTTTCAGTGGTCTGAGTGTTTTCGGTACTGGCATTTATTCTCTCCACCGATTGGCTTATGACATTGGAGTCCGCTGTGATGTTTCAAAAGTACCAGTAGAGAAACTCGATCGGTTGATCGGGTTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

310

Amino Acids

32.62

Weight (kDa)

8.31

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 12 - 167 6.2e-26 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 869
Acc36I ACCTGC 1 cut(s) 658
Acc65I GGTACC 1 cut(s) 359
AccB1I GGYRCC 1 cut(s) 359
AccB7I CCANNNNNTGG 1 cut(s) 853
AccBSI CCGCTC 1 cut(s) 145
AciI CCGC 3 cut(s) 145, 231, 874
AclWI GGATC 2 cut(s) 39, 377
AcuI CTGAAG 2 cut(s) 225, 411
AfaI GTAC 5 cut(s) 305, 361, 367, 829, 894
AfiI CCNNNNNNNGG 2 cut(s) 208, 853
AgsI TTSAA 2 cut(s) 314, 888
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 3 cut(s) 140, 189, 441
AluI AGCT 3 cut(s) 140, 189, 441
AlwI GGATC 2 cut(s) 39, 377
AlwNI CAGNNNCTG 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 132
ApeKI GCWGC 3 cut(s) 137, 219, 438
Asp718I GGTACC 1 cut(s) 359
AspLEI GCGC 2 cut(s) 582, 627
AsuHPI GGTGA 4 cut(s) 59, 308, 395, 747
AvaI CYCGRG 1 cut(s) 132
BanI GGYRCC 1 cut(s) 359
BbsI GAAGAC 2 cut(s) 258, 474
BbvI GCAGC 3 cut(s) 149, 206, 450
BccI CCATC 4 cut(s) 96, 205, 248, 394
BciT130I CCWGG 1 cut(s) 45
BciVI GTATCC 1 cut(s) 682
BclI TGATCA 1 cut(s) 49
BfaI CTAG 1 cut(s) 275
BfmI CTRYAG 1 cut(s) 442
BfoI RGCGCY 2 cut(s) 583, 628
BfuAI ACCTGC 1 cut(s) 658
BfuI GTATCC 1 cut(s) 682
BisI GCNGC 3 cut(s) 138, 220, 439
BlpI GCTNAGC 1 cut(s) 141
BlsI GCNGC 3 cut(s) 139, 221, 440
Bme1390I CCNGG 1 cut(s) 45
BmeT110I CYCGRG 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 2 cut(s) 548, 725
BpiI GAAGAC 2 cut(s) 258, 474
BpmI CTGGAG 1 cut(s) 407
Bpu1102I GCTNAGC 1 cut(s) 141
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 853
Bse118I RCCGGY 1 cut(s) 757
Bse1I ACTGG 2 cut(s) 835, 896
Bse3DI GCAATG 1 cut(s) 520
BseBI CCWGG 1 cut(s) 45
BseGI GGATG 3 cut(s) 197, 539, 716
BseLI CCNNNNNNNGG 2 cut(s) 208, 853
BseMI GCAATG 1 cut(s) 520
BseMII CTCAG 2 cut(s) 132, 806
BseNI ACTGG 2 cut(s) 835, 896
BseRI GAGGAG 1 cut(s) 369
BseXI GCAGC 3 cut(s) 149, 206, 450
BsgI GTGCAG 1 cut(s) 205
Bsh1285I CGRYCG 1 cut(s) 913
BshNI GGYRCC 1 cut(s) 359
BsiEI CGRYCG 1 cut(s) 913
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 1 cut(s) 758
BslI CCNNNNNNNGG 2 cut(s) 208, 853
BsoBI CYCGRG 1 cut(s) 132
