Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001898

Physical Location & Seq

Genomic Coordinates Forward (+)

8301009 .. 8301635

Gene Structure 627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006546

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGATTTTCATCGCTGCCATGGCCGACAACAAGGCCCGCTTCATGTTCGTCAACACCAACTCCCTTTGGGACAAAATCGTCGAACAAATGACCAAGAAGATCTGCTTCTACTCTCCCTCCATGAACACTCTCTGGTGCACCGACGGCTTCCTCACCAATAGTCACAGCCCTAAGAAGTTCAGGTCTCGCCGGAAGAAGATCGTCTTCGGACCGACTCAGCCGCCAGACTGCCTCGTGGTTTTTGACTCCGAGAGGAAGTCGTCGGTGATTCTCGAGGCGCATAGGTTGCAGATTCCGATTGTTTCACTTATGGACTCGGACATGCCTATCGAGTACTACAACAAGATCACGTATCCGATTCCGTGTAATTCCTCAGTGCAATTTGTGTACCTGTTCTGCAATTTGATCACCAAGACGTTCATGCTTCAGCAGAAGAAGAGCGGCGCCGTTTCGGCCGAAATTGAGACTAGTGAGCGAGTGGGGGTTATAGAGGAGGCTAAGAGCGCAAAGAAGGATGAGGTGCTTGTGGTTCAATCAATTAAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

183

Amino Acids

20.77

Weight (kDa)

9.07

Isoelectric Point (pI)

