Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003430

Physical Location & Seq

Genomic Coordinates Reverse (-)

19848495 .. 19850468

Gene Structure 1974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g19080.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTTTAATTTAAATGATATAGAAAAAACAAAGGGAATTGTTAATAGGCCAATAACAGTTCCCAAAAAAAAGACTGGGGTTTTCGCCGTTTCAGTTTTCTTCTTCCGAATTGGGGATAAATTGAGTTTTCGCCATTTCGTATCCAGTTCCAGATCTTTACAGTATCGATCGATCCAGAGAGAAGGAATGGGAGTGCTGTCGAACAAGATTGAGAGGGATCTTCTGAAACCTGGAGATCACATCTATTCATGGCGCCACGCGTACCTCTATTCCCACCACGGGATATACGTTGGTGAAGGAAAGGTTATTCACTTCACTCGAGGAGCTGGCCAGGAAACTGGCACCGGAACTGTGTTAGATCGCTTCCTTCTAAGCAGCTCTCCATCCCATTCTTCGGACAATCCCTGCCCAAACTGCGGAGACCAATCGACACTTGATGGTGTCATCTCTTCTTGCATAGATTGTTTTCTATCAGGCGGTCGATCTTTACCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRAT

Protein Analysis

166

Amino Acids

18.3

Weight (kDa)