Bsp143I GATC 6 cut(s) 31, 49, 298, 382, 910, 918
Bsp1720I GCTNAGC 1 cut(s) 141
BspACI CCGC 3 cut(s) 145, 231, 874
BspCNI CTCAG 2 cut(s) 133, 807
BspLI GGNNCC 1 cut(s) 361
BspMI ACCTGC 1 cut(s) 658
BspPI GGATC 2 cut(s) 39, 377
BspT107I GGYRCC 1 cut(s) 359
BsrBI CCGCTC 1 cut(s) 145
BsrDI GCAATG 1 cut(s) 520
BsrFI RCCGGY 1 cut(s) 757
BsrI ACTGG 2 cut(s) 835, 896
BssAI RCCGGY 1 cut(s) 757
BssMI GATC 6 cut(s) 31, 49, 298, 382, 910, 918
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 4 cut(s) 95, 166, 176, 407
BstAPI GCANNNNNTGC 1 cut(s) 228
BstC8I GCNNGC 2 cut(s) 537, 714
BstDEI CTNAG 3 cut(s) 141, 815, 930
BstF5I GGATG 3 cut(s) 197, 539, 716
BstH2I RGCGCY 2 cut(s) 583, 628
BstHHI GCGC 2 cut(s) 582, 627
BstKTI GATC 6 cut(s) 34, 52, 301, 385, 913, 921
BstMBI GATC 6 cut(s) 31, 49, 298, 382, 910, 918
BstMCI CGRYCG 1 cut(s) 913
BstMWI GCNNNNNNNGC 3 cut(s) 228, 444, 800
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 43
BstSFI CTRYAG 1 cut(s) 442
BstV1I GCAGC 3 cut(s) 149, 206, 450
BstV2I GAAGAC 2 cut(s) 258, 474
BsuI GTATCC 1 cut(s) 682
BtsCI GGATG 3 cut(s) 197, 539, 716
BtsIMutI CAGTG 1 cut(s) 814
BveI ACCTGC 1 cut(s) 658
Cac8I GCNNGC 2 cut(s) 537, 714
CaiI CAGNNNCTG 1 cut(s) 164
CfoI GCGC 2 cut(s) 582, 627
Cfr10I RCCGGY 1 cut(s) 757
CsiI ACCWGGT 1 cut(s) 43
Csp6I GTAC 5 cut(s) 304, 360, 366, 828, 893
CviAII CATG 2 cut(s) 63, 262
CviJI RGCY 9 cut(s) 24, 140, 189, 332, 350, 441, 761, 857, 929
CviKI_1 RGCY 9 cut(s) 24, 140, 189, 332, 350, 441, 761, 857, 929
CviQI GTAC 5 cut(s) 304, 360, 366, 828, 893
DdeI CTNAG 3 cut(s) 141, 815, 930
DpnI GATC 6 cut(s) 33, 51, 300, 384, 912, 920
DpnII GATC 6 cut(s) 31, 49, 298, 382, 910, 918
DrdI GACNNNNNNGTC 1 cut(s) 869
DseDI GACNNNNNNGTC 1 cut(s) 869
Eco57I CTGAAG 2 cut(s) 225, 411
Eco88I CYCGRG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 43
FaeI CATG 2 cut(s) 66, 265
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FatI CATG 2 cut(s) 62, 261
FauI CCCGC 1 cut(s) 138
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 3 cut(s) 138, 220, 439
FokI GGATG 3 cut(s) 184, 526, 703
Fsp4HI GCNGC 3 cut(s) 138, 220, 439
FspBI CTAG 1 cut(s) 275
GlaI GCGC 2 cut(s) 581, 626
GluI GCNGC 3 cut(s) 138, 220, 439
GsuI CTGGAG 1 cut(s) 407
HaeII RGCGCY 2 cut(s) 583, 628
HapII CCGG 1 cut(s) 758
HhaI GCGC 2 cut(s) 582, 627
Hin1II CATG 2 cut(s) 66, 265
Hin6I GCGC 2 cut(s) 580, 625
