Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002200.1

Orthogroup ID

OG0001898

Physical Location & Seq

Genomic Coordinates Forward (+)

5703 .. 14162

Gene Structure 8460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002200.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2286 bp

atgacgctccactccatagtaatccagaagctgctgagcaccaacgcccatctgggccgccgcgtcgcggcccaccacttcaagcagttcaccttcggccaccgcaacggcatggccgtcatcgactccgaccggaccctcatctgcctccgcaacgccgcccagttcatcgccgccatggccgagaacaaggcccgcttcatgttcgtcaacaccaactccctatgggatgaaatcgtcgaacaaatgaccaagaagatcggctgctactctccctccatgaacactctctggcgcaccggcggcttcctcaccaacagccacagcccgaagaagttcaggtctcgccggaagaagatcgtcttcggaccgactcagccgccggactgcctcgtggttttcgactccgagaggaagtcgtcggtgattctcgaggcgcataggttgcagattccgattgtctcgcttgtggactcggacatgcctattgagtactacaacaagatcacgtatccgattccgtgtaattcctcagtgcaatttgtgtacctgttctgcaatttgatcaccaagacgttcttgcttcagcagaagaagagcggcgccgtttcggccgaaattgagactagtgagcaagtgggggttatagaggaggctaagagcgcaaagaaggatgagttgcttgtggttccttacgaattcttgcacatttctactgatgttgagaaaattgaggagatgctggacaagcttgttgtgatcaagttcaatggaggtttgggtacaagtatgggattcggtggccccaagtcaacgatggaaatttttgatgggttgacatctcttgacttaattgttaatcaaattgagtctctcaattctaagtatcactgcagtgttcctttggtccttgtgaacacagatagtacacatgaagatacgctgaaggtcttggagaaatattccaattcggacattgatattcagtctattaaacagacccaacatccacagctcaagtcacagggaggacagagtggtgaggatgaactgtatccctctggccacggagcagtattgctttcgcttgtgaaaaatggaaccctagatgtcctattatcaaaggggaaggagtatgtccttgtggttgactcagataatgtggctgctaaaattgacccaaaaattttagaccatctggttgaaaataagatagactactgtatggaggtcacacctacctcctcatatgattcagatttgattggttcacgcctacagaagtttgagcttgcagaaatagctcagaattccatcaaagatacggggaaattcaaacttgtcgatactggcagcttgtggttgaatgttagagccattaaaaggcttttggatacagatgaactaaagattgaggatttctctgtttcgaaggaaacagtgtctgatcaagttcttctgcaagaaacggcagttggttcagcaatacggttcttcaataatgctgttggtgtcaacgttcctaattctcaatttctttcaatgaaaaaaacatcagatctacttctgctaaagtcaaatctctatatgtatgatgaaggggttgtagttcggaatatagctagaaccaacccggcaaatcctgtgatcgaattagggcaggaatttgaaaaggtaagtggccttctaagtcgctttaagtccatgcccgacattattgacctggacagcttgaaggtcactggtgatgtttggtttggagctggtataactctcaaggggagagtaacaattcatgcagaacctgggatgaaattggaaattcctgatggagtagtaatagagaatgagagattgcctgtagaagtggaaagagaaggtcttactgacttcaagaatggtctcaaagatcctgaaagctggctgtcttcattggaaggaagcaactgctgccgatggtgggggataagctgtgataatacaactggagctgttattgcagctgatttccataacccacatccactgcatccatttgaagattctgcttcctctggcaggaactttaccggaagttccgctgacagagaattgcacttctacgagtccactgagcgcctaaactgcagtccttgcagttcgcaaatcgcaaccaatcagttggttggcaaattgcgacaatggttaagtcagcttgacaatcttggtaaactaaatctgtccggtaactcgtttatcgtcccatccccacctcatcaggatcattatcaaatatatacgagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

761

Amino Acids

84.71

Weight (kDa)

