Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001898

Physical Location & Seq

Genomic Coordinates Reverse (-)

867548 .. 868706

Gene Structure 1159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G03600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGACGATTCACGCTGCAGTAATCCAGAAGCTTCTGAACACCGGAGCACATCTCGGCCGTCGTGCCGCCGAGCACCATTTCAAGCAATACGCTTACGGGACGCGTAACGGAATGACAATTATCGACTCCGACAAAACCCTAATTTGCCTCCGTAGCGCCGCTCATTTCGTCGCTAACCTCGCCCACATGAGAGGTAACATCTTCTTCGTCAACACGAATCCTCTCTTCGACGAAATCATTGAGCTCACTTCTCGTCGGATCCAAGGAGATTCGTATAATCACAACCGTGCGATGAATCTGTGGAAGATGGGAGGGTTTTTGACTAACAGCTACAGTCCTAAGAAGTTTCGATCTAGGCATAAAAAGCTTTGCTTTGGTCCAACTACTATGCCTGATTGTGTCGTTGTGTTTGATTCTGAGAGGAAGAGCTCTGTGATACTTGAGGCATCGAAGCTTCAGATTCCGGTTGTTGCAATTGTGGACCCGAATGTGCCATTGGAGTTCTTTGAGAAGATTACGTATCCTGTGCCAGCTCGTGATTCGGTCAAGTTTGTGTATTTGTTCTGTAATGTGATCACCAAGTGCTTTGTGGCAGAACAGATGAAGTTGGGGATCAAAGAAGGGAGCAATGAAGATTTGATGAAGGATTTAGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S2

Protein Analysis

219

Amino Acids

24.77

Weight (kDa)