54.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S2	PF00318	73 - 139	2e-10	Ribosomal protein S2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03600
fragaria_vesca	FvH4_7g08140
malus_domestica	MD02G1230600.v1.1
prunus_persica	Prupe.2G107500_v2.0.a1
pyrus_communis	pycom02g19970 pycom07g06540
rosa_chinensis	RchiOBHm_Chr1g0341081 RchiOBHm_Chr1g0363821 RchiOBHm_Chr1g0383121 RchiOBHm_Chr2g0085551 RchiOBHm_Chr3g0481141 RchiOBHm_Chr5g0027611 RchiOBHm_Chr5g0054321 RchiOBHm_Chr6g0246101
rosa_laevigata	RLG00000003952 RLG00000006546 RLG00000013359 RLG00000020654 RLG00000029063
rosa_multiflora	Rmu_sc0000533.1_g000047 Rmu_sc0000821.1_g000002 Rmu_sc0001211.1_g000068 Rmu_sc0002200.1_g000002 Rmu_sc0004332.1_g000001 Rmu_sc0004577.1_g000014 Rmu_sc0008563.1_g000010 Rmu_sc0012351.1_g000004 Rmu_ssc0000190.1_g000008
rosa_roxburghii	Rroxscaffold_1G00011600 Rroxscaffold_4G00311710
rosa_rugosa	Rorug01G0160000.1 Rorug05G0092000
rosa_samantha	Rh1AG174300 Rh1BG142600 Rh1BG221400 Rh1CG162100 Rh1CG365900 Rh1DG174200 Rh1DG248400 Rh1DG383600 Rh3AG240800 Rh5AG444100 Rh5DG194400
rosa_wichuraiana	Rw1G014550 Rw4G015450 Rw5G024540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AccB1I	GGYRCC	1 cut(s)	443
AccBSI	CCGCTC	1 cut(s)	441
AciI	CCGC	3 cut(s)	37, 221, 441
AcoI	YGGCCR	2 cut(s)	21, 453
AcuI	CTGAAG	1 cut(s)	410
AcyI	GRCGYC	1 cut(s)	444
AfaI	GTAC	2 cut(s)	335, 389
AgsI	TTSAA	1 cut(s)	533
AhlI	ACTAGT	1 cut(s)	467
Alw21I	GWGCWC	1 cut(s)	140
Alw26I	GTCTC	2 cut(s)	189, 458
Alw44I	GTGCAC	1 cut(s)	136
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	3 cut(s)	21, 33, 453
ApaLI	GTGCAC	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	14
AspLEI	GCGC	3 cut(s)	280, 446, 506
AspS9I	GGNCC	2 cut(s)	34, 209
AsuHPI	GGTGA	3 cut(s)	145, 277, 400
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	209
BaeGI	GKGCMC	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	443
BauI	CACGAG	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	196
Bbv12I	GWGCWC	1 cut(s)	140
BceAI	ACGGC	2 cut(s)	160, 431
BciVI	GTATCC	1 cut(s)	363
BclI	TGATCA	1 cut(s)	405
BcoDI	GTCTC	2 cut(s)	189, 458
BcuI	ACTAGT	1 cut(s)	467
BfaI	CTAG	1 cut(s)	468
BfoI	RGCGCY	1 cut(s)	447
BfuI	GTATCC	1 cut(s)	363
BglI	GCCNNNNNGGC	1 cut(s)	452
BglII	AGATCT	1 cut(s)	99
BisI	GCNGC	3 cut(s)	15, 221, 442
BlsI	GCNGC	3 cut(s)	16, 222, 443
BmcAI	AGTACT	1 cut(s)	335
Bme18I	GGWCC	1 cut(s)	209
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	34, 209
BmiI	GGNNCC	1 cut(s)	445
BpiI	GAAGAC	1 cut(s)	196
BsaAI	YACGTR	1 cut(s)	351
BsaBI	GATNNNNATC	1 cut(s)	8
BsaHI	GRCGYC	1 cut(s)	444
BsaI	GGTCTC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	18
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 101, 131
Bse8I	GATNNNNATC	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	520
BseJI	GATNNNNATC	1 cut(s)	8
BseMII	CTCAG	2 cut(s)	230, 387
BseRI	GAGGAG	1 cut(s)	506
BseSI	GKGCMC	1 cut(s)	140
BseX3I	CGGCCG	1 cut(s)	453
Bsh1285I	CGRYCG	1 cut(s)	456
BshFI	GGCC	3 cut(s)	23, 35, 455
BshNI	GGYRCC	1 cut(s)	443
BsiEI	CGRYCG	1 cut(s)	456
BsiHKAI	GWGCWC	1 cut(s)	140
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	190
BslFI	GGGAC	1 cut(s)	83
BsmAI	GTCTC	2 cut(s)	189, 458
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	3 cut(s)	23, 35, 455