9.3

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02700
fragaria_vesca	FvH4_1g27210 FvH4_1g27210 FvH4_1g27240 FvH4_1g27240
malus_domestica	MD09G1282900.v1.1 MD17G1272600.v1.1
prunus_persica	Prupe.3G011400_v2.0.a1
pyrus_communis	pycom09g19080 pycom17g27140
rosa_chinensis	RchiOBHm_Chr3g0487631 RchiOBHm_Chr3g0487641 RchiOBHm_Chr3g0487651
rosa_laevigata	RLG00000022986 RLG00000022987 RLG00000022991 RLG00000022994
rosa_multiflora	Rmu_sc0002995.1_g000025 Rmu_sc0012412.1_g000016 Rmu_sc0012412.1_g000021
rosa_roxburghii	Rroxscaffold_6G00394620 Rroxscaffold_6G00394630 Rroxscaffold_6G00394640
rosa_rugosa	Rorug03G0235100 Rorug03G0235200
rosa_samantha	Rh3AG283500 Rh3AG283600 Rh3BG319900 Rh3BG320000 Rh3BG320100 Rh3CG317700 Rh3DG315600 Rh3DG315800
rosa_wichuraiana	Rw3G025060 Rw3G025070 Rw3G025080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	252, 341
AccII	CGCG	1 cut(s)	260
AciI	CCGC	2 cut(s)	417, 477
AclWI	GGATC	2 cut(s)	166, 225
AcoI	YGGCCR	1 cut(s)	328
AcyI	GRCGYC	1 cut(s)	253
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	4 cut(s)	112, 279, 394, 416
AflIII	ACRYGT	1 cut(s)	258
AjnI	CCWGG	2 cut(s)	229, 330
AluBI	AGCT	2 cut(s)	326, 378
AluI	AGCT	2 cut(s)	326, 378
Alw26I	GTCTC	1 cut(s)	414
AlwI	GGATC	2 cut(s)	166, 225
Ama87I	CYCGRG	1 cut(s)	318
AoxI	GGCC	2 cut(s)	47, 328
ApeKI	GCWGC	1 cut(s)	375
AspLEI	GCGC	1 cut(s)	255
AsuHPI	GGTGA	1 cut(s)	305
AvaI	CYCGRG	1 cut(s)	318
BalI	TGGCCA	1 cut(s)	330
BanI	GGYRCC	2 cut(s)	252, 341
BbvI	GCAGC	1 cut(s)	387
BccI	CCATC	2 cut(s)	391, 431
BceAI	ACGGC	1 cut(s)	71
BciT130I	CCWGG	2 cut(s)	231, 332
BciVI	GTATCC	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	414
BfoI	RGCGCY	1 cut(s)	256
BfuI	GTATCC	1 cut(s)	151
BglII	AGATCT	1 cut(s)	152
BisI	GCNGC	1 cut(s)	376
BlsI	GCNGC	1 cut(s)	377
Bme1390I	CCNGG	2 cut(s)	231, 332
BmeT110I	CYCGRG	1 cut(s)	318
BmiI	GGNNCC	2 cut(s)	254, 343
BmrFI	CCNGG	2 cut(s)	231, 332
BmrI	ACTGGG	1 cut(s)	84
BmuI	ACTGGG	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	252
Bsa29I	ATCGAT	2 cut(s)	166, 170
BsaHI	GRCGYC	1 cut(s)	253
BsaI	GGTCTC	1 cut(s)	414
BsaJI	CCNNGG	1 cut(s)	277
BsaWI	WCCGGW	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	4 cut(s)	112, 279, 394, 416
Bse1I	ACTGG	3 cut(s)	79, 144, 343
BseBI	CCWGG	2 cut(s)	231, 332
BseCI	ATCGAT	2 cut(s)	166, 170
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	1 cut(s)	383
BseLI	CCNNNNNNNGG	4 cut(s)	112, 279, 394, 416
BseNI	ACTGG	3 cut(s)	79, 144, 343
BseRI	GAGGAG	1 cut(s)	336
BseXI	GCAGC	1 cut(s)	387
Bsh1236I	CGCG	1 cut(s)	260
Bsh1285I	CGRYCG	2 cut(s)	170, 481
BshFI	GGCC	2 cut(s)	49, 330
BshNI	GGYRCC	2 cut(s)	252, 341
BshVI	ATCGAT	2 cut(s)	166, 170
BsiEI	CGRYCG	2 cut(s)	170, 481
BsiHKCI	CYCGRG	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	345
BslI	CCNNNNNNNGG	4 cut(s)	112, 279, 394, 416
BsmAI	GTCTC	1 cut(s)	414
BsnI	GGCC	2 cut(s)	49, 330
Bso31I	GGTCTC	1 cut(s)	414
BsoBI	CYCGRG	1 cut(s)	318
Bsp143I	GATC	7 cut(s)	152, 167, 171, 217, 235, 358, 482
BspACI	CCGC	2 cut(s)	417, 477
BspANI	GGCC	2 cut(s)	49, 330
BspDI	ATCGAT	2 cut(s)	166, 170
BspFNI	CGCG	1 cut(s)	260
BspLI	GGNNCC	2 cut(s)	254, 343
BspPI	GGATC	2 cut(s)	166, 225
BspT107I	GGYRCC	2 cut(s)	252, 341
BspTNI	GGTCTC	1 cut(s)	414
BsrI	ACTGG	3 cut(s)	79, 144, 343
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	7 cut(s)	152, 167, 171, 217, 235, 358, 482
BssNI	GRCGYC	1 cut(s)	253
Bst2UI	CCWGG	2 cut(s)	231, 332
Bst4CI	ACNGT	3 cut(s)	58, 162, 352
Bst6I	CTCTTC	1 cut(s)	454
BstACI	GRCGYC	1 cut(s)	253
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	1 cut(s)	371
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	1 cut(s)	383
BstFNI	CGCG	1 cut(s)	260
BstH2I	RGCGCY	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	7 cut(s)	155, 170, 174, 220, 238, 361, 485
BstMAI	GTCTC	1 cut(s)	414
BstMBI	GATC	7 cut(s)	152, 167, 171, 217, 235, 358, 482
BstMCI	CGRYCG	2 cut(s)	170, 481
BstMWI	GCNNNNNNNGC	1 cut(s)	414
BstNI	CCWGG	2 cut(s)	231, 332
BstSCI	CCNGG	2 cut(s)	229, 330
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	387