9.3

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S2	PF00318	11 - 115	3.8e-16	Ribosomal protein S2
Ribosomal_S2	PF00318	128 - 195	3.1e-11	Ribosomal protein S2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03600
fragaria_vesca	FvH4_7g08140
malus_domestica	MD02G1230600.v1.1
prunus_persica	Prupe.2G107500_v2.0.a1
pyrus_communis	pycom02g19970 pycom07g06540
rosa_chinensis	RchiOBHm_Chr1g0341081 RchiOBHm_Chr1g0363821 RchiOBHm_Chr1g0383121 RchiOBHm_Chr2g0085551 RchiOBHm_Chr3g0481141 RchiOBHm_Chr5g0027611 RchiOBHm_Chr5g0054321 RchiOBHm_Chr6g0246101
rosa_laevigata	RLG00000003952 RLG00000006546 RLG00000013359 RLG00000020654 RLG00000029063
rosa_multiflora	Rmu_sc0000533.1_g000047 Rmu_sc0000821.1_g000002 Rmu_sc0001211.1_g000068 Rmu_sc0002200.1_g000002 Rmu_sc0004332.1_g000001 Rmu_sc0004577.1_g000014 Rmu_sc0008563.1_g000010 Rmu_sc0012351.1_g000004 Rmu_ssc0000190.1_g000008
rosa_roxburghii	Rroxscaffold_1G00011600 Rroxscaffold_4G00311710
rosa_rugosa	Rorug01G0160000.1 Rorug05G0092000
rosa_samantha	Rh1AG174300 Rh1BG142600 Rh1BG221400 Rh1CG162100 Rh1CG365900 Rh1DG174200 Rh1DG248400 Rh1DG383600 Rh3AG240800 Rh5AG444100 Rh5DG194400
rosa_wichuraiana	Rw1G014550 Rw4G015450 Rw5G024540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	161
AccII	CGCG	1 cut(s)	103
AciI	CCGC	2 cut(s)	66, 159
AclWI	GGATC	3 cut(s)	253, 266, 620
AcoI	YGGCCR	1 cut(s)	55
AcuI	CTGAAG	1 cut(s)	440
AdeI	CACNNNGTG	1 cut(s)	582
AflIII	ACRYGT	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	82
AjuI	GAANNNNNNNTTGG	2 cut(s)	479, 511
AleI	CACNNNNGTG	1 cut(s)	285
AluBI	AGCT	8 cut(s)	31, 244, 330, 367, 429, 454, 533, 653
AluI	AGCT	8 cut(s)	31, 244, 330, 367, 429, 454, 533, 653
Alw21I	GWGCWC	4 cut(s)	49, 75, 246, 431
AlwI	GGATC	3 cut(s)	253, 266, 620
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	2 cut(s)	14, 653
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	2 cut(s)	377, 481
AsuHPI	GGTGA	1 cut(s)	568
AvaII	GGWCC	2 cut(s)	377, 481
BamHI	GGATCC	1 cut(s)	258
BanII	GRGCYC	2 cut(s)	246, 431
BauI	CACGAG	1 cut(s)	534
Bbv12I	GWGCWC	4 cut(s)	49, 75, 246, 431
BbvI	GCAGC	1 cut(s)	640
BccI	CCATC	1 cut(s)	301
BceAI	ACGGC	1 cut(s)	42
BciVI	GTATCC	1 cut(s)	531
BclI	TGATCA	1 cut(s)	573
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	2 cut(s)	15, 331
BfoI	RGCGCY	1 cut(s)	159
BfuI	GTATCC	1 cut(s)	531
BisI	GCNGC	4 cut(s)	15, 66, 159, 654
BlsI	GCNGC	4 cut(s)	16, 67, 160, 655
Bme18I	GGWCC	2 cut(s)	377, 481
BmgT120I	GGNCC	2 cut(s)	377, 481
BmiI	GGNNCC	2 cut(s)	260, 483
BmsI	GCATC	1 cut(s)	455
BplI	GAGNNNNNCTC	2 cut(s)	36, 68
BpuEI	CTTGAG	1 cut(s)	461
BsaAI	YACGTR	1 cut(s)	519
BsaJI	CCNNGG	1 cut(s)	262
BsaWI	WCCGGW	2 cut(s)	41, 463
Bse3DI	GCAATG	1 cut(s)	634
BseDI	CCNNGG	1 cut(s)	262
BseMI	GCAATG	1 cut(s)	634
BseMII	CTCAG	1 cut(s)	408
BseX3I	CGGCCG	1 cut(s)	55
BseXI	GCAGC	1 cut(s)	640
Bsh1236I	CGCG	1 cut(s)	103
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	57
BsiEI	CGRYCG	1 cut(s)	58
BsiHKAI	GWGCWC	4 cut(s)	49, 75, 246, 431
