Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001898

Physical Location & Seq

Genomic Coordinates Reverse (-)

54667693 .. 54668301

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003952

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCCGACAACAAGGCCCGCTTCATGTTCATCAACACCAACTCCCTCTGGGATGAAATCGTCAAACAAATGACCAAGAAGATCTGCTGCTACTCTCCCTCCATGAACACTCTCTGGCGCACTGGCGGCTTCCTCACCAATAGTCACATCCCTAAGAAGTTTAGGTCTCGCTGGAAGAAGATCGTCTTCGGATCGACTCAGCCGCCGGACTGCCTCGTGGTTTTTGACTCCGAGAGGAAGTCGTCGGTGATTCTCGAGGCGCATAGGTTGCAGATTCCGATTCTTTCGCTTGTGGACTCGGACATGCCTATTGAGTACTACAACAAGATCACGTATCCGATTCCGTGTAATTCCTCGGTGCAATTTGTGTACCTGTTCTGCAATTTGATCACCAAGACGTTCATGCTTCAGCAGAAGAAGAGCGGCGCCGTTTCGGCCGAAATTGAGACTAGTGAGCGAGTGGGGGTTATAGAGGAGGCTAAGAGCGCAAAGAAGGATGAGGTGCTTGTGGTTCAATCAATTAAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

177

Amino Acids

20.11

Weight (kDa)

9.19

Isoelectric Point (pI)