HinP1I GCGC 2 cut(s) 580, 625
HinfI GANTC 2 cut(s) 214, 870
HpaII CCGG 1 cut(s) 758
HphI GGTGA 4 cut(s) 59, 308, 395, 747
Hpy166II GTNNAC 1 cut(s) 755
Hpy188I TCNGA 4 cut(s) 211, 382, 391, 816
Hpy188III TCNNGA 2 cut(s) 275, 424
Hpy8I GTNNAC 1 cut(s) 755
HpyAV CCTTC 5 cut(s) 249, 343, 410, 428, 519
HpyCH4III ACNGT 4 cut(s) 95, 166, 176, 407
HpyF10VI GCNNNNNNNGC 3 cut(s) 228, 444, 800
HpyF3I CTNAG 3 cut(s) 141, 815, 930
Hsp92II CATG 2 cut(s) 66, 265
HspAI GCGC 2 cut(s) 580, 625
KpnI GGTACC 1 cut(s) 363
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 6 cut(s) 31, 49, 298, 382, 910, 918
Lsp1109I GCAGC 3 cut(s) 149, 206, 450
LweI GCATC 2 cut(s) 548, 725
MabI ACCWGGT 1 cut(s) 43
MaeI CTAG 1 cut(s) 275
MalI GATC 6 cut(s) 33, 51, 300, 384, 912, 920
MbiI CCGCTC 1 cut(s) 145
MboI GATC 6 cut(s) 31, 49, 298, 382, 910, 918
MboII GAAGA 4 cut(s) 198, 258, 404, 479
MfeI CAATTG 1 cut(s) 460
MluCI AATT 2 cut(s) 460, 477
MlyI GAGTC 1 cut(s) 879
MspA1I CMGCKG 2 cut(s) 140, 876
MspI CCGG 1 cut(s) 758
MspR9I CCNGG 1 cut(s) 45
MunI CAATTG 1 cut(s) 460
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 3 cut(s) 228, 444, 800
NdeII GATC 6 cut(s) 31, 49, 298, 382, 910, 918
NlaIII CATG 2 cut(s) 66, 265
NlaIV GGNNCC 1 cut(s) 361
PfeI GAWTC 1 cut(s) 214
PflMI CCANNNNNTGG 1 cut(s) 853
PkrI GCNGC 3 cut(s) 139, 221, 440
Ple19I CGATCG 1 cut(s) 913
PleI GAGTC 1 cut(s) 878
PpsI GAGTC 1 cut(s) 878
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 361
PstNI CAGNNNCTG 1 cut(s) 164
PvuI CGATCG 1 cut(s) 913
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 5 cut(s) 305, 361, 367, 829, 894
RsaNI GTAC 5 cut(s) 304, 360, 366, 828, 893
SatI GCNGC 3 cut(s) 138, 220, 439
Sau3AI GATC 6 cut(s) 31, 49, 298, 382, 910, 918
SchI GAGTC 1 cut(s) 879
ScrFI CCNGG 1 cut(s) 45
SexAI ACCWGGT 1 cut(s) 43
SfaNI GCATC 2 cut(s) 548, 725
SfcI CTRYAG 1 cut(s) 442
Sse9I AATT 2 cut(s) 460, 477
SsiI CCGC 3 cut(s) 145, 231, 874
SspMI CTAG 1 cut(s) 275
StyD4I CCNGG 1 cut(s) 43
TaaI ACNGT 4 cut(s) 95, 166, 176, 407
TaqI TCGA 2 cut(s) 763, 909
TasI AATT 2 cut(s) 460, 477
TfiI GAWTC 1 cut(s) 214
TscAI CASTG 1 cut(s) 814
TseI GCWGC 3 cut(s) 137, 219, 438
TspDTI ATGAA 1 cut(s) 169
TspRI CASTG 1 cut(s) 814
Van91I CCANNNNNTGG 1 cut(s) 853
XbaI TCTAGA 1 cut(s) 274
XcmI CCANNNNNNNNNTGG 1 cut(s) 431
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.