5.73

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03600
fragaria_vesca	FvH4_7g08140
malus_domestica	MD02G1230600.v1.1
prunus_persica	Prupe.2G107500_v2.0.a1
pyrus_communis	pycom02g19970 pycom07g06540
rosa_chinensis	RchiOBHm_Chr1g0341081 RchiOBHm_Chr1g0363821 RchiOBHm_Chr1g0383121 RchiOBHm_Chr2g0085551 RchiOBHm_Chr3g0481141 RchiOBHm_Chr5g0027611 RchiOBHm_Chr5g0054321 RchiOBHm_Chr6g0246101
rosa_laevigata	RLG00000003952 RLG00000006546 RLG00000013359 RLG00000020654 RLG00000029063
rosa_multiflora	Rmu_sc0000533.1_g000047 Rmu_sc0000821.1_g000002 Rmu_sc0001211.1_g000068 Rmu_sc0002200.1_g000002 Rmu_sc0004332.1_g000001 Rmu_sc0004577.1_g000014 Rmu_sc0008563.1_g000010 Rmu_sc0012351.1_g000004 Rmu_ssc0000190.1_g000008
rosa_roxburghii	Rroxscaffold_1G00011600 Rroxscaffold_4G00311710
rosa_rugosa	Rorug01G0160000.1 Rorug05G0092000
rosa_samantha	Rh1AG174300 Rh1BG142600 Rh1BG221400 Rh1CG162100 Rh1CG365900 Rh1DG174200 Rh1DG248400 Rh1DG383600 Rh3AG240800 Rh5AG444100 Rh5DG194400
rosa_wichuraiana	Rw1G014550 Rw4G015450 Rw5G024540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	602
AccBSI	CCGCTC	1 cut(s)	600
AccII	CGCG	2 cut(s)	63, 68
AclI	AACGTT	1 cut(s)	1518
AclWI	GGATC	2 cut(s)	1904, 2268
AcoI	YGGCCR	5 cut(s)	97, 114, 180, 612, 1063
AcsI	RAATTY	7 cut(s)	698, 822, 1185, 1309, 1331, 1664, 1821
AcuI	CTGAAG	2 cut(s)	569, 965
AcyI	GRCGYC	1 cut(s)	603
AfaI	GTAC	4 cut(s)	494, 548, 784, 928
AfiI	CCNNNNNNNGG	4 cut(s)	67, 1383, 1960, 2058
AhlI	ACTAGT	1 cut(s)	626
AjnI	CCWGG	2 cut(s)	1722, 1804
AjuI	GAANNNNNNNTTGG	2 cut(s)	1458, 1490
AleI	CACNNNNGTG	1 cut(s)	894
Alw21I	GWGCWC	1 cut(s)	41
Alw26I	GTCTC	5 cut(s)	348, 466, 617, 876, 1907
AlwI	GGATC	2 cut(s)	1904, 2268
AlwNI	CAGNNNCTG	3 cut(s)	31, 1445, 1805
Ama87I	CYCGRG	1 cut(s)	431
ApeKI	GCWGC	6 cut(s)	31, 264, 1166, 1353, 1950, 2000
ApoI	RAATTY	7 cut(s)	698, 822, 1185, 1309, 1331, 1664, 1821
Asp700I	GAANNNNTTC	1 cut(s)	335
AspLEI	GCGC	5 cut(s)	297, 439, 605, 665, 2118
AspS9I	GGNCC	7 cut(s)	55, 70, 135, 193, 368, 803, 907
AsuC2I	CCSGG	1 cut(s)	1634
AsuHPI	GGTGA	6 cut(s)	82, 304, 436, 559, 1052, 1757
AsuII	TTCGAA	1 cut(s)	1430
AvaI	CYCGRG	1 cut(s)	431
AvaII	GGWCC	3 cut(s)	135, 368, 907
BalI	TGGCCA	1 cut(s)	1065
BanI	GGYRCC	1 cut(s)	602
BarI	GAAGNNNNNNTAC	2 cut(s)	1668, 1700
