Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001898

Physical Location & Seq

Genomic Coordinates Reverse (-)

1804894 .. 1805292

Gene Structure 399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22060

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAACACTCTCTGGTGCACCGGCGGCTTCCTCACCAATAGTCACAGCCCTAAGAAGTTCAGGTCTCGCCGGAAGAAGATCATCGGACCGACTCAGCCGTCGGACTGCCTCGTGGTTTTCGACTCCGAGAAGAAGTCGTCGATGATTCTCGAGGCGCATAGGTTGCAGGTTCCGATTGTTTCGCTTGTGGACTCGGACATGCCTATCGAGTACTACAACAAGATCACGTATCCGATTCCGTGTAATTCCTCGGTGCAATTTGTGTACCTGTTCTGCAATTTGATCACCAAGACGTTCATGCTTCAGCAGAAGAAAAGCGGCGCCGATTCTACCGAAATTGAGACTAGGTGTGTTGGTGTTTTTGGTGCCCACCAGGTGTTTGATGTTTTGATTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

132

Amino Acids

14.98

Weight (kDa)

8.62

Isoelectric Point (pI)

59.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S2	PF00318	23 - 98	2.9e-10	Ribosomal protein S2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03600
fragaria_vesca	FvH4_7g08140
malus_domestica	MD02G1230600.v1.1
prunus_persica	Prupe.2G107500_v2.0.a1
pyrus_communis	pycom02g19970 pycom07g06540
rosa_chinensis	RchiOBHm_Chr1g0341081 RchiOBHm_Chr1g0363821 RchiOBHm_Chr1g0383121 RchiOBHm_Chr2g0085551 RchiOBHm_Chr3g0481141 RchiOBHm_Chr5g0027611 RchiOBHm_Chr5g0054321 RchiOBHm_Chr6g0246101
rosa_laevigata	RLG00000003952 RLG00000006546 RLG00000013359 RLG00000020654 RLG00000029063
rosa_multiflora	Rmu_sc0000533.1_g000047 Rmu_sc0000821.1_g000002 Rmu_sc0001211.1_g000068 Rmu_sc0002200.1_g000002 Rmu_sc0004332.1_g000001 Rmu_sc0004577.1_g000014 Rmu_sc0008563.1_g000010 Rmu_sc0012351.1_g000004 Rmu_ssc0000190.1_g000008
rosa_roxburghii	Rroxscaffold_1G00011600 Rroxscaffold_4G00311710
rosa_rugosa	Rorug01G0160000.1 Rorug05G0092000
rosa_samantha	Rh1AG174300 Rh1BG142600 Rh1BG221400 Rh1CG162100 Rh1CG365900 Rh1DG174200 Rh1DG248400 Rh1DG383600 Rh3AG240800 Rh5AG444100 Rh5DG194400
rosa_wichuraiana	Rw1G014550 Rw4G015450 Rw5G024540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	97
Acc36I	ACCTGC	1 cut(s)	157
AccB1I	GGYRCC	2 cut(s)	320, 365
AciI	CCGC	2 cut(s)	24, 318
AcuI	CTGAAG	1 cut(s)	287
AcyI	GRCGYC	1 cut(s)	321
AdeI	CACNNNGTG	1 cut(s)	376
AfaI	GTAC	2 cut(s)	212, 266
AjnI	CCWGG	1 cut(s)	372
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	2 cut(s)	69, 335
Alw44I	GTGCAC	1 cut(s)	16
Ama87I	CYCGRG	1 cut(s)	149
ApaLI	GTGCAC	1 cut(s)	16
AspLEI	GCGC	2 cut(s)	157, 323
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	2 cut(s)	25, 277
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	86
BaeGI	GKGCMC	2 cut(s)	20, 370
BanI	GGYRCC	2 cut(s)	320, 365
BauI	CACGAG	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	1 cut(s)	374
BciVI	GTATCC	1 cut(s)	240
BclI	TGATCA	1 cut(s)	282
BcoDI	GTCTC	2 cut(s)	69, 335
BfaI	CTAG	1 cut(s)	345
BfoI	RGCGCY	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	157
BfuI	GTATCC	1 cut(s)	240
BisI	GCNGC	2 cut(s)	25, 319
BlsI	GCNGC	2 cut(s)	26, 320
