Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001898

Physical Location & Seq

Genomic Coordinates Reverse (-)

939472 .. 939980

Gene Structure 509 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46110

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTTCGTCAACACCAACTCCCTCTGGGACGAAATCGTCGAACAAATGACCAAGAAGATCGGCTGCTACTCTCCCTCCATGAACACTCTCTGGCGCACCGGCGGCTTCCTCACCAATAGTCACAGCCCTAAGAAGTTCAGGTCTCGCCGGAAGAAGATCGTCTTCGGACCGACTCAGCCGCCGGACTGCCTCGTGGTTTTCGACTCCGAGAGGAAGTCGTCGGTGATTCTCGAGGCGCATAGGTTGCAGATTCCGATTGTTTCGCTTGTGGACTCGGACATGCCTATCGAGTACTACAACAAGATCACGTATCCGATTCCGTGTAATTCCTCGGTGCAATTTGTGTACCTGTTCTGCAATTTGATCACCAAGACGTTCATGCTTCAGCAGAAGAAAAGCGGCGCCGATTCTGCCGAAATTGAGACTAGGTGTGTTGGTGTTTTTGGTGTGCACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

152

Amino Acids

17.38

Weight (kDa)

9.01

Isoelectric Point (pI)

50.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S2	PF00318	59 - 125	6.6e-11	Ribosomal protein S2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03600
fragaria_vesca	FvH4_7g08140
malus_domestica	MD02G1230600.v1.1
prunus_persica	Prupe.2G107500_v2.0.a1
pyrus_communis	pycom02g19970 pycom07g06540
rosa_chinensis	RchiOBHm_Chr1g0341081 RchiOBHm_Chr1g0363821 RchiOBHm_Chr1g0383121 RchiOBHm_Chr2g0085551 RchiOBHm_Chr3g0481141 RchiOBHm_Chr5g0027611 RchiOBHm_Chr5g0054321 RchiOBHm_Chr6g0246101
rosa_laevigata	RLG00000003952 RLG00000006546 RLG00000013359 RLG00000020654 RLG00000029063
rosa_multiflora	Rmu_sc0000533.1_g000047 Rmu_sc0000821.1_g000002 Rmu_sc0001211.1_g000068 Rmu_sc0002200.1_g000002 Rmu_sc0004332.1_g000001 Rmu_sc0004577.1_g000014 Rmu_sc0008563.1_g000010 Rmu_sc0012351.1_g000004 Rmu_ssc0000190.1_g000008
rosa_roxburghii	Rroxscaffold_1G00011600 Rroxscaffold_4G00311710
rosa_rugosa	Rorug01G0160000.1 Rorug05G0092000
rosa_samantha	Rh1AG174300 Rh1BG142600 Rh1BG221400 Rh1CG162100 Rh1CG365900 Rh1DG174200 Rh1DG248400 Rh1DG383600 Rh3AG240800 Rh5AG444100 Rh5DG194400
rosa_wichuraiana	Rw1G014550 Rw4G015450 Rw5G024540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	35
AccB1I	GGYRCC	1 cut(s)	401
AciI	CCGC	3 cut(s)	102, 179, 399
AcuI	CTGAAG	1 cut(s)	368
AcyI	GRCGYC	1 cut(s)	402
AfaI	GTAC	2 cut(s)	293, 347
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	2 cut(s)	147, 416
Alw44I	GTGCAC	1 cut(s)	449
Ama87I	CYCGRG	1 cut(s)	230
ApaLI	GTGCAC	1 cut(s)	449
ApeKI	GCWGC	1 cut(s)	63
AspLEI	GCGC	3 cut(s)	96, 238, 404
AspS9I	GGNCC	1 cut(s)	167
AsuHPI	GGTGA	3 cut(s)	103, 235, 358
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	167
BaeGI	GKGCMC	1 cut(s)	453
BanI	GGYRCC	1 cut(s)	401
BauI	CACGAG	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	50
BciVI	GTATCC	1 cut(s)	321
BclI	TGATCA	1 cut(s)	363
BcoDI	GTCTC	2 cut(s)	147, 416
BfaI	CTAG	1 cut(s)	426
BfoI	RGCGCY	1 cut(s)	405
BfuI	GTATCC	1 cut(s)	321
BisI	GCNGC	4 cut(s)	64, 103, 179, 400
BlsI	GCNGC	4 cut(s)	65, 104, 180, 401
BmcAI	AGTACT	1 cut(s)	293
Bme18I	GGWCC	1 cut(s)	167
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	403