BauI	CACGAG	1 cut(s)	392
BbsI	GAAGAC	2 cut(s)	355, 1920
Bbv12I	GWGCWC	1 cut(s)	41
BbvI	GCAGC	6 cut(s)	18, 251, 1153, 1365, 1937, 2012
BccI	CCATC	8 cut(s)	57, 811, 824, 1203, 1322, 1823, 1950, 2251
BceAI	ACGGC	4 cut(s)	101, 124, 590, 1485
BciT130I	CCWGG	2 cut(s)	1724, 1806
BciVI	GTATCC	3 cut(s)	522, 1065, 1387
BclI	TGATCA	3 cut(s)	564, 759, 1447
BcnI	CCSGG	1 cut(s)	1634
BcoDI	GTCTC	5 cut(s)	348, 466, 617, 876, 1907
BcuI	ACTAGT	1 cut(s)	626
BfaI	CTAG	3 cut(s)	627, 1106, 1623
BfmI	CTRYAG	4 cut(s)	892, 1277, 1860, 2125
BfoI	RGCGCY	2 cut(s)	606, 2119
BfuI	GTATCC	3 cut(s)	522, 1065, 1387
BglI	GCCNNNNNGGC	2 cut(s)	179, 611
BglII	AGATCT	1 cut(s)	1558
BlpI	GCTNAGC	1 cut(s)	35
BmcAI	AGTACT	1 cut(s)	494
Bme1390I	CCNGG	3 cut(s)	1634, 1724, 1806
Bme18I	GGWCC	3 cut(s)	135, 368, 907
BmeT110I	CYCGRG	1 cut(s)	431
BmgT120I	GGNCC	7 cut(s)	55, 70, 135, 193, 368, 803, 907
BmiI	GGNNCC	5 cut(s)	137, 604, 690, 805, 1102
BmrFI	CCNGG	3 cut(s)	1634, 1724, 1806
BmrI	ACTGGG	1 cut(s)	157
BmsI	GCATC	2 cut(s)	729, 2038
BmuI	ACTGGG	1 cut(s)	157
BpiI	GAAGAC	2 cut(s)	355, 1920
BplI	GAGNNNNNCTC	2 cut(s)	1406, 1438
BpmI	CTGGAG	1 cut(s)	2007
Bpu1102I	GCTNAGC	1 cut(s)	35
Bpu14I	TTCGAA	1 cut(s)	1430
BpuEI	CTTGAG	2 cut(s)	1001, 1760
BpuMI	CCSGG	1 cut(s)	1634
BsaAI	YACGTR	1 cut(s)	510
BsaBI	GATNNNNATC	1 cut(s)	2265
BsaHI	GRCGYC	1 cut(s)	603
BsaI	GGTCTC	2 cut(s)	348, 1907
BsaJI	CCNNGG	3 cut(s)	177, 1066, 1805
BsaWI	WCCGGW	3 cut(s)	132, 2069, 2222
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 260, 290
Bsc4I	CCNNNNNNNGG	4 cut(s)	67, 1383, 1960, 2058
Bse118I	RCCGGY	1 cut(s)	299
Bse1I	ACTGG	4 cut(s)	163, 1354, 1747, 1990
Bse8I	GATNNNNATC	1 cut(s)	2265
BseBI	CCWGG	2 cut(s)	1724, 1806
BseDI	CCNNGG	3 cut(s)	177, 1066, 1805
BseGI	GGATG	8 cut(s)	235, 679, 1006, 1051, 1815, 2020, 2029, 2243
BseJI	GATNNNNATC	1 cut(s)	2265
BseLI	CCNNNNNNNGG	4 cut(s)	67, 1383, 1960, 2058
BseMII	CTCAG	6 cut(s)	26, 389, 546, 1167, 1319, 2103
BseNI	ACTGG	4 cut(s)	163, 1354, 1747, 1990
BseRI	GAGGAG	3 cut(s)	665, 749, 1234
BseX3I	CGGCCG	1 cut(s)	612
BseXI	GCAGC	6 cut(s)	18, 251, 1153, 1365, 1937, 2012
Bsh1236I	CGCG	2 cut(s)	63, 68
Bsh1285I	CGRYCG	2 cut(s)	133, 615
BshNI	GGYRCC	1 cut(s)	602
BsiEI	CGRYCG	2 cut(s)	133, 615
BsiHKAI	GWGCWC	1 cut(s)	41
