Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001898

Physical Location & Seq

Genomic Coordinates Reverse (-)

56871711 .. 56872087

Gene Structure 377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33149

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAACACTCTCTGGCGCATCGGCGGCTTCCTCACCAATAGTCACAGCCCTAAGAAGTTCAGGTCTCACCGGAAGAAGATCGTCTTCGGACCGACTCAGCCGCCGGACTGCCTCATGGTTTTCGATTCCGAGAGGAAGTCGTCGGTGATTCTCGAGGCGCATAGGTTGCAGGTTCCGATTGTTTCGCTTGTGGACTCGGACATGCCTATTGTGTACCTGTTCTGCAATTTGATCACCAAGACGTTCATACTTCAGCAGAAGAAAAGTGGCGTCGATTCTGCTGAAATTGAGACTAGGTGTGTTGGTGTTTTTGGTGCGCACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

108

Amino Acids

12.22

Weight (kDa)

9.41

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03600
fragaria_vesca	FvH4_7g08140
malus_domestica	MD02G1230600.v1.1
prunus_persica	Prupe.2G107500_v2.0.a1
pyrus_communis	pycom02g19970 pycom07g06540
rosa_chinensis	RchiOBHm_Chr1g0341081 RchiOBHm_Chr1g0363821 RchiOBHm_Chr1g0383121 RchiOBHm_Chr2g0085551 RchiOBHm_Chr3g0481141 RchiOBHm_Chr5g0027611 RchiOBHm_Chr5g0054321 RchiOBHm_Chr6g0246101
rosa_laevigata	RLG00000003952 RLG00000006546 RLG00000013359 RLG00000020654 RLG00000029063
rosa_multiflora	Rmu_sc0000533.1_g000047 Rmu_sc0000821.1_g000002 Rmu_sc0001211.1_g000068 Rmu_sc0002200.1_g000002 Rmu_sc0004332.1_g000001 Rmu_sc0004577.1_g000014 Rmu_sc0008563.1_g000010 Rmu_sc0012351.1_g000004 Rmu_ssc0000190.1_g000008
rosa_roxburghii	Rroxscaffold_1G00011600 Rroxscaffold_4G00311710
rosa_rugosa	Rorug01G0160000.1 Rorug05G0092000
rosa_samantha	Rh1AG174300 Rh1BG142600 Rh1BG221400 Rh1CG162100 Rh1CG365900 Rh1DG174200 Rh1DG248400 Rh1DG383600 Rh3AG240800 Rh5AG444100 Rh5DG194400
rosa_wichuraiana	Rw1G014550 Rw4G015450 Rw5G024540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	318
Acc36I	ACCTGC	1 cut(s)	160
AciI	CCGC	2 cut(s)	24, 101
AcuI	CTGAAG	1 cut(s)	236
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	1 cut(s)	215
Alw26I	GTCTC	2 cut(s)	69, 284
Ama87I	CYCGRG	1 cut(s)	152
AspLEI	GCGC	3 cut(s)	18, 160, 319
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	4 cut(s)	25, 59, 157, 226
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	76
BclI	TGATCA	1 cut(s)	231
BcoDI	GTCTC	2 cut(s)	69, 284
BfaI	CTAG	1 cut(s)	294
BfuAI	ACCTGC	1 cut(s)	160
BisI	GCNGC	2 cut(s)	25, 101
BlsI	GCNGC	2 cut(s)	26, 102
Bme18I	GGWCC	1 cut(s)	89
BmeT110I	CYCGRG	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	174
BmsI	GCATC	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	76
BsaHI	GRCGYC	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	69
Bse1I	ACTGG	1 cut(s)	322
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	1 cut(s)	322
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	2 cut(s)	70, 104
BsmAI	GTCTC	2 cut(s)	69, 284
Bso31I	GGTCTC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	152
Bsp143I	GATC	2 cut(s)	78, 231
BspACI	CCGC	2 cut(s)	24, 101
BspCNI	CTCAG	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	174
BspMI	ACCTGC	1 cut(s)	160
BspTNI	GGTCTC	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	322
BssMI	GATC	2 cut(s)	78, 231
BssNI	GRCGYC	1 cut(s)	270
BstACI	GRCGYC	1 cut(s)	270
BstAPI	GCANNNNNTGC	1 cut(s)	166
BstDEI	CTNAG	2 cut(s)	51, 96
BstHHI	GCGC	3 cut(s)	18, 160, 319
BstKTI	GATC	2 cut(s)	81, 234
BstMAI	GTCTC	2 cut(s)	69, 284
BstMBI	GATC	2 cut(s)	78, 231
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 166
BstNSI	RCATGY	1 cut(s)	205