Bso31I	GGTCTC	1 cut(s)	189
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	4 cut(s)	99, 198, 345, 405
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	3 cut(s)	37, 221, 441
BspANI	GGCC	3 cut(s)	23, 35, 455
BspCNI	CTCAG	2 cut(s)	229, 386
BspLI	GGNNCC	1 cut(s)	445
BspQI	GCTCTTC	1 cut(s)	431
BspT107I	GGYRCC	1 cut(s)	443
BspTNI	GGTCTC	1 cut(s)	189
BsrBI	CCGCTC	1 cut(s)	441
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	4 cut(s)	99, 198, 345, 405
BssNI	GRCGYC	1 cut(s)	444
BssSI	CACGAG	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	18
Bst2BI	CACGAG	1 cut(s)	233
Bst6I	CTCTTC	1 cut(s)	431
BstACI	GRCGYC	1 cut(s)	444
BstAPI	GCANNNNNTGC	1 cut(s)	286
BstBAI	YACGTR	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	4 cut(s)	171, 216, 373, 498
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	520
BstH2I	RGCGCY	1 cut(s)	447
BstHHI	GCGC	3 cut(s)	280, 446, 506
BstKTI	GATC	4 cut(s)	102, 201, 348, 408
BstMAI	GTCTC	2 cut(s)	189, 458
BstMBI	GATC	4 cut(s)	99, 198, 345, 405
BstMCI	CGRYCG	1 cut(s)	456
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 144, 286, 452, 503
BstNSI	RCATGY	1 cut(s)	325
BstSLI	GKGCMC	1 cut(s)	140
BstV2I	GAAGAC	1 cut(s)	196
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BstZI	CGGCCG	1 cut(s)	453
BsuI	GTATCC	1 cut(s)	363
BsuRI	GGCC	3 cut(s)	23, 35, 455
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	520
BtsIMutI	CAGTG	1 cut(s)	381
Cac8I	GCNNGC	1 cut(s)	37
CfoI	GCGC	3 cut(s)	280, 446, 506
Cfr13I	GGNCC	2 cut(s)	34, 209
CpoI	CGGWCCG	1 cut(s)	209
Csp6I	GTAC	2 cut(s)	334, 388
CspI	CGGWCCG	1 cut(s)	209
CviAII	CATG	5 cut(s)	19, 43, 121, 322, 421
CviJI	RGCY	7 cut(s)	23, 35, 147, 168, 220, 455, 497
CviKI_1	RGCY	7 cut(s)	23, 35, 147, 168, 220, 455, 497
CviQI	GTAC	2 cut(s)	334, 388
DdeI	CTNAG	4 cut(s)	171, 216, 373, 498
DinI	GGCGCC	1 cut(s)	445
DpnI	GATC	4 cut(s)	101, 200, 347, 407
DpnII	GATC	4 cut(s)	99, 198, 345, 405
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
EaeI	YGGCCR	2 cut(s)	21, 453
EagI	CGGCCG	1 cut(s)	453
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
EclXI	CGGCCG	1 cut(s)	453
Eco130I	CCWWGG	1 cut(s)	18
Eco31I	GGTCTC	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	209
Eco52I	CGGCCG	1 cut(s)	453
Eco57I	CTGAAG	1 cut(s)	410
Eco88I	CYCGRG	1 cut(s)	272
EcoT14I	CCWWGG	1 cut(s)	18
EgeI	GGCGCC	1 cut(s)	445
EheI	GGCGCC	1 cut(s)	445
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	5 cut(s)	22, 46, 124, 325, 424
FaiI	YATR	8 cut(s)	20, 44, 122, 282, 311, 323, 422, 488
FalI	AAGNNNNNCTT	6 cut(s)	23, 55, 89, 121, 188, 220
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	5 cut(s)	18, 42, 120, 321, 420
FauI	CCCGC	1 cut(s)	44
FbaI	TGATCA	1 cut(s)	405
Fnu4HI	GCNGC	3 cut(s)	15, 221, 442
FokI	GGATG	1 cut(s)	527
Fsp4HI	GCNGC	3 cut(s)	15, 221, 442
FspBI	CTAG	1 cut(s)	468
GlaI	GCGC	3 cut(s)	279, 445, 505
GluI	GCNGC	3 cut(s)	15, 221, 442
HaeII	RGCGCY	1 cut(s)	447
HaeIII	GGCC	3 cut(s)	23, 35, 455
HapII	CCGG	1 cut(s)	190
HhaI	GCGC	3 cut(s)	280, 446, 506
Hin1I	GRCGYC	1 cut(s)	444
Hin1II	CATG	5 cut(s)	22, 46, 124, 325, 424
Hin6I	GCGC	3 cut(s)	278, 444, 504
HinP1I	GCGC	3 cut(s)	278, 444, 504
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HinfI	GANTC	6 cut(s)	214, 245, 268, 292, 314, 358
HpaII	CCGG	1 cut(s)	190