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	7 cut(s)	133, 300, 349, 383, 1634, 2070, 2223
BslFI	GGGAC	1 cut(s)	2225
BslI	CCNNNNNNNGG	4 cut(s)	67, 1383, 1960, 2058
BsmAI	GTCTC	5 cut(s)	348, 466, 617, 876, 1907
BsmFI	GGGAC	1 cut(s)	2225
Bso31I	GGTCTC	2 cut(s)	348, 1907
BsoBI	CYCGRG	1 cut(s)	431
Bsp119I	TTCGAA	1 cut(s)	1430
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp1720I	GCTNAGC	1 cut(s)	35
Bsp19I	CCATGG	1 cut(s)	177
BspCNI	CTCAG	6 cut(s)	27, 388, 545, 1166, 1318, 2104
BspFNI	CGCG	2 cut(s)	63, 68
BspLI	GGNNCC	5 cut(s)	137, 604, 690, 805, 1102
BspMAI	CTGCAG	2 cut(s)	896, 2129
BspPI	GGATC	2 cut(s)	1904, 2268
BspQI	GCTCTTC	1 cut(s)	590
BspT104I	TTCGAA	1 cut(s)	1430
BspT107I	GGYRCC	1 cut(s)	602
BspTNI	GGTCTC	2 cut(s)	348, 1907
BsrBI	CCGCTC	1 cut(s)	600
BsrFI	RCCGGY	1 cut(s)	299
BsrI	ACTGG	4 cut(s)	163, 1354, 1747, 1990
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	3 cut(s)	177, 1066, 1805
BssNI	GRCGYC	1 cut(s)	603
BssSI	CACGAG	1 cut(s)	392
BssT1I	CCWWGG	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	392
Bst2UI	CCWGG	2 cut(s)	1724, 1806
Bst4CI	ACNGT	4 cut(s)	1053, 1223, 1441, 1491
Bst6I	CTCTTC	1 cut(s)	590
BstACI	GRCGYC	1 cut(s)	603
BstAPI	GCANNNNNTGC	3 cut(s)	445, 1950, 2133
BstBAI	YACGTR	1 cut(s)	510
BstBI	TTCGAA	1 cut(s)	1430
BstC8I	GCNNGC	3 cut(s)	196, 1293, 1922
BstDEI	CTNAG	9 cut(s)	35, 375, 532, 657, 882, 1153, 1305, 1688, 2112
BstDSI	CCRYGG	2 cut(s)	177, 1066
BstENI	CCTNNNNNAGG	1 cut(s)	2056
BstF5I	GGATG	8 cut(s)	235, 679, 1006, 1051, 1815, 2020, 2029, 2243
BstFNI	CGCG	2 cut(s)	63, 68
BstH2I	RGCGCY	2 cut(s)	606, 2119
BstHHI	GCGC	5 cut(s)	297, 439, 605, 665, 2118
BstMAI	GTCTC	5 cut(s)	348, 466, 617, 876, 1907
BstMCI	CGRYCG	2 cut(s)	133, 615
BstNI	CCWGG	2 cut(s)	1724, 1806
BstNSI	RCATGY	1 cut(s)	484
BstSCI	CCNGG	3 cut(s)	1632, 1722, 1804
BstSFI	CTRYAG	4 cut(s)	892, 1277, 1860, 2125
BstUI	CGCG	2 cut(s)	63, 68
BstV1I	GCAGC	6 cut(s)	18, 251, 1153, 1365, 1937, 2012
BstV2I	GAAGAC	2 cut(s)	355, 1920
BstX2I	RGATCY	2 cut(s)	1558, 1909
BstXI	CCANNNNNNTGG	1 cut(s)	2161
BstYI	RGATCY	2 cut(s)	1558, 1909
BstZI	CGGCCG	1 cut(s)	612
BsuI	GTATCC	3 cut(s)	522, 1065, 1387
BtgI	CCRYGG	2 cut(s)	177, 1066
BtgZI	GCGATG	1 cut(s)	154
BtsCI	GGATG	8 cut(s)	235, 679, 1006, 1051, 1815, 2020, 2029, 2243