54.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S2	PF00318	66 - 133	2.7e-10	Ribosomal protein S2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03600
fragaria_vesca	FvH4_7g08140
malus_domestica	MD02G1230600.v1.1
prunus_persica	Prupe.2G107500_v2.0.a1
pyrus_communis	pycom02g19970 pycom07g06540
rosa_chinensis	RchiOBHm_Chr1g0341081 RchiOBHm_Chr1g0363821 RchiOBHm_Chr1g0383121 RchiOBHm_Chr2g0085551 RchiOBHm_Chr3g0481141 RchiOBHm_Chr5g0027611 RchiOBHm_Chr5g0054321 RchiOBHm_Chr6g0246101
rosa_laevigata	RLG00000003952 RLG00000006546 RLG00000013359 RLG00000020654 RLG00000029063
rosa_multiflora	Rmu_sc0000533.1_g000047 Rmu_sc0000821.1_g000002 Rmu_sc0001211.1_g000068 Rmu_sc0002200.1_g000002 Rmu_sc0004332.1_g000001 Rmu_sc0004577.1_g000014 Rmu_sc0008563.1_g000010 Rmu_sc0012351.1_g000004 Rmu_ssc0000190.1_g000008
rosa_roxburghii	Rroxscaffold_1G00011600 Rroxscaffold_4G00311710
rosa_rugosa	Rorug01G0160000.1 Rorug05G0092000
rosa_samantha	Rh1AG174300 Rh1BG142600 Rh1BG221400 Rh1CG162100 Rh1CG365900 Rh1DG174200 Rh1DG248400 Rh1DG383600 Rh3AG240800 Rh5AG444100 Rh5DG194400
rosa_wichuraiana	Rw1G014550 Rw4G015450 Rw5G024540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	425
AccBSI	CCGCTC	1 cut(s)	423
AciI	CCGC	4 cut(s)	19, 126, 203, 423
AclWI	GGATC	1 cut(s)	199
AcoI	YGGCCR	2 cut(s)	3, 435
AcuI	CTGAAG	1 cut(s)	392
AcyI	GRCGYC	1 cut(s)	426
AfaI	GTAC	2 cut(s)	317, 371
AgsI	TTSAA	1 cut(s)	515
AhlI	ACTAGT	1 cut(s)	449
Alw26I	GTCTC	2 cut(s)	171, 440
AlwI	GGATC	1 cut(s)	199
Ama87I	CYCGRG	1 cut(s)	254
AoxI	GGCC	3 cut(s)	3, 15, 435
ApeKI	GCWGC	1 cut(s)	87
AspLEI	GCGC	4 cut(s)	120, 262, 428, 488
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	3 cut(s)	127, 259, 382
AvaI	CYCGRG	1 cut(s)	254
BanI	GGYRCC	1 cut(s)	425
BauI	CACGAG	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	413
BciVI	GTATCC	1 cut(s)	345
BclI	TGATCA	1 cut(s)	387
BcoDI	GTCTC	2 cut(s)	171, 440
BcuI	ACTAGT	1 cut(s)	449
BfaI	CTAG	1 cut(s)	450
BfoI	RGCGCY	1 cut(s)	429
BfuI	GTATCC	1 cut(s)	345
BglI	GCCNNNNNGGC	1 cut(s)	434
BglII	AGATCT	1 cut(s)	81
BisI	GCNGC	4 cut(s)	88, 127, 203, 424
BlsI	GCNGC	4 cut(s)	89, 128, 204, 425
BmcAI	AGTACT	1 cut(s)	317
BmeT110I	CYCGRG	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	427
BpiI	GAAGAC	1 cut(s)	178
BsaAI	YACGTR	1 cut(s)	333
BsaHI	GRCGYC	1 cut(s)	426
BsaI	GGTCTC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	354
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 83, 113
Bse1I	ACTGG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	3 cut(s)	58, 147, 502
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	127
BseRI	GAGGAG	1 cut(s)	488
BseX3I	CGGCCG	1 cut(s)	435
BseXI	GCAGC	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	438
BshFI	GGCC	3 cut(s)	5, 17, 437
BshNI	GGYRCC	1 cut(s)	425
BsiEI	CGRYCG	1 cut(s)	438
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	1 cut(s)	206
BsmAI	GTCTC	2 cut(s)	171, 440
BsnI	GGCC	3 cut(s)	5, 17, 437
Bso31I	GGTCTC	1 cut(s)	171
BsoBI	CYCGRG	1 cut(s)	254
Bsp143I	GATC	5 cut(s)	81, 180, 191, 327, 387
BspACI	CCGC	4 cut(s)	19, 126, 203, 423
BspANI	GGCC	3 cut(s)	5, 17, 437
BspCNI	CTCAG	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	427
BspPI	GGATC	1 cut(s)	199
BspQI	GCTCTTC	1 cut(s)	413
BspT107I	GGYRCC	1 cut(s)	425
BspTNI	GGTCTC	1 cut(s)	171
BsrBI	CCGCTC	1 cut(s)	423
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	5 cut(s)	81, 180, 191, 327, 387
BssNI	GRCGYC	1 cut(s)	426
BssSI	CACGAG	1 cut(s)	215
Bst2BI	CACGAG	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	413
BstACI	GRCGYC	1 cut(s)	426
BstAPI	GCANNNNNTGC	1 cut(s)	268
BstBAI	YACGTR	1 cut(s)	333
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	3 cut(s)	153, 198, 480
BstF5I	GGATG	3 cut(s)	58, 147, 502
BstH2I	RGCGCY	1 cut(s)	429
BstHHI	GCGC	4 cut(s)	120, 262, 428, 488
BstKTI	GATC	5 cut(s)	84, 183, 194, 330, 390
BstMAI	GTCTC	2 cut(s)	171, 440
BstMBI	GATC	5 cut(s)	81, 180, 191, 327, 387
BstMCI	CGRYCG	1 cut(s)	438
BstMWI	GCNNNNNNNGC	4 cut(s)	126, 268, 434, 485
BstNSI	RCATGY	1 cut(s)	307
BstV1I	GCAGC	1 cut(s)	74
BstV2I	GAAGAC	1 cut(s)	178
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BstZI	CGGCCG	1 cut(s)	435
BsuI	GTATCC	1 cut(s)	345
BsuRI	GGCC	3 cut(s)	5, 17, 437
BtsCI	GGATG	3 cut(s)	58, 147, 502
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	19
CfoI	GCGC	4 cut(s)	120, 262, 428, 488
Cfr13I	GGNCC	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	316, 370