BstX2I	RGATCY	2 cut(s)	152, 217
BstXI	CCANNNNNNTGG	1 cut(s)	338
BstYI	RGATCY	2 cut(s)	152, 217
Bsu15I	ATCGAT	2 cut(s)	166, 170
BsuI	GTATCC	1 cut(s)	151
BsuRI	GGCC	2 cut(s)	49, 330
BsuTUI	ATCGAT	2 cut(s)	166, 170
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	383
Cac8I	GCNNGC	1 cut(s)	328
CfoI	GCGC	1 cut(s)	255
ClaI	ATCGAT	2 cut(s)	166, 170
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	1 cut(s)	249
CviJI	RGCY	4 cut(s)	49, 326, 330, 378
CviKI_1	RGCY	4 cut(s)	49, 326, 330, 378
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	1 cut(s)	371
DinI	GGCGCC	1 cut(s)	254
DpnI	GATC	7 cut(s)	154, 169, 173, 219, 237, 360, 484
DpnII	GATC	7 cut(s)	152, 167, 171, 217, 235, 358, 482
DraI	TTTAAA	1 cut(s)	12
EaeI	YGGCCR	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	454
EarI	CTCTTC	1 cut(s)	454
Eco31I	GGTCTC	1 cut(s)	414
Eco88I	CYCGRG	1 cut(s)	318
EcoRII	CCWGG	2 cut(s)	229, 330
EgeI	GGCGCC	1 cut(s)	254
EheI	GGCGCC	1 cut(s)	254
FaeI	CATG	1 cut(s)	252
FaiI	YATR	4 cut(s)	20, 250, 286, 458
FatI	CATG	1 cut(s)	248
Fnu4HI	GCNGC	1 cut(s)	376
FokI	GGATG	1 cut(s)	370
Fsp4HI	GCNGC	1 cut(s)	376
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	1 cut(s)	376
GsuI	CTGGAG	1 cut(s)	252
HaeII	RGCGCY	1 cut(s)	256
HaeIII	GGCC	2 cut(s)	49, 330
HapII	CCGG	1 cut(s)	345
HhaI	GCGC	1 cut(s)	255
Hin1I	GRCGYC	1 cut(s)	253
Hin1II	CATG	1 cut(s)	252
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	1 cut(s)	305
Hpy188I	TCNGA	3 cut(s)	107, 225, 397
Hpy188III	TCNNGA	2 cut(s)	150, 175
HpyAV	CCTTC	3 cut(s)	176, 290, 377
HpyCH4III	ACNGT	3 cut(s)	58, 162, 352
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	1 cut(s)	456
HpyF10VI	GCNNNNNNNGC	1 cut(s)	414
HpyF3I	CTNAG	1 cut(s)	371
HpySE526I	ACGT	1 cut(s)	288
Hsp92I	GRCGYC	1 cut(s)	253
Hsp92II	CATG	1 cut(s)	252
HspAI	GCGC	1 cut(s)	253
KasI	GGCGCC	1 cut(s)	252
Kzo9I	GATC	7 cut(s)	152, 167, 171, 217, 235, 358, 482
LmnI	GCTCC	1 cut(s)	323
Lsp1109I	GCAGC	1 cut(s)	387
MaeII	ACGT	1 cut(s)	288
MalI	GATC	7 cut(s)	154, 169, 173, 219, 237, 360, 484
MboI	GATC	7 cut(s)	152, 167, 171, 217, 235, 358, 482
MboII	GAAGA	5 cut(s)	91, 94, 212, 384, 441
MflI	RGATCY	2 cut(s)	152, 217
MlsI	TGGCCA	1 cut(s)	330
MluCI	AATT	4 cut(s)	7, 36, 108, 119
MluI	ACGCGT	1 cut(s)	258
MluNI	TGGCCA	1 cut(s)	330
Mly113I	GGCGCC	1 cut(s)	253
MnlI	CCTC	3 cut(s)	207, 275, 314
Mox20I	TGGCCA	1 cut(s)	330
MscI	TGGCCA	1 cut(s)	330
MseI	TTAA	3 cut(s)	6, 11, 42
Msp20I	TGGCCA	1 cut(s)	330
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	2 cut(s)	231, 332
MvaI	CCWGG	2 cut(s)	231, 332
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	1 cut(s)	414
NarI	GGCGCC	1 cut(s)	253
NdeII	GATC	7 cut(s)	152, 167, 171, 217, 235, 358, 482
NlaIII	CATG	1 cut(s)	252
NlaIV	GGNNCC	2 cut(s)	254, 343
PaeR7I	CTCGAG	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PkrI	GCNGC	1 cut(s)	377
Ple19I	CGATCG	1 cut(s)	170
PluTI	GGCGCC	1 cut(s)	256
Psp6I	CCWGG	2 cut(s)	229, 330
PspGI	CCWGG	2 cut(s)	229, 330
PspN4I	GGNNCC	2 cut(s)	254, 343
PspXI	VCTCGAGB	1 cut(s)	318
PsuI	RGATCY	2 cut(s)	152, 217
PvuI	CGATCG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SaqAI	TTAA	3 cut(s)	6, 11, 42
SatI	GCNGC	1 cut(s)	376
Sau3AI	GATC	7 cut(s)	152, 167, 171, 217, 235, 358, 482
ScrFI	CCNGG	2 cut(s)	231, 332
SetI	ASST	7 cut(s)	232, 267, 291, 306, 328, 380, 493
SfoI	GGCGCC	1 cut(s)	254
Sfr274I	CTCGAG	1 cut(s)	318
SlaI	CTCGAG	1 cut(s)	318
SmiI	ATTTAAAT	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	318
SmoI	CTYRAG	1 cut(s)	318
Sse9I	AATT	4 cut(s)	7, 36, 108, 119
SsiI	CCGC	2 cut(s)	417, 477
SspDI	GGCGCC	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	229, 330
SwaI	ATTTAAAT	1 cut(s)	12
TaaI	ACNGT	3 cut(s)	58, 162, 352
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	6 cut(s)	166, 170, 200, 319, 428, 481
TasI	AATT	4 cut(s)	7, 36, 108, 119
Tru1I	TTAA	3 cut(s)	6, 11, 42
Tru9I	TTAA	3 cut(s)	6, 11, 42
TseI	GCWGC	1 cut(s)	375
TspDTI	ATGAA	1 cut(s)	237
XhoI	CTCGAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.