BtsI	GCAGTG	3 cut(s)	889, 901, 2024
BtsIMutI	CAGTG	7 cut(s)	540, 889, 901, 1446, 1740, 2024, 2109
Cac8I	GCNNGC	3 cut(s)	196, 1293, 1922
CaiI	CAGNNNCTG	3 cut(s)	31, 1445, 1805
CfoI	GCGC	5 cut(s)	297, 439, 605, 665, 2118
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	7 cut(s)	55, 70, 135, 193, 368, 803, 907
CpoI	CGGWCCG	1 cut(s)	368
CseI	GACGC	2 cut(s)	13, 52
Csp6I	GTAC	4 cut(s)	493, 547, 783, 927
CspI	CGGWCCG	1 cut(s)	368
CviAII	CATG	8 cut(s)	112, 178, 202, 280, 481, 932, 1705, 1796
CviQI	GTAC	4 cut(s)	493, 547, 783, 927
DdeI	CTNAG	9 cut(s)	35, 375, 532, 657, 882, 1153, 1305, 1688, 2112
DinI	GGCGCC	1 cut(s)	604
EaeI	YGGCCR	5 cut(s)	97, 114, 180, 612, 1063
EagI	CGGCCG	1 cut(s)	612
Eam1104I	CTCTTC	1 cut(s)	590
EarI	CTCTTC	1 cut(s)	590
EclXI	CGGCCG	1 cut(s)	612
Eco130I	CCWWGG	1 cut(s)	177
Eco31I	GGTCTC	2 cut(s)	348, 1907
Eco47I	GGWCC	3 cut(s)	135, 368, 907
Eco52I	CGGCCG	1 cut(s)	612
Eco57I	CTGAAG	2 cut(s)	569, 965
Eco88I	CYCGRG	1 cut(s)	431
EcoNI	CCTNNNNNAGG	1 cut(s)	2056
EcoRI	GAATTC	2 cut(s)	698, 1309
EcoRII	CCWGG	2 cut(s)	1722, 1804
EcoT14I	CCWWGG	1 cut(s)	177
EgeI	GGCGCC	1 cut(s)	604
EheI	GGCGCC	1 cut(s)	604
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	8 cut(s)	115, 181, 205, 283, 484, 935, 1708, 1799
FalI	AAGNNNNNCTT	6 cut(s)	182, 214, 347, 379, 563, 595
FaqI	GGGAC	1 cut(s)	2225
FatI	CATG	8 cut(s)	111, 177, 201, 279, 480, 931, 1704, 1795
FauI	CCCGC	1 cut(s)	203
FauNDI	CATATG	1 cut(s)	1249
FbaI	TGATCA	3 cut(s)	564, 759, 1447
FokI	GGATG	8 cut(s)	242, 686, 993, 1058, 1822, 2007, 2016, 2230
FspBI	CTAG	3 cut(s)	627, 1106, 1623
GlaI	GCGC	5 cut(s)	296, 438, 604, 664, 2117
GsuI	CTGGAG	1 cut(s)	2007
HaeII	RGCGCY	2 cut(s)	606, 2119
HapII	CCGG	7 cut(s)	133, 300, 349, 383, 1634, 2070, 2223
HgaI	GACGC	2 cut(s)	13, 52
HhaI	GCGC	5 cut(s)	297, 439, 605, 665, 2118
Hin1I	GRCGYC	1 cut(s)	603
Hin1II	CATG	8 cut(s)	115, 181, 205, 283, 484, 935, 1708, 1799
Hin6I	GCGC	5 cut(s)	295, 437, 603, 663, 2116
HinP1I	GCGC	5 cut(s)	295, 437, 603, 663, 2116
HincII	GTYRAC	5 cut(s)	211, 813, 837, 1150, 1516
HindII	GTYRAC	5 cut(s)	211, 813, 837, 1150, 1516
HindIII	AAGCTT	1 cut(s)	749
HpaII	CCGG	7 cut(s)	133, 300, 349, 383, 1634, 2070, 2223
HphI	GGTGA	6 cut(s)	82, 304, 436, 559, 1052, 1757