HphI	GGTGA	3 cut(s)	145, 277, 400
Hpy166II	GTNNAC	3 cut(s)	52, 138, 388
Hpy188I	TCNGA	5 cut(s)	209, 250, 297, 319, 357
Hpy188III	TCNNGA	1 cut(s)	272
Hpy8I	GTNNAC	3 cut(s)	52, 138, 388
Hpy99I	CGWCG	3 cut(s)	83, 146, 265
HpyAV	CCTTC	1 cut(s)	505
HpyCH4IV	ACGT	2 cut(s)	350, 416
HpyCH4V	TGCA	4 cut(s)	138, 289, 379, 399
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 144, 286, 452, 503
HpyF3I	CTNAG	4 cut(s)	171, 216, 373, 498
HpySE526I	ACGT	2 cut(s)	350, 416
Hsp92I	GRCGYC	1 cut(s)	444
Hsp92II	CATG	5 cut(s)	22, 46, 124, 325, 424
HspAI	GCGC	3 cut(s)	278, 444, 504
KasI	GGCGCC	1 cut(s)	443
Ksp22I	TGATCA	1 cut(s)	405
Kzo9I	GATC	4 cut(s)	99, 198, 345, 405
LguI	GCTCTTC	1 cut(s)	431
LpnPI	CCDG	5 cut(s)	118, 166, 203, 237, 404
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	2 cut(s)	350, 416
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	4 cut(s)	101, 200, 347, 407
MbiI	CCGCTC	1 cut(s)	441
MboI	GATC	4 cut(s)	99, 198, 345, 405
MboII	GAAGA	6 cut(s)	109, 196, 205, 208, 445, 448
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	5 cut(s)	367, 380, 400, 459, 537
Mly113I	GGCGCC	1 cut(s)	444
MlyI	GAGTC	3 cut(s)	208, 239, 308
MnlI	CCTC	9 cut(s)	127, 161, 242, 246, 268, 382, 484, 487, 511
MseI	TTAA	1 cut(s)	540
MspI	CCGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	5 cut(s)	20, 144, 286, 452, 503
NarI	GGCGCC	1 cut(s)	444
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	4 cut(s)	99, 198, 345, 405
NlaIII	CATG	5 cut(s)	22, 46, 124, 325, 424
NlaIV	GGNNCC	1 cut(s)	445
NmuCI	GTSAC	1 cut(s)	161
NspI	RCATGY	1 cut(s)	325
PaeR7I	CTCGAG	1 cut(s)	272
PciSI	GCTCTTC	1 cut(s)	431
PfeI	GAWTC	3 cut(s)	268, 292, 358
PkrI	GCNGC	3 cut(s)	16, 222, 443
PleI	GAGTC	3 cut(s)	208, 239, 308
PluTI	GGCGCC	1 cut(s)	447
PpsI	GAGTC	3 cut(s)	208, 239, 308
Ppu21I	YACGTR	1 cut(s)	351
PspN4I	GGNNCC	1 cut(s)	445
PspPI	GGNCC	2 cut(s)	34, 209
PsuI	RGATCY	1 cut(s)	99
RsaI	GTAC	2 cut(s)	335, 389
RsaNI	GTAC	2 cut(s)	334, 388
Rsr2I	CGGWCCG	1 cut(s)	209
RsrII	CGGWCCG	1 cut(s)	209
SapI	GCTCTTC	1 cut(s)	431
SaqAI	TTAA	1 cut(s)	540
SatI	GCNGC	3 cut(s)	15, 221, 442
Sau3AI	GATC	4 cut(s)	99, 198, 345, 405
Sau96I	GGNCC	2 cut(s)	34, 209
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	3 cut(s)	208, 239, 308
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	6 cut(s)	185, 287, 353, 393, 419, 522
SfoI	GGCGCC	1 cut(s)	445
Sfr274I	CTCGAG	1 cut(s)	272
SinI	GGWCC	1 cut(s)	209
SlaI	CTCGAG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SpeI	ACTAGT	1 cut(s)	467
Sse9I	AATT	5 cut(s)	367, 380, 400, 459, 537
SsiI	CCGC	3 cut(s)	37, 221, 441
SspDI	GGCGCC	1 cut(s)	443
SspMI	CTAG	1 cut(s)	468
StyI	CCWWGG	1 cut(s)	18
TaiI	ACGT	2 cut(s)	353, 419
TaqI	TCGA	3 cut(s)	81, 273, 330
TaqII	GACCGA	1 cut(s)	226
TasI	AATT	5 cut(s)	367, 380, 400, 459, 537
TatI	WGTACW	1 cut(s)	333
TauI	GCSGC	2 cut(s)	223, 444
TfiI	GAWTC	3 cut(s)	268, 292, 358
Tru1I	TTAA	1 cut(s)	540
Tru9I	TTAA	1 cut(s)	540
TscAI	CASTG	1 cut(s)	381
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	3 cut(s)	31, 137, 409
TspGWI	ACGGA	1 cut(s)	351
TspRI	CASTG	1 cut(s)	381
VneI	GTGCAC	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	209
XceI	RCATGY	1 cut(s)	325
XhoI	CTCGAG	1 cut(s)	272
XspI	CTAG	1 cut(s)	468
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.