BsiSI	CCGG	2 cut(s)	42, 464
BslFI	GGGAC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	57
Bsp1286I	GDGCHC	4 cut(s)	49, 75, 246, 431
Bsp143I	GATC	4 cut(s)	258, 350, 573, 612
BspACI	CCGC	2 cut(s)	66, 159
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	409
BspFNI	CGCG	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	260, 483
BspMAI	CTGCAG	1 cut(s)	19
BspPI	GGATC	3 cut(s)	253, 266, 620
BspQI	GCTCTTC	1 cut(s)	419
BsrBI	CCGCTC	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	634
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	4 cut(s)	258, 350, 573, 612
BssSI	CACGAG	1 cut(s)	534
BssT1I	CCWWGG	1 cut(s)	262
Bst2BI	CACGAG	1 cut(s)	534
Bst4CI	ACNGT	2 cut(s)	287, 335
Bst6I	CTCTTC	2 cut(s)	230, 419
BstBAI	YACGTR	1 cut(s)	519
BstC8I	GCNNGC	1 cut(s)	531
BstDEI	CTNAG	2 cut(s)	339, 417
BstFNI	CGCG	1 cut(s)	103
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	4 cut(s)	261, 353, 576, 615
BstMBI	GATC	4 cut(s)	258, 350, 573, 612
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	3 cut(s)	153, 179, 364
BstSFI	CTRYAG	2 cut(s)	15, 331
BstSNI	TACGTA	1 cut(s)	519
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	640
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
BstZI	CGGCCG	1 cut(s)	55
BsuI	GTATCC	1 cut(s)	531
BsuRI	GGCC	1 cut(s)	57
BtgZI	GCGATG	1 cut(s)	305
Cac8I	GCNNGC	1 cut(s)	531
CfoI	GCGC	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	377, 481
CseI	GACGC	1 cut(s)	109
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	9 cut(s)	31, 57, 244, 330, 367, 429, 454, 533, 653
CviKI_1	RGCY	9 cut(s)	31, 57, 244, 330, 367, 429, 454, 533, 653
DdeI	CTNAG	2 cut(s)	339, 417
DpnI	GATC	4 cut(s)	260, 352, 575, 614
DpnII	GATC	4 cut(s)	258, 350, 573, 612
DraIII	CACNNNGTG	1 cut(s)	582
EaeI	YGGCCR	1 cut(s)	55
EagI	CGGCCG	1 cut(s)	55
Eam1104I	CTCTTC	2 cut(s)	230, 419
EarI	CTCTTC	2 cut(s)	230, 419
Ecl136II	GAGCTC	2 cut(s)	244, 429
EclXI	CGGCCG	1 cut(s)	55
Eco105I	TACGTA	1 cut(s)	519
Eco130I	CCWWGG	1 cut(s)	262
Eco24I	GRGCYC	2 cut(s)	246, 431
Eco47I	GGWCC	2 cut(s)	377, 481
Eco52I	CGGCCG	1 cut(s)	55
Eco53kI	GAGCTC	2 cut(s)	244, 429
Eco57I	CTGAAG	1 cut(s)	440
EcoICRI	GAGCTC	2 cut(s)	244, 429
EcoT14I	CCWWGG	1 cut(s)	262
EcoT38I	GRGCYC	2 cut(s)	246, 431
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	1 cut(s)	190
FaiI	YATR	4 cut(s)	188, 276, 360, 389
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	1 cut(s)	186
FbaI	TGATCA	1 cut(s)	573
Fnu4HI	GCNGC	4 cut(s)	15, 66, 159, 654
FriOI	GRGCYC	2 cut(s)	246, 431
Fsp4HI	GCNGC	4 cut(s)	15, 66, 159, 654
FspBI	CTAG	1 cut(s)	354
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	4 cut(s)	15, 66, 159, 654
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	2 cut(s)	42, 464
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	190
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HindIII	AAGCTT	3 cut(s)	29, 365, 452
HinfI	GANTC	8 cut(s)	7, 125, 217, 269, 295, 413, 460, 539
HpaII	CCGG	2 cut(s)	42, 464
HphI	GGTGA	1 cut(s)	568