Hpy188III	TCNNGA	7 cut(s)	25, 431, 845, 1826, 1894, 1913, 2258
Hpy99I	CGWCG	3 cut(s)	68, 242, 424
HpyCH4III	ACNGT	4 cut(s)	1053, 1223, 1441, 1491
HpyCH4IV	ACGT	3 cut(s)	509, 575, 1518
HpyF3I	CTNAG	9 cut(s)	35, 375, 532, 657, 882, 1153, 1305, 1688, 2112
HpySE526I	ACGT	3 cut(s)	509, 575, 1518
Hsp92I	GRCGYC	1 cut(s)	603
Hsp92II	CATG	8 cut(s)	115, 181, 205, 283, 484, 935, 1708, 1799
HspAI	GCGC	5 cut(s)	295, 437, 603, 663, 2116
KasI	GGCGCC	1 cut(s)	602
Ksp22I	TGATCA	3 cut(s)	564, 759, 1447
LguI	GCTCTTC	1 cut(s)	590
LmnI	GCTCC	4 cut(s)	12, 1070, 1760, 1988
Lsp1109I	GCAGC	6 cut(s)	18, 251, 1153, 1365, 1937, 2012
LweI	GCATC	2 cut(s)	729, 2038
MaeI	CTAG	3 cut(s)	627, 1106, 1623
MaeII	ACGT	3 cut(s)	509, 575, 1518
MaeIII	GTNAC	5 cut(s)	1020, 1231, 1738, 1786, 2225
MbiI	CCGCTC	1 cut(s)	600
MflI	RGATCY	2 cut(s)	1558, 1909
MhlI	GDGCHC	1 cut(s)	41
MlsI	TGGCCA	1 cut(s)	1065
MluNI	TGGCCA	1 cut(s)	1065
Mly113I	GGCGCC	1 cut(s)	603
MlyI	GAGTC	7 cut(s)	119, 367, 398, 467, 878, 1145, 2114
MmeI	TCCRAC	1 cut(s)	153
Mox20I	TGGCCA	1 cut(s)	1065
MroXI	GAANNNNTTC	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	1065
MseI	TTAA	6 cut(s)	851, 858, 993, 1380, 1698, 2186
MslI	CAYNNNNRTG	1 cut(s)	894
Msp20I	TGGCCA	1 cut(s)	1065
MspA1I	CMGCKG	2 cut(s)	2003, 2081
MspI	CCGG	7 cut(s)	133, 300, 349, 383, 1634, 2070, 2223
MspR9I	CCNGG	3 cut(s)	1634, 1724, 1806
MvaI	CCWGG	2 cut(s)	1724, 1806
MvnI	CGCG	2 cut(s)	63, 68
NarI	GGCGCC	1 cut(s)	603
NciI	CCSGG	1 cut(s)	1634
NcoI	CCATGG	1 cut(s)	177
NdeI	CATATG	1 cut(s)	1249
NlaIII	CATG	8 cut(s)	115, 181, 205, 283, 484, 935, 1708, 1799
NlaIV	GGNNCC	5 cut(s)	137, 604, 690, 805, 1102
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	3 cut(s)	1020, 1231, 1738
NspI	RCATGY	1 cut(s)	484
NspV	TTCGAA	1 cut(s)	1430
OliI	CACNNNNGTG	1 cut(s)	894
PaeR7I	CTCGAG	1 cut(s)	431
PciSI	GCTCTTC	1 cut(s)	590
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 399
PdmI	GAANNNNTTC	1 cut(s)	335
PfeI	GAWTC	6 cut(s)	427, 451, 517, 795, 1253, 2042
PleI	GAGTC	7 cut(s)	119, 367, 398, 467, 877, 1145, 2113
PluTI	GGCGCC	1 cut(s)	606
PpsI	GAGTC	7 cut(s)	119, 367, 398, 467, 877, 1145, 2113
Ppu21I	YACGTR	1 cut(s)	510
Psp1406I	AACGTT	1 cut(s)	1518
Psp6I	CCWGG	2 cut(s)	1722, 1804
PspGI	CCWGG	2 cut(s)	1722, 1804