BmcAI	AGTACT	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	374
Bme18I	GGWCC	1 cut(s)	86
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	3 cut(s)	171, 322, 367
BmrFI	CCNGG	1 cut(s)	374
BsaAI	YACGTR	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	249
Bse118I	RCCGGY	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	107
BseSI	GKGCMC	2 cut(s)	20, 370
BshNI	GGYRCC	2 cut(s)	320, 365
BsiHKAI	GWGCWC	1 cut(s)	20
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	2 cut(s)	21, 70
BsmAI	GTCTC	2 cut(s)	69, 335
Bso31I	GGTCTC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	2 cut(s)	20, 370
Bsp143I	GATC	3 cut(s)	78, 222, 282
BspACI	CCGC	2 cut(s)	24, 318
BspCNI	CTCAG	1 cut(s)	106
BspLI	GGNNCC	3 cut(s)	171, 322, 367
BspMI	ACCTGC	1 cut(s)	157
BspT107I	GGYRCC	2 cut(s)	320, 365
BspTNI	GGTCTC	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	3 cut(s)	78, 222, 282
BssNI	GRCGYC	1 cut(s)	321
BssSI	CACGAG	1 cut(s)	110
Bst2BI	CACGAG	1 cut(s)	110
Bst2UI	CCWGG	1 cut(s)	374
BstACI	GRCGYC	1 cut(s)	321
BstAPI	GCANNNNNTGC	1 cut(s)	163
BstBAI	YACGTR	1 cut(s)	228
BstDEI	CTNAG	2 cut(s)	51, 93
BstH2I	RGCGCY	1 cut(s)	324
BstHHI	GCGC	2 cut(s)	157, 323
BstKTI	GATC	3 cut(s)	81, 225, 285
BstMAI	GTCTC	2 cut(s)	69, 335
BstMBI	GATC	3 cut(s)	78, 222, 282
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 163
BstNI	CCWGG	1 cut(s)	374
BstNSI	RCATGY	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	372
BstSLI	GKGCMC	2 cut(s)	20, 370
BsuI	GTATCC	1 cut(s)	240
BveI	ACCTGC	1 cut(s)	157
CfoI	GCGC	2 cut(s)	157, 323
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	86
CpoI	CGGWCCG	1 cut(s)	86
CsiI	ACCWGGT	1 cut(s)	372
Csp6I	GTAC	2 cut(s)	211, 265
CspI	CGGWCCG	1 cut(s)	86
CviAII	CATG	2 cut(s)	199, 298
CviJI	RGCY	3 cut(s)	27, 48, 97
CviKI_1	RGCY	3 cut(s)	27, 48, 97
CviQI	GTAC	2 cut(s)	211, 265
DdeI	CTNAG	2 cut(s)	51, 93
DinI	GGCGCC	1 cut(s)	322
DpnI	GATC	3 cut(s)	80, 224, 284
DpnII	GATC	3 cut(s)	78, 222, 282
DraIII	CACNNNGTG	1 cut(s)	376
DrdI	GACNNNNNNGTC	1 cut(s)	97
DseDI	GACNNNNNNGTC	1 cut(s)	97
Eco31I	GGTCTC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	287
Eco88I	CYCGRG	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	372
EgeI	GGCGCC	1 cut(s)	322
EheI	GGCGCC	1 cut(s)	322
FaeI	CATG	2 cut(s)	202, 301
FaiI	YATR	3 cut(s)	159, 200, 299
FatI	CATG	2 cut(s)	198, 297
FbaI	TGATCA	1 cut(s)	282
Fnu4HI	GCNGC	2 cut(s)	25, 319
Fsp4HI	GCNGC	2 cut(s)	25, 319
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	2 cut(s)	156, 322
GluI	GCNGC	2 cut(s)	25, 319
HaeII	RGCGCY	1 cut(s)	324
HapII	CCGG	2 cut(s)	21, 70
HhaI	GCGC	2 cut(s)	157, 323
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	2 cut(s)	202, 301
Hin6I	GCGC	2 cut(s)	155, 321
HinP1I	GCGC	2 cut(s)	155, 321
HinfI	GANTC	6 cut(s)	91, 122, 145, 191, 235, 326
HpaII	CCGG	2 cut(s)	21, 70
HphI	GGTGA	2 cut(s)	25, 277
Hpy166II	GTNNAC	3 cut(s)	18, 190, 265
Hpy188I	TCNGA	6 cut(s)	86, 103, 127, 174, 196, 234