BpiI	GAAGAC	1 cut(s)	154
BsaAI	YACGTR	1 cut(s)	309
BsaHI	GRCGYC	1 cut(s)	402
BsaI	GGTCTC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	330
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 59, 89
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	454
BseDI	CCNNGG	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	1 cut(s)	454
BseSI	GKGCMC	1 cut(s)	453
BseXI	GCAGC	1 cut(s)	50
BshNI	GGYRCC	1 cut(s)	401
BsiHKAI	GWGCWC	1 cut(s)	453
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	3 cut(s)	99, 148, 182
BslFI	GGGAC	1 cut(s)	41
BsmAI	GTCTC	2 cut(s)	147, 416
BsmFI	GGGAC	1 cut(s)	41
Bso31I	GGTCTC	1 cut(s)	147
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp143I	GATC	4 cut(s)	57, 156, 303, 363
BspACI	CCGC	3 cut(s)	102, 179, 399
BspCNI	CTCAG	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	403
BspT107I	GGYRCC	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	147
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	454
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	4 cut(s)	57, 156, 303, 363
BssNI	GRCGYC	1 cut(s)	402
BssSI	CACGAG	1 cut(s)	191
Bst2BI	CACGAG	1 cut(s)	191
BstACI	GRCGYC	1 cut(s)	402
BstAPI	GCANNNNNTGC	1 cut(s)	244
BstBAI	YACGTR	1 cut(s)	309
BstDEI	CTNAG	2 cut(s)	129, 174
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	3 cut(s)	96, 238, 404
BstKTI	GATC	4 cut(s)	60, 159, 306, 366
BstMAI	GTCTC	2 cut(s)	147, 416
BstMBI	GATC	4 cut(s)	57, 156, 303, 363
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 244, 410
BstNSI	RCATGY	1 cut(s)	283
BstSLI	GKGCMC	1 cut(s)	453
BstV1I	GCAGC	1 cut(s)	50
BstV2I	GAAGAC	1 cut(s)	154
BsuI	GTATCC	1 cut(s)	321
CfoI	GCGC	3 cut(s)	96, 238, 404
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	167
CpoI	CGGWCCG	1 cut(s)	167
Csp6I	GTAC	2 cut(s)	292, 346
CspI	CGGWCCG	1 cut(s)	167
CviAII	CATG	3 cut(s)	79, 280, 379
CviJI	RGCY	4 cut(s)	63, 105, 126, 178
CviKI_1	RGCY	4 cut(s)	63, 105, 126, 178
CviQI	GTAC	2 cut(s)	292, 346
DdeI	CTNAG	2 cut(s)	129, 174
DinI	GGCGCC	1 cut(s)	403
DpnI	GATC	4 cut(s)	59, 158, 305, 365
DpnII	GATC	4 cut(s)	57, 156, 303, 363
DrdI	GACNNNNNNGTC	1 cut(s)	35
DseDI	GACNNNNNNGTC	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	368
Eco88I	CYCGRG	1 cut(s)	230
EgeI	GGCGCC	1 cut(s)	403
EheI	GGCGCC	1 cut(s)	403
FaeI	CATG	3 cut(s)	82, 283, 382
FaiI	YATR	4 cut(s)	80, 240, 281, 380
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	3 cut(s)	78, 279, 378
FbaI	TGATCA	1 cut(s)	363
Fnu4HI	GCNGC	4 cut(s)	64, 103, 179, 400
Fsp4HI	GCNGC	4 cut(s)	64, 103, 179, 400
FspBI	CTAG	1 cut(s)	426
GlaI	GCGC	3 cut(s)	95, 237, 403
GluI	GCNGC	4 cut(s)	64, 103, 179, 400
HaeII	RGCGCY	1 cut(s)	405
HapII	CCGG	3 cut(s)	99, 148, 182
HhaI	GCGC	3 cut(s)	96, 238, 404
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	3 cut(s)	82, 283, 382
Hin6I	GCGC	3 cut(s)	94, 236, 402
HinP1I	GCGC	3 cut(s)	94, 236, 402
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	7 cut(s)	172, 203, 226, 250, 272, 316, 407
HpaII	CCGG	3 cut(s)	99, 148, 182