CviAII	CATG	4 cut(s)	25, 103, 304, 403
CviJI	RGCY	6 cut(s)	5, 17, 129, 202, 437, 479
CviKI_1	RGCY	6 cut(s)	5, 17, 129, 202, 437, 479
CviQI	GTAC	2 cut(s)	316, 370
DdeI	CTNAG	3 cut(s)	153, 198, 480
DinI	GGCGCC	1 cut(s)	427
DpnI	GATC	5 cut(s)	83, 182, 193, 329, 389
DpnII	GATC	5 cut(s)	81, 180, 191, 327, 387
EaeI	YGGCCR	2 cut(s)	3, 435
EagI	CGGCCG	1 cut(s)	435
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
EclXI	CGGCCG	1 cut(s)	435
Eco31I	GGTCTC	1 cut(s)	171
Eco52I	CGGCCG	1 cut(s)	435
Eco57I	CTGAAG	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	254
EgeI	GGCGCC	1 cut(s)	427
EheI	GGCGCC	1 cut(s)	427
FaeI	CATG	4 cut(s)	28, 106, 307, 406
FaiI	YATR	6 cut(s)	26, 104, 264, 305, 404, 470
FalI	AAGNNNNNCTT	3 cut(s)	37, 170, 202
FatI	CATG	4 cut(s)	24, 102, 303, 402
FauI	CCCGC	1 cut(s)	26
FbaI	TGATCA	1 cut(s)	387
Fnu4HI	GCNGC	4 cut(s)	88, 127, 203, 424
FokI	GGATG	3 cut(s)	65, 134, 509
Fsp4HI	GCNGC	4 cut(s)	88, 127, 203, 424
FspBI	CTAG	1 cut(s)	450
GlaI	GCGC	4 cut(s)	119, 261, 427, 487
GluI	GCNGC	4 cut(s)	88, 127, 203, 424
HaeII	RGCGCY	1 cut(s)	429
HaeIII	GGCC	3 cut(s)	5, 17, 437
HapII	CCGG	1 cut(s)	206
HhaI	GCGC	4 cut(s)	120, 262, 428, 488
Hin1I	GRCGYC	1 cut(s)	426
Hin1II	CATG	4 cut(s)	28, 106, 307, 406
Hin6I	GCGC	4 cut(s)	118, 260, 426, 486
HinP1I	GCGC	4 cut(s)	118, 260, 426, 486
HinfI	GANTC	7 cut(s)	196, 227, 250, 274, 280, 296, 340
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	3 cut(s)	127, 259, 382
Hpy166II	GTNNAC	2 cut(s)	295, 370
Hpy188I	TCNGA	5 cut(s)	191, 232, 279, 301, 339
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	2 cut(s)	295, 370
Hpy99I	CGWCG	1 cut(s)	247
HpyAV	CCTTC	1 cut(s)	487
HpyCH4IV	ACGT	2 cut(s)	332, 398
HpyCH4V	TGCA	3 cut(s)	271, 361, 381
HpyF10VI	GCNNNNNNNGC	4 cut(s)	126, 268, 434, 485
HpyF3I	CTNAG	3 cut(s)	153, 198, 480
HpySE526I	ACGT	2 cut(s)	332, 398
Hsp92I	GRCGYC	1 cut(s)	426
Hsp92II	CATG	4 cut(s)	28, 106, 307, 406
HspAI	GCGC	4 cut(s)	118, 260, 426, 486
KasI	GGCGCC	1 cut(s)	425
Ksp22I	TGATCA	1 cut(s)	387
Kzo9I	GATC	5 cut(s)	81, 180, 191, 327, 387
LguI	GCTCTTC	1 cut(s)	413
LpnPI	CCDG	6 cut(s)	34, 100, 108, 157, 219, 386
Lsp1109I	GCAGC	1 cut(s)	74
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	2 cut(s)	332, 398
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	5 cut(s)	83, 182, 193, 329, 389
MbiI	CCGCTC	1 cut(s)	423
MboI	GATC	5 cut(s)	81, 180, 191, 327, 387
MboII	GAAGA	6 cut(s)	91, 178, 187, 190, 427, 430
MflI	RGATCY	1 cut(s)	81
MluCI	AATT	5 cut(s)	349, 362, 382, 441, 519
Mly113I	GGCGCC	1 cut(s)	426
MlyI	GAGTC	3 cut(s)	190, 221, 290
MseI	TTAA	1 cut(s)	522
MspI	CCGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	4 cut(s)	126, 268, 434, 485
NarI	GGCGCC	1 cut(s)	426
NdeII	GATC	5 cut(s)	81, 180, 191, 327, 387
NlaIII	CATG	4 cut(s)	28, 106, 307, 406
NlaIV	GGNNCC	1 cut(s)	427
NmuCI	GTSAC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	307
PaeR7I	CTCGAG	1 cut(s)	254
PciSI	GCTCTTC	1 cut(s)	413
PfeI	GAWTC	4 cut(s)	250, 274, 280, 340
PkrI	GCNGC	4 cut(s)	89, 128, 204, 425
PleI	GAGTC	3 cut(s)	190, 221, 290
PluTI	GGCGCC	1 cut(s)	429
PpsI	GAGTC	3 cut(s)	190, 221, 290
Ppu21I	YACGTR	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	427
PspPI	GGNCC	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	81
RsaI	GTAC	2 cut(s)	317, 371
RsaNI	GTAC	2 cut(s)	316, 370
SapI	GCTCTTC	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	4 cut(s)	88, 127, 203, 424
Sau3AI	GATC	5 cut(s)	81, 180, 191, 327, 387
Sau96I	GGNCC	1 cut(s)	16
ScaI	AGTACT	1 cut(s)	317
SchI	GAGTC	3 cut(s)	190, 221, 290
SetI	ASST	6 cut(s)	167, 269, 335, 375, 401, 504
SfoI	GGCGCC	1 cut(s)	427
Sfr274I	CTCGAG	1 cut(s)	254
SlaI	CTCGAG	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SpeI	ACTAGT	1 cut(s)	449
Sse9I	AATT	5 cut(s)	349, 362, 382, 441, 519
SsiI	CCGC	4 cut(s)	19, 126, 203, 423
SspDI	GGCGCC	1 cut(s)	425
SspMI	CTAG	1 cut(s)	450
TaiI	ACGT	2 cut(s)	335, 401
TaqI	TCGA	2 cut(s)	194, 255
TasI	AATT	5 cut(s)	349, 362, 382, 441, 519
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	3 cut(s)	129, 205, 426
TfiI	GAWTC	4 cut(s)	250, 274, 280, 340
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	1 cut(s)	87
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	5 cut(s)	13, 19, 69, 119, 391
TspGWI	ACGGA	1 cut(s)	333
TspRI	CASTG	1 cut(s)	127
XceI	RCATGY	1 cut(s)	307
XhoI	CTCGAG	1 cut(s)	254
XspI	CTAG	1 cut(s)	450
ZrmI	AGTACT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.