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	3 cut(s)	18, 190, 265
Hpy99I	CGWCG	2 cut(s)	103, 142
HpyCH4IV	ACGT	2 cut(s)	227, 293
HpyCH4V	TGCA	4 cut(s)	18, 166, 256, 276
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 163
HpyF3I	CTNAG	2 cut(s)	51, 93
HpySE526I	ACGT	2 cut(s)	227, 293
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	2 cut(s)	202, 301
HspAI	GCGC	2 cut(s)	155, 321
KasI	GGCGCC	1 cut(s)	320
Ksp22I	TGATCA	1 cut(s)	282
Kzo9I	GATC	3 cut(s)	78, 222, 282
LpnPI	CCDG	7 cut(s)	34, 46, 83, 152, 281, 359, 386
MabI	ACCWGGT	1 cut(s)	372
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	2 cut(s)	227, 293
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	3 cut(s)	80, 224, 284
MboI	GATC	3 cut(s)	78, 222, 282
MboII	GAAGA	4 cut(s)	85, 88, 142, 322
MhlI	GDGCHC	2 cut(s)	20, 370
MluCI	AATT	4 cut(s)	244, 257, 277, 336
Mly113I	GGCGCC	1 cut(s)	321
MlyI	GAGTC	3 cut(s)	85, 116, 185
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	4 cut(s)	41, 119, 145, 259
MspI	CCGG	2 cut(s)	21, 70
MspR9I	CCNGG	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	2 cut(s)	24, 163
NarI	GGCGCC	1 cut(s)	321
NdeII	GATC	3 cut(s)	78, 222, 282
NlaIII	CATG	2 cut(s)	202, 301
NlaIV	GGNNCC	3 cut(s)	171, 322, 367
NmuCI	GTSAC	1 cut(s)	41
NspI	RCATGY	1 cut(s)	202
PaeR7I	CTCGAG	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PfeI	GAWTC	3 cut(s)	145, 235, 326
PkrI	GCNGC	2 cut(s)	26, 320
PleI	GAGTC	3 cut(s)	85, 116, 185
PluTI	GGCGCC	1 cut(s)	324
PpsI	GAGTC	3 cut(s)	85, 116, 185
Ppu21I	YACGTR	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	3 cut(s)	171, 322, 367
PspPI	GGNCC	1 cut(s)	86
RsaI	GTAC	2 cut(s)	212, 266
RsaNI	GTAC	2 cut(s)	211, 265
Rsr2I	CGGWCCG	1 cut(s)	86
RsrII	CGGWCCG	1 cut(s)	86
SatI	GCNGC	2 cut(s)	25, 319
Sau3AI	GATC	3 cut(s)	78, 222, 282
Sau96I	GGNCC	1 cut(s)	86
ScaI	AGTACT	1 cut(s)	212
SchI	GAGTC	3 cut(s)	85, 116, 185
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	2 cut(s)	20, 370
SetI	ASST	8 cut(s)	65, 164, 171, 230, 270, 296, 350, 378
SexAI	ACCWGGT	1 cut(s)	372
SfoI	GGCGCC	1 cut(s)	322
Sfr274I	CTCGAG	1 cut(s)	149
SgrAI	CRCCGGYG	1 cut(s)	20
SinI	GGWCC	1 cut(s)	86
SlaI	CTCGAG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	4 cut(s)	244, 257, 277, 336
SsiI	CCGC	2 cut(s)	24, 318
SspDI	GGCGCC	1 cut(s)	320
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	372
TaiI	ACGT	2 cut(s)	230, 296
TaqI	TCGA	4 cut(s)	120, 140, 150, 207
TaqII	GACCGA	1 cut(s)	103
TasI	AATT	4 cut(s)	244, 257, 277, 336
TatI	WGTACW	1 cut(s)	210
TauI	GCSGC	2 cut(s)	27, 321
TfiI	GAWTC	3 cut(s)	145, 235, 326
TseFI	GTSAC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	2 cut(s)	17, 286
TspGWI	ACGGA	1 cut(s)	228
VneI	GTGCAC	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	86
XceI	RCATGY	1 cut(s)	202
XhoI	CTCGAG	1 cut(s)	149
XspI	CTAG	1 cut(s)	345
ZrmI	AGTACT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.