PspN4I	GGNNCC	5 cut(s)	137, 604, 690, 805, 1102
PspPI	GGNCC	7 cut(s)	55, 70, 135, 193, 368, 803, 907
PstI	CTGCAG	2 cut(s)	896, 2129
PstNI	CAGNNNCTG	3 cut(s)	31, 1445, 1805
PsuI	RGATCY	2 cut(s)	1558, 1909
PvuII	CAGCTG	1 cut(s)	2003
RsaI	GTAC	4 cut(s)	494, 548, 784, 928
RsaNI	GTAC	4 cut(s)	493, 547, 783, 927
RseI	CAYNNNNRTG	1 cut(s)	894
Rsr2I	CGGWCCG	1 cut(s)	368
RsrII	CGGWCCG	1 cut(s)	368
SapI	GCTCTTC	1 cut(s)	590
SaqAI	TTAA	6 cut(s)	851, 858, 993, 1380, 1698, 2186
Sau96I	GGNCC	7 cut(s)	55, 70, 135, 193, 368, 803, 907
ScaI	AGTACT	1 cut(s)	494
SchI	GAGTC	7 cut(s)	119, 367, 398, 467, 878, 1145, 2114
ScrFI	CCNGG	3 cut(s)	1634, 1724, 1806
SduI	GDGCHC	1 cut(s)	41
SfaNI	GCATC	2 cut(s)	729, 2038
SfcI	CTRYAG	4 cut(s)	892, 1277, 1860, 2125
SfoI	GGCGCC	1 cut(s)	604
Sfr274I	CTCGAG	1 cut(s)	431
SfuI	TTCGAA	1 cut(s)	1430
SgrAI	CRCCGGYG	1 cut(s)	299
SinI	GGWCC	3 cut(s)	135, 368, 907
SlaI	CTCGAG	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	894
SmlI	CTYRAG	3 cut(s)	431, 1016, 1775
SmoI	CTYRAG	3 cut(s)	431, 1016, 1775
SpeI	ACTAGT	1 cut(s)	626
SspDI	GGCGCC	1 cut(s)	602
SspI	AATATT	1 cut(s)	962
SspMI	CTAG	3 cut(s)	627, 1106, 1623
StyD4I	CCNGG	3 cut(s)	1632, 1722, 1804
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	4 cut(s)	1053, 1223, 1441, 1491
TaiI	ACGT	3 cut(s)	512, 578, 1521
TaqI	TCGA	7 cut(s)	123, 240, 402, 432, 1344, 1430, 1650
TaqII	GACCGA	1 cut(s)	385
TatI	WGTACW	2 cut(s)	492, 926
TauI	GCSGC	8 cut(s)	60, 63, 71, 161, 176, 306, 382, 603
TfiI	GAWTC	6 cut(s)	427, 451, 517, 795, 1253, 2042
Tru1I	TTAA	6 cut(s)	851, 858, 993, 1380, 1698, 2186
Tru9I	TTAA	6 cut(s)	851, 858, 993, 1380, 1698, 2186
TscAI	CASTG	7 cut(s)	540, 896, 901, 1446, 1747, 2031, 2116
TseFI	GTSAC	3 cut(s)	1020, 1231, 1738
TseI	GCWGC	6 cut(s)	31, 264, 1166, 1353, 1950, 2000
Tsp45I	GTSAC	3 cut(s)	1020, 1231, 1738
TspGWI	ACGGA	2 cut(s)	510, 1083
TspRI	CASTG	7 cut(s)	540, 896, 901, 1446, 1747, 2031, 2116
VpaK11BI	GGWCC	3 cut(s)	135, 368, 907
XagI	CCTNNNNNAGG	1 cut(s)	2056
XapI	RAATTY	7 cut(s)	698, 822, 1185, 1309, 1331, 1664, 1821
XceI	RCATGY	1 cut(s)	484
XcmI	CCANNNNNNNNNTGG	2 cut(s)	49, 814
XhoI	CTCGAG	1 cut(s)	431
XmnI	GAANNNNTTC	1 cut(s)	335
XspI	CTAG	3 cut(s)	627, 1106, 1623
ZrmI	AGTACT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.