Hpy166II	GTNNAC	2 cut(s)	211, 481
Hpy188I	TCNGA	5 cut(s)	36, 130, 258, 418, 459
Hpy188III	TCNNGA	2 cut(s)	25, 536
Hpy8I	GTNNAC	2 cut(s)	211, 481
Hpy99I	CGWCG	4 cut(s)	63, 173, 233, 258
HpyAV	CCTTC	2 cut(s)	614, 637
HpyCH4III	ACNGT	2 cut(s)	287, 335
HpyCH4IV	ACGT	1 cut(s)	518
HpyCH4V	TGCA	2 cut(s)	17, 473
HpyF10VI	GCNNNNNNNGC	3 cut(s)	153, 179, 364
HpyF3I	CTNAG	2 cut(s)	339, 417
HpySE526I	ACGT	1 cut(s)	518
Hsp92II	CATG	1 cut(s)	190
HspAI	GCGC	1 cut(s)	156
Ksp22I	TGATCA	1 cut(s)	573
Kzo9I	GATC	4 cut(s)	258, 350, 573, 612
LguI	GCTCTTC	1 cut(s)	419
LmnI	GCTCC	2 cut(s)	44, 624
LpnPI	CCDG	6 cut(s)	38, 55, 405, 477, 537, 543
Lsp1109I	GCAGC	1 cut(s)	640
LweI	GCATC	1 cut(s)	455
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	1 cut(s)	518
MaeIII	GTNAC	2 cut(s)	104, 194
MalI	GATC	4 cut(s)	260, 352, 575, 614
MbiI	CCGCTC	1 cut(s)	161
MboI	GATC	4 cut(s)	258, 350, 573, 612
MboII	GAAGA	7 cut(s)	193, 196, 217, 316, 436, 523, 644
MfeI	CAATTG	1 cut(s)	474
MflI	RGATCY	1 cut(s)	258
MhlI	GDGCHC	4 cut(s)	49, 75, 246, 431
MluCI	AATT	3 cut(s)	117, 141, 474
MluI	ACGCGT	1 cut(s)	101
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	3 cut(s)	153, 236, 404
MnlI	CCTC	7 cut(s)	158, 185, 188, 231, 305, 414, 436
MslI	CAYNNNNRTG	1 cut(s)	285
MspI	CCGG	2 cut(s)	42, 464
MunI	CAATTG	1 cut(s)	474
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	3 cut(s)	153, 179, 364
NdeII	GATC	4 cut(s)	258, 350, 573, 612
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	2 cut(s)	260, 483
NmeAIII	GCCGAG	2 cut(s)	33, 94
OliI	CACNNNNGTG	1 cut(s)	285
PciSI	GCTCTTC	1 cut(s)	419
PfeI	GAWTC	7 cut(s)	7, 217, 269, 295, 413, 460, 539
PkrI	GCNGC	4 cut(s)	16, 67, 160, 655
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Ppu21I	YACGTR	1 cut(s)	519
Psp124BI	GAGCTC	2 cut(s)	246, 431
PspN4I	GGNNCC	2 cut(s)	260, 483
PspPI	GGNCC	2 cut(s)	377, 481
PstI	CTGCAG	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	258
RseI	CAYNNNNRTG	1 cut(s)	285
SacI	GAGCTC	2 cut(s)	246, 431
SapI	GCTCTTC	1 cut(s)	419
SatI	GCNGC	4 cut(s)	15, 66, 159, 654
Sau3AI	GATC	4 cut(s)	258, 350, 573, 612
Sau96I	GGNCC	2 cut(s)	377, 481
SchI	GAGTC	1 cut(s)	119
SduI	GDGCHC	4 cut(s)	49, 75, 246, 431
SfaNI	GCATC	1 cut(s)	455
SfcI	CTRYAG	2 cut(s)	15, 331
SinI	GGWCC	2 cut(s)	377, 481
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
SnaBI	TACGTA	1 cut(s)	519
Sse9I	AATT	3 cut(s)	117, 141, 474
SsiI	CCGC	2 cut(s)	66, 159
SspMI	CTAG	1 cut(s)	354
SstI	GAGCTC	2 cut(s)	246, 431
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	2 cut(s)	287, 335
TaiI	ACGT	1 cut(s)	521
TaqI	TCGA	4 cut(s)	123, 228, 349, 449
TaqII	GACCGA	1 cut(s)	532
TasI	AATT	3 cut(s)	117, 141, 474
TauI	GCSGC	2 cut(s)	68, 161
TfiI	GAWTC	7 cut(s)	7, 217, 269, 295, 413, 460, 539
TseI	GCWGC	2 cut(s)	14, 653
TspDTI	ATGAA	4 cut(s)	308, 617, 645, 656
TspGWI	ACGGA	2 cut(s)	123, 140
VpaK11BI	GGWCC	2 cut(s)	377, 481
XcmI	CCANNNNNNNNNTGG	1 cut(s)	586
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.