BstV2I	GAAGAC	1 cut(s)	76
BveI	ACCTGC	1 cut(s)	160
CfoI	GCGC	3 cut(s)	18, 160, 319
Cfr13I	GGNCC	1 cut(s)	89
CpoI	CGGWCCG	1 cut(s)	89
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	1 cut(s)	214
CspI	CGGWCCG	1 cut(s)	89
CviAII	CATG	2 cut(s)	115, 202
CviJI	RGCY	3 cut(s)	27, 48, 100
CviKI_1	RGCY	3 cut(s)	27, 48, 100
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	2 cut(s)	51, 96
DpnI	GATC	2 cut(s)	80, 233
DpnII	GATC	2 cut(s)	78, 231
Eco31I	GGTCTC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	152
FaeI	CATG	2 cut(s)	118, 205
FaiI	YATR	4 cut(s)	116, 162, 203, 248
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FatI	CATG	2 cut(s)	114, 201
FbaI	TGATCA	1 cut(s)	231
Fnu4HI	GCNGC	2 cut(s)	25, 101
Fsp4HI	GCNGC	2 cut(s)	25, 101
FspAI	RTGCGCAY	1 cut(s)	318
FspBI	CTAG	1 cut(s)	294
FspI	TGCGCA	1 cut(s)	318
GlaI	GCGC	3 cut(s)	17, 159, 318
GluI	GCNGC	2 cut(s)	25, 101
HapII	CCGG	2 cut(s)	70, 104
HgaI	GACGC	1 cut(s)	259
HhaI	GCGC	3 cut(s)	18, 160, 319
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	2 cut(s)	118, 205
Hin6I	GCGC	3 cut(s)	16, 158, 317
HinP1I	GCGC	3 cut(s)	16, 158, 317
HinfI	GANTC	5 cut(s)	94, 125, 148, 194, 275
HpaII	CCGG	2 cut(s)	70, 104
HphI	GGTGA	4 cut(s)	25, 59, 157, 226
Hpy166II	GTNNAC	2 cut(s)	193, 214
Hpy188I	TCNGA	4 cut(s)	89, 130, 177, 199
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	2 cut(s)	193, 214
Hpy99I	CGWCG	2 cut(s)	145, 275
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	2 cut(s)	169, 225
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 166
HpyF3I	CTNAG	2 cut(s)	51, 96
HpySE526I	ACGT	1 cut(s)	242
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	2 cut(s)	118, 205
HspAI	GCGC	3 cut(s)	16, 158, 317
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	2 cut(s)	78, 231
LpnPI	CCDG	5 cut(s)	46, 83, 117, 155, 230
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	2 cut(s)	80, 233
MboI	GATC	2 cut(s)	78, 231
MboII	GAAGA	4 cut(s)	76, 85, 88, 271
MluCI	AATT	2 cut(s)	226, 285
MlyI	GAGTC	2 cut(s)	88, 188
MnlI	CCTC	4 cut(s)	41, 122, 126, 148
MspI	CCGG	2 cut(s)	70, 104
MwoI	GCNNNNNNNGC	2 cut(s)	24, 166
NdeII	GATC	2 cut(s)	78, 231
NlaIII	CATG	2 cut(s)	118, 205
NlaIV	GGNNCC	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	41
NsbI	TGCGCA	1 cut(s)	318
NspI	RCATGY	1 cut(s)	205
PaeR7I	CTCGAG	1 cut(s)	152
PfeI	GAWTC	3 cut(s)	125, 148, 275
PkrI	GCNGC	2 cut(s)	26, 102
PleI	GAGTC	2 cut(s)	88, 188
PpsI	GAGTC	2 cut(s)	88, 188
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	89
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
Rsr2I	CGGWCCG	1 cut(s)	89
RsrII	CGGWCCG	1 cut(s)	89
SatI	GCNGC	2 cut(s)	25, 101
Sau3AI	GATC	2 cut(s)	78, 231
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	2 cut(s)	88, 188
SetI	ASST	6 cut(s)	65, 167, 174, 219, 245, 299
SfaNI	GCATC	1 cut(s)	27
Sfr274I	CTCGAG	1 cut(s)	152
SinI	GGWCC	1 cut(s)	89
SlaI	CTCGAG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	2 cut(s)	226, 285
SsiI	CCGC	2 cut(s)	24, 101
SspMI	CTAG	1 cut(s)	294
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	3 cut(s)	123, 153, 273
TaqII	GACCGA	1 cut(s)	106
TasI	AATT	2 cut(s)	226, 285
TauI	GCSGC	2 cut(s)	27, 103
TfiI	GAWTC	3 cut(s)	125, 148, 275
TseFI	GTSAC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	2 cut(s)	17, 235
VpaK11BI	GGWCC	1 cut(s)	89
XceI	RCATGY	1 cut(s)	205
XhoI	CTCGAG	1 cut(s)	152
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.