HphI	GGTGA	3 cut(s)	103, 235, 358
Hpy166II	GTNNAC	4 cut(s)	10, 271, 346, 451
Hpy188I	TCNGA	5 cut(s)	167, 208, 255, 277, 315
Hpy188III	TCNNGA	1 cut(s)	230
Hpy8I	GTNNAC	4 cut(s)	10, 271, 346, 451
Hpy99I	CGWCG	2 cut(s)	41, 223
HpyCH4IV	ACGT	2 cut(s)	308, 374
HpyCH4V	TGCA	4 cut(s)	247, 337, 357, 451
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 244, 410
HpyF3I	CTNAG	2 cut(s)	129, 174
HpySE526I	ACGT	2 cut(s)	308, 374
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	3 cut(s)	82, 283, 382
HspAI	GCGC	3 cut(s)	94, 236, 402
KasI	GGCGCC	1 cut(s)	401
Ksp22I	TGATCA	1 cut(s)	363
Kzo9I	GATC	4 cut(s)	57, 156, 303, 363
LpnPI	CCDG	7 cut(s)	10, 76, 112, 124, 161, 195, 362
Lsp1109I	GCAGC	1 cut(s)	50
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	2 cut(s)	308, 374
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	4 cut(s)	59, 158, 305, 365
MboI	GATC	4 cut(s)	57, 156, 303, 363
MboII	GAAGA	5 cut(s)	67, 154, 163, 166, 403
MhlI	GDGCHC	1 cut(s)	453
MluCI	AATT	4 cut(s)	325, 338, 358, 417
Mly113I	GGCGCC	1 cut(s)	402
MlyI	GAGTC	3 cut(s)	166, 197, 266
MnlI	CCTC	7 cut(s)	32, 85, 119, 200, 204, 226, 340
MspI	CCGG	3 cut(s)	99, 148, 182
MwoI	GCNNNNNNNGC	3 cut(s)	102, 244, 410
NarI	GGCGCC	1 cut(s)	402
NdeII	GATC	4 cut(s)	57, 156, 303, 363
NlaIII	CATG	3 cut(s)	82, 283, 382
NlaIV	GGNNCC	1 cut(s)	403
NmuCI	GTSAC	1 cut(s)	119
NspI	RCATGY	1 cut(s)	283
PaeR7I	CTCGAG	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	2 cut(s)	36, 198
PfeI	GAWTC	4 cut(s)	226, 250, 316, 407
PkrI	GCNGC	4 cut(s)	65, 104, 180, 401
PleI	GAGTC	3 cut(s)	166, 197, 266
PluTI	GGCGCC	1 cut(s)	405
PpsI	GAGTC	3 cut(s)	166, 197, 266
Ppu21I	YACGTR	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	403
PspPI	GGNCC	1 cut(s)	167
RsaI	GTAC	2 cut(s)	293, 347
RsaNI	GTAC	2 cut(s)	292, 346
Rsr2I	CGGWCCG	1 cut(s)	167
RsrII	CGGWCCG	1 cut(s)	167
SatI	GCNGC	4 cut(s)	64, 103, 179, 400
Sau3AI	GATC	4 cut(s)	57, 156, 303, 363
Sau96I	GGNCC	1 cut(s)	167
ScaI	AGTACT	1 cut(s)	293
SchI	GAGTC	3 cut(s)	166, 197, 266
SduI	GDGCHC	1 cut(s)	453
SetI	ASST	6 cut(s)	143, 245, 311, 351, 377, 431
SfoI	GGCGCC	1 cut(s)	403
Sfr274I	CTCGAG	1 cut(s)	230
SgrAI	CRCCGGYG	1 cut(s)	98
SinI	GGWCC	1 cut(s)	167
SlaI	CTCGAG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	4 cut(s)	325, 338, 358, 417
SsiI	CCGC	3 cut(s)	102, 179, 399
SspDI	GGCGCC	1 cut(s)	401
SspMI	CTAG	1 cut(s)	426
TaiI	ACGT	2 cut(s)	311, 377
TaqI	TCGA	4 cut(s)	39, 201, 231, 288
TaqII	GACCGA	1 cut(s)	184
TasI	AATT	4 cut(s)	325, 338, 358, 417
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	3 cut(s)	105, 181, 402
TfiI	GAWTC	4 cut(s)	226, 250, 316, 407
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	1 cut(s)	63
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	2 cut(s)	95, 367
TspGWI	ACGGA	1 cut(s)	309
VneI	GTGCAC	1 cut(s)	449
VpaK11BI	GGWCC	1 cut(s)	167
XceI	RCATGY	1 cut(s)	283
XhoI	CTCGAG	1 cut(s)	230
XspI	CTAG	1 cut(s)	426
ZrmI